Wall clock time and date at job start Tue Mar 31 2020 13:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48494 * 109.47325 * 239.99685 * 3 2 1 5 5 H 1.48496 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47183 * 119.99880 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 O 1.45200 * 109.47003 * 180.02562 * 10 9 7 12 12 C 1.34222 * 117.00098 * 180.02562 * 11 10 9 13 13 O 1.20822 * 120.00130 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99989 * 180.02562 * 12 11 10 15 15 S 1.81396 * 115.55029 * 19.41368 * 14 12 11 16 16 O 1.42102 * 110.54247 * 77.21005 * 15 14 12 17 17 O 1.42099 * 110.54436 * 213.95803 * 15 14 12 18 18 C 1.76200 * 104.45063 * 325.58206 * 15 14 12 19 19 C 1.38228 * 119.99969 * 269.72607 * 18 15 14 20 20 C 1.38244 * 119.99685 * 179.78634 * 19 18 15 21 21 C 1.38229 * 119.99952 * 0.43982 * 20 19 18 22 22 C 1.38240 * 120.00053 * 359.82004 * 21 20 19 23 23 C 1.38232 * 119.99727 * 89.99910 * 18 15 14 24 24 C 1.53003 * 117.49929 * 233.74592 * 14 12 11 25 25 C 1.53001 * 117.49952 * 165.08249 * 14 12 11 26 26 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 28 28 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 29 29 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 30 30 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 31 31 H 1.07996 * 120.00491 * 359.97438 * 19 18 15 32 32 H 1.08003 * 119.99581 * 180.28023 * 20 19 18 33 33 H 1.07998 * 120.00195 * 179.82650 * 21 20 19 34 34 H 1.07999 * 119.99753 * 179.97438 * 22 21 20 35 35 H 1.08008 * 120.00275 * 359.97438 * 23 18 15 36 36 H 1.09007 * 117.49596 * 359.97438 * 24 14 12 37 37 H 1.08991 * 117.49995 * 145.02254 * 24 14 12 38 38 H 1.08993 * 117.50264 * 214.97807 * 25 14 12 39 39 H 1.09007 * 117.49854 * 359.97438 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 8 1.5195 -4.9196 -0.0011 12 6 2.2505 -6.0452 -0.0007 13 8 3.4571 -5.9820 -0.0003 14 6 1.5664 -7.3880 -0.0019 15 16 -0.1635 -7.3842 -0.5477 16 8 -0.2394 -7.2874 -1.9634 17 8 -0.9121 -8.3623 0.1608 18 6 -0.8029 -5.8466 0.0280 19 6 -1.3842 -5.7649 1.2794 20 6 -1.8819 -4.5575 1.7328 21 6 -1.8063 -3.4339 0.9311 22 6 -1.2297 -3.5169 -0.3225 23 6 -0.7281 -4.7232 -0.7741 24 6 1.9596 -8.3822 1.0927 25 6 2.4146 -8.6127 -0.3507 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5568 -0.8902 28 1 0.6248 -2.5571 0.8897 29 1 2.8721 -3.6043 -0.8905 30 1 2.8721 -3.6042 0.8895 31 1 -1.4470 -6.6436 1.9041 32 1 -2.3321 -4.4927 2.7124 33 1 -2.1976 -2.4913 1.2842 34 1 -1.1710 -2.6391 -0.9490 35 1 -0.2774 -4.7880 -1.7535 36 1 2.7135 -8.0651 1.8134 37 1 1.1790 -9.0342 1.4844 38 1 1.9330 -9.4163 -0.9078 39 1 3.4674 -8.4472 -0.5797 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748131019.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:28 Heat of formation + Delta-G solvation = -105.974614 kcal Electronic energy + Delta-G solvation = -26559.171651 eV Core-core repulsion = 22753.257016 eV Total energy + Delta-G solvation = -3805.914634 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.79321 -39.96963 -38.70528 -38.20844 -37.20570 -37.11879 -35.45428 -32.68102 -32.00203 -31.57679 -27.85751 -26.06901 -24.06539 -23.80358 -23.53434 -22.86278 -22.29142 -20.30542 -19.64368 -18.70556 -18.39010 -17.72775 -17.62094 -16.98782 -16.79299 -16.75373 -16.47752 -15.62630 -15.38554 -15.21413 -15.08167 -14.69682 -14.41556 -14.26439 -13.85485 -13.40161 -13.26752 -13.22475 -13.16625 -13.12613 -12.81406 -12.67757 -12.62920 -12.59244 -12.33313 -12.05558 -11.98923 -11.81279 -11.52895 -11.49603 -11.39475 -11.30304 -10.52652 -10.03648 -9.55736 -8.20934 -6.30124 -1.12840 0.08184 0.55252 0.82453 1.37327 1.41878 1.44097 1.50992 1.68381 2.19099 2.39991 2.49410 2.83806 3.01970 3.13581 3.23550 3.51571 3.60911 4.02082 4.11729 4.20523 4.21838 4.29932 4.30745 4.47571 4.58533 4.64022 4.70077 4.74897 4.92658 4.94523 5.15096 5.23785 5.26701 5.49050 5.51511 5.61454 5.72295 5.81191 6.10068 6.15334 6.49501 6.79261 7.36730 8.88905 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.017510 B = 0.004826 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.703389 B = 5800.076873 C = 6789.796712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.023 3.977 3 Si 0.955 3.045 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.273 1.273 7 C -0.555 4.555 8 H 0.051 0.949 9 C 0.032 3.968 10 C 0.079 3.921 11 O -0.339 6.339 12 C 0.507 3.493 13 O -0.522 6.522 14 C -0.671 4.671 15 S 2.563 3.437 16 O -0.957 6.957 17 O -0.930 6.930 18 C -0.652 4.652 19 C -0.034 4.034 20 C -0.145 4.145 21 C -0.064 4.064 22 C -0.119 4.119 23 C -0.004 4.004 24 C -0.075 4.075 25 C -0.090 4.090 26 H 0.265 0.735 27 H 0.032 0.968 28 H 0.022 0.978 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.162 0.838 32 H 0.154 0.846 33 H 0.124 0.876 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.128 0.872 37 H 0.162 0.838 38 H 0.152 0.848 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.386 -16.844 3.673 17.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.178 4.178 3 Si 0.781 3.219 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.199 1.199 7 C -0.593 4.593 8 H 0.070 0.930 9 C -0.005 4.005 10 C 0.006 3.994 11 O -0.255 6.255 12 C 0.350 3.650 13 O -0.412 6.412 14 C -0.759 4.759 15 S 2.742 3.258 16 O -0.954 6.954 17 O -0.927 6.927 18 C -0.741 4.741 19 C -0.052 4.052 20 C -0.163 4.163 21 C -0.082 4.082 22 C -0.138 4.138 23 C -0.023 4.023 24 C -0.112 4.112 25 C -0.128 4.128 26 H 0.074 0.926 27 H 0.050 0.950 28 H 0.040 0.960 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.179 0.821 32 H 0.172 0.828 33 H 0.142 0.858 34 H 0.135 0.865 35 H 0.140 0.860 36 H 0.146 0.854 37 H 0.179 0.821 38 H 0.170 0.830 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.605 -17.288 3.208 17.656 hybrid contribution 1.084 2.563 0.127 2.785 sum -0.521 -14.725 3.335 15.107 Atomic orbital electron populations 1.69998 1.06825 1.27777 1.49820 1.25601 0.95791 1.01987 0.94401 0.85657 0.78469 0.79089 0.78709 1.19904 1.20563 1.19857 1.21324 0.93245 0.91855 1.52834 0.93029 1.19421 0.94077 0.88834 0.98171 1.23408 0.95878 0.79407 1.00659 1.86898 1.40499 1.15348 1.82769 1.21595 0.85819 0.85395 0.72234 1.90603 1.16020 1.87943 1.46628 1.31494 1.23233 0.94796 1.26411 1.03310 0.74582 0.74056 0.73810 1.93533 1.85665 1.86770 1.29419 1.93538 1.65893 1.58468 1.74811 1.30004 1.18279 1.19434 1.06417 1.21064 0.92530 0.99122 0.92528 1.21472 1.01714 0.92211 1.00946 1.21537 0.94377 0.98853 0.93466 1.21265 0.97984 0.96943 0.97624 1.20637 0.92059 0.91695 0.97904 1.23524 1.04053 0.92044 0.91606 1.23484 1.01086 0.89029 0.99215 0.92573 0.95039 0.95975 0.92596 0.92634 0.82078 0.82810 0.85793 0.86511 0.86035 0.85358 0.82051 0.83015 0.85302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.06 13.29 21.45 0.28 -48.77 16 2 C 0.02 1.21 5.46 84.65 0.46 1.68 16 3 Si 0.96 42.12 29.54 68.60 2.03 44.14 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 7 C -0.55 -29.67 9.11 25.60 0.23 -29.44 16 8 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 9 C 0.03 1.54 3.43 29.85 0.10 1.64 16 10 C 0.08 3.38 5.40 71.98 0.39 3.77 16 11 O -0.34 -12.54 5.01 -51.34 -0.26 -12.79 16 12 C 0.51 16.62 7.58 71.24 0.54 17.16 16 13 O -0.52 -19.29 16.10 21.98 0.35 -18.93 16 14 C -0.67 -15.85 2.75 -11.54 -0.03 -15.88 16 15 S 2.56 68.61 5.37 -56.49 -0.30 68.30 16 16 O -0.96 -31.44 17.13 -127.65 -2.19 -33.62 16 17 O -0.93 -24.06 16.41 -127.65 -2.09 -26.16 16 18 C -0.65 -20.17 4.06 22.27 0.09 -20.08 16 19 C -0.03 -0.92 9.47 22.27 0.21 -0.70 16 20 C -0.14 -4.08 10.05 22.27 0.22 -3.86 16 21 C -0.06 -2.20 9.29 22.27 0.21 -1.99 16 22 C -0.12 -4.54 6.37 22.27 0.14 -4.40 16 23 C 0.00 -0.13 5.93 22.27 0.13 0.00 16 24 C -0.07 -1.10 9.86 30.62 0.30 -0.80 16 25 C -0.09 -1.43 9.81 30.62 0.30 -1.13 16 26 H 0.27 13.69 8.31 -92.71 -0.77 12.91 16 27 H 0.03 1.57 5.22 -2.39 -0.01 1.56 16 28 H 0.02 1.11 6.57 -2.39 -0.02 1.10 16 29 H 0.06 2.40 8.13 -2.39 -0.02 2.38 16 30 H 0.06 2.37 8.13 -2.39 -0.02 2.36 16 31 H 0.16 3.30 7.56 -2.91 -0.02 3.27 16 32 H 0.15 3.28 8.06 -2.91 -0.02 3.25 16 33 H 0.12 4.23 8.06 -2.91 -0.02 4.21 16 34 H 0.12 4.99 7.01 -2.91 -0.02 4.97 16 35 H 0.12 4.39 7.57 -2.91 -0.02 4.37 16 36 H 0.13 1.79 8.14 -2.38 -0.02 1.77 16 37 H 0.16 1.49 7.66 -2.39 -0.02 1.47 16 38 H 0.15 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.13 2.11 7.75 -2.38 -0.02 2.09 16 Total: -1.00 -67.86 336.79 2.20 -65.66 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 1.07 Total: 16.21 kcal Atomic # 6 Polarization: -57.34 SS G_CDS: 3.30 Total: -54.04 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: 0.28 Total: -48.77 kcal Atomic # 8 Polarization: -87.32 SS G_CDS: -4.18 Total: -91.51 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.14 kcal Atomic # 16 Polarization: 68.61 SS G_CDS: -0.30 Total: 68.30 kcal Total: -67.86 2.20 -65.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748131019.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.313 kcal (2) G-P(sol) polarization free energy of solvation -67.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds