Wall clock time and date at job start Tue Mar 31 2020 13:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30218 * 126.78505 * 2 1 4 4 O 1.20919 * 111.64356 * 180.29065 * 3 2 1 5 5 C 1.34069 * 111.55392 * 359.69361 * 4 3 2 6 6 Cl 1.73602 * 126.80033 * 180.02562 * 5 4 3 7 7 C 1.35683 * 106.40293 * 0.02562 * 5 4 3 8 8 C 1.50699 * 128.01305 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46985 * 90.02145 * 8 7 5 10 10 C 1.50699 * 109.46985 * 180.02562 * 9 8 7 11 11 O 1.21304 * 120.00152 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00169 * 180.27613 * 10 9 8 13 13 C 1.40589 * 120.00486 * 179.72414 * 12 10 9 14 14 C 1.40656 * 126.07924 * 359.69133 * 13 12 10 15 15 N 1.30915 * 108.38261 * 179.81440 * 14 13 12 16 16 N 1.40065 * 108.40837 * 0.44365 * 15 14 13 17 17 C 1.37328 * 126.06870 * 179.69060 * 16 15 14 18 18 H 1.07999 * 119.99985 * 174.15724 * 17 16 15 19 19 C 1.38988 * 119.99656 * 354.16769 * 17 16 15 20 20 N 1.31296 * 120.00573 * 5.92900 * 19 17 16 21 21 Si 1.86800 * 119.99697 * 185.93408 * 19 17 16 22 22 H 1.48508 * 109.47104 * 94.97723 * 21 19 17 23 23 H 1.48496 * 109.47246 * 214.97546 * 21 19 17 24 24 H 1.48499 * 109.47301 * 334.97837 * 21 19 17 25 25 C 1.35686 * 126.08554 * 180.02562 * 13 12 10 26 26 H 1.09002 * 109.46977 * 270.20402 * 1 2 3 27 27 H 1.09006 * 109.47245 * 30.20189 * 1 2 3 28 28 H 1.08996 * 109.47005 * 150.20047 * 1 2 3 29 29 H 1.09004 * 109.47083 * 330.02257 * 8 7 5 30 30 H 1.08993 * 109.47235 * 210.02367 * 8 7 5 31 31 H 1.08998 * 109.46869 * 60.00505 * 9 8 7 32 32 H 1.08993 * 109.47316 * 300.00173 * 9 8 7 33 33 H 0.97001 * 119.99765 * 359.73316 * 12 10 9 34 34 H 1.07993 * 125.80325 * 359.97125 * 14 13 12 35 35 H 0.96992 * 120.00033 * 180.02562 * 20 19 17 36 36 H 1.07997 * 126.24621 * 359.97438 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0429 0.0000 4 8 3.4540 0.7271 -0.0057 5 6 3.6037 -0.6052 -0.0037 6 17 5.1013 -1.4834 -0.0094 7 6 2.3531 -1.1314 0.0037 8 6 1.9581 -2.5857 0.0081 9 6 1.8313 -3.0753 1.4522 10 6 1.4369 -4.5297 1.4566 11 8 1.2737 -5.1171 0.4079 12 7 1.2606 -5.1765 2.6257 13 6 0.8870 -6.5319 2.6300 14 6 0.6583 -7.3316 1.4957 15 7 0.3337 -8.5346 1.8974 16 7 0.3324 -8.5479 3.2980 17 6 0.0361 -9.6256 4.0960 18 1 0.1