Wall clock time and date at job start Tue Mar 31 2020 13:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48494 * 109.47325 * 239.99685 * 3 2 1 5 5 H 1.48496 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47183 * 119.99880 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 O 1.45200 * 109.47003 * 180.02562 * 10 9 7 12 12 C 1.34222 * 117.00098 * 180.02562 * 11 10 9 13 13 O 1.20822 * 120.00130 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99989 * 180.02562 * 12 11 10 15 15 S 1.81396 * 115.55029 * 19.41368 * 14 12 11 16 16 O 1.42102 * 110.54247 * 77.21005 * 15 14 12 17 17 O 1.42099 * 110.54436 * 213.95803 * 15 14 12 18 18 C 1.76200 * 104.45063 * 325.58206 * 15 14 12 19 19 C 1.38228 * 119.99969 * 269.72607 * 18 15 14 20 20 C 1.38244 * 119.99685 * 179.78634 * 19 18 15 21 21 C 1.38229 * 119.99952 * 0.43982 * 20 19 18 22 22 C 1.38240 * 120.00053 * 359.82004 * 21 20 19 23 23 C 1.38232 * 119.99727 * 89.99910 * 18 15 14 24 24 C 1.53003 * 117.49929 * 233.74592 * 14 12 11 25 25 C 1.53001 * 117.49952 * 165.08249 * 14 12 11 26 26 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 28 28 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 29 29 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 30 30 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 31 31 H 1.07996 * 120.00491 * 359.97438 * 19 18 15 32 32 H 1.08003 * 119.99581 * 180.28023 * 20 19 18 33 33 H 1.07998 * 120.00195 * 179.82650 * 21 20 19 34 34 H 1.07999 * 119.99753 * 179.97438 * 22 21 20 35 35 H 1.08008 * 120.00275 * 359.97438 * 23 18 15 36 36 H 1.09007 * 117.49596 * 359.97438 * 24 14 12 37 37 H 1.08991 * 117.49995 * 145.02254 * 24 14 12 38 38 H 1.08993 * 117.50264 * 214.97807 * 25 14 12 39 39 H 1.09007 * 117.49854 * 359.97438 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 8 1.5195 -4.9196 -0.0011 12 6 2.2505 -6.0452 -0.0007 13 8 3.4571 -5.9820 -0.0003 14 6 1.5664 -7.3880 -0.0019 15 16 -0.1635 -7.3842 -0.5477 16 8 -0.2394 -7.2874 -1.9634 17 8 -0.9121 -8.3623 0.1608 18 6 -0.8029 -5.8466 0.0280 19 6 -1.3842 -5.7649 1.2794 20 6 -1.8819 -4.5575 1.7328 21 6 -1.8063 -3.4339 0.9311 22 6 -1.2297 -3.5169 -0.3225 23 6 -0.7281 -4.7232 -0.7741 24 6 1.9596 -8.3822 1.0927 25 6 2.4146 -8.6127 -0.3507 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5568 -0.8902 28 1 0.6248 -2.5571 0.8897 29 1 2.8721 -3.6043 -0.8905 30 1 2.8721 -3.6042 0.8895 31 1 -1.4470 -6.6436 1.9041 32 1 -2.3321 -4.4927 2.7124 33 1 -2.1976 -2.4913 1.2842 34 1 -1.1710 -2.6391 -0.9490 35 1 -0.2774 -4.7880 -1.7535 36 1 2.7135 -8.0651 1.8134 37 1 1.1790 -9.0342 1.4844 38 1 1.9330 -9.4163 -0.9078 39 1 3.4674 -8.4472 -0.5797 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748131019.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:28 Heat of formation + Delta-G solvation = -87.417855 kcal Electronic energy + Delta-G solvation = -26558.366969 eV Core-core repulsion = 22753.257016 eV Total energy + Delta-G solvation = -3805.109953 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.44238 -38.71300 -37.57248 -37.00277 -35.98901 -35.84920 -33.54121 -31.09512 -30.70719 -30.06999 -26.38108 -24.46457 -23.11348 -22.70795 -22.29778 -21.24926 -20.91925 -19.06127 -18.39028 -17.45887 -16.68262 -16.32439 -16.15104 -15.77685 -15.58424 -15.48055 -14.67109 -14.38586 -14.22793 -14.10771 -13.52899 -13.35756 -13.01274 -12.64456 -12.33029 -12.28302 -12.06483 -12.01910 -11.90185 -11.87405 -11.53403 -11.29802 -11.13041 -10.98435 -10.89922 -10.74777 -10.65075 -10.43199 -10.24800 -9.78573 -9.75242 -9.46612 -8.76975 -8.51630 -8.20454 -6.21138 -4.23317 -0.00094 1.34776 1.82137 2.01414 2.69114 2.81113 3.21407 3.23111 3.27868 3.31263 3.58959 3.90869 4.16906 4.21805 4.30337 4.53638 4.69960 5.10920 5.16934 5.18182 5.23823 5.31055 5.37984 5.60950 5.61758 5.80699 5.90581 5.93780 5.95853 6.19905 6.40636 6.50329 6.55650 6.73651 6.79484 7.00897 7.36848 7.42824 7.52062 7.74309 7.93272 8.14160 8.79813 9.40852 10.89894 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.017510 B = 0.004826 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.703389 B = 5800.076873 C = 6789.796712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.066 3.934 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.019 3.981 10 C 0.068 3.932 11 O -0.339 6.339 12 C 0.510 3.490 13 O -0.499 6.499 14 C -0.656 4.656 15 S 2.540 3.460 16 O -0.928 6.928 17 O -0.933 6.933 18 C -0.641 4.641 19 C -0.035 4.035 20 C -0.149 4.149 21 C -0.050 4.050 22 C -0.103 4.103 23 C 0.011 3.989 24 C -0.095 4.095 25 C -0.099 4.099 26 H 0.264 0.736 27 H 0.040 0.960 28 H 0.035 0.965 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.129 0.871 32 H 0.122 0.878 33 H 0.128 0.872 34 H 0.145 0.855 35 H 0.130 0.870 36 H 0.121 0.879 37 H 0.132 0.868 38 H 0.119 0.881 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.757 -14.706 2.292 14.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.203 1.203 7 C -0.567 4.567 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.004 4.004 11 O -0.255 6.255 12 C 0.351 3.649 13 O -0.388 6.388 14 C -0.742 4.742 15 S 2.719 3.281 16 O -0.925 6.925 17 O -0.930 6.930 18 C -0.732 4.732 19 C -0.054 4.054 20 C -0.168 4.168 21 C -0.068 4.068 22 C -0.122 4.122 23 C -0.008 4.008 24 C -0.132 4.132 25 C -0.137 4.137 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.147 0.853 32 H 0.140 0.860 33 H 0.146 0.854 34 H 0.163 0.837 35 H 0.148 0.852 36 H 0.139 0.861 37 H 0.150 0.850 38 H 0.138 0.862 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.941 -15.154 1.831 15.388 hybrid contribution 1.185 2.005 0.536 2.389 sum -0.756 -13.150 2.367 13.383 Atomic orbital electron populations 1.69893 1.05858 1.27076 1.49755 1.24876 0.94941 0.99058 0.94754 0.86578 0.79569 0.82681 0.78728 1.20166 1.21134 1.20251 1.20966 0.93130 0.90253 1.52305 0.92605 1.19668 0.94237 0.88537 0.99279 1.23834 0.96829 0.78551 1.01188 1.86882 1.40708 1.15504 1.82422 1.20957 0.85846 0.84771 0.73337 1.90613 1.15085 1.87596 1.45457 1.31650 1.24576 0.95980 1.22040 1.03980 0.74327 0.75090 0.74724 1.93566 1.84816 1.86651 1.27462 1.93543 1.65358 1.59059 1.75065 1.29663 1.18299 1.19176 1.06081 1.20617 0.93923 0.98069 0.92807 1.21122 1.02581 0.93007 1.00077 1.21460 0.93859 0.97943 0.93531 1.21475 0.96253 0.97412 0.97039 1.20697 0.91274 0.91191 0.97681 1.23124 1.03650 0.94579 0.91871 1.23072 1.01299 0.90836 0.98471 0.92682 0.94173 0.94641 0.92051 0.92237 0.85342 0.86034 0.85383 0.83726 0.85218 0.86059 0.84984 0.86244 0.85320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.44 13.29 55.43 0.74 -22.70 16 2 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.53 -13.76 9.11 -34.44 -0.31 -14.08 16 8 H 0.06 1.44 7.74 -52.48 -0.41 1.04 16 9 C 0.02 0.45 3.43 -27.88 -0.10 0.36 16 10 C 0.07 1.41 5.40 37.16 0.20 1.61 16 11 O -0.34 -6.20 5.01 -39.24 -0.20 -6.40 16 12 C 0.51 8.58 7.58 36.01 0.27 8.85 16 13 O -0.50 -9.39 16.10 -18.75 -0.30 -9.69 16 14 C -0.66 -8.56 2.75 -91.77 -0.25 -8.81 16 15 S 2.54 36.46 5.37 -107.50 -0.58 35.89 16 16 O -0.93 -15.58 17.13 -57.54 -0.99 -16.57 16 17 O -0.93 -13.66 16.41 -57.54 -0.94 -14.60 16 18 C -0.64 -10.16 4.06 -39.59 -0.16 -10.32 16 19 C -0.03 -0.51 9.47 -39.58 -0.37 -0.89 16 20 C -0.15 -2.20 10.05 -39.58 -0.40 -2.60 16 21 C -0.05 -0.83 9.29 -39.58 -0.37 -1.20 16 22 C -0.10 -1.85 6.37 -39.58 -0.25 -2.10 16 23 C 0.01 0.19 5.93 -39.59 -0.23 -0.05 16 24 C -0.09 -0.90 9.86 -26.69 -0.26 -1.16 16 25 C -0.10 -0.96 9.81 -26.69 -0.26 -1.22 16 26 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 27 H 0.04 0.94 5.22 -51.93 -0.27 0.67 16 28 H 0.04 0.86 6.57 -51.93 -0.34 0.52 16 29 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 30 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 31 H 0.13 1.57 7.56 -52.49 -0.40 1.17 16 32 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 33 H 0.13 2.08 8.06 -52.49 -0.42 1.66 16 34 H 0.15 2.81 7.01 -52.49 -0.37 2.44 16 35 H 0.13 2.18 7.57 -52.48 -0.40 1.79 16 36 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.13 0.97 7.66 -51.93 -0.40 0.58 16 38 H 0.12 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.13 1.25 7.75 -51.92 -0.40 0.85 16 LS Contribution 336.79 15.07 5.08 5.08 Total: -1.00 -31.07 336.79 -9.46 -40.54 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -4.65 Total: 3.07 kcal Atomic # 6 Polarization: -27.37 SS G_CDS: -2.60 Total: -29.97 kcal Atomic # 7 Polarization: -23.44 SS G_CDS: 0.74 Total: -22.70 kcal Atomic # 8 Polarization: -44.84 SS G_CDS: -2.43 Total: -47.27 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 36.46 SS G_CDS: -0.58 Total: 35.89 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.07 -9.46 -40.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748131019.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.879 kcal (2) G-P(sol) polarization free energy of solvation -31.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds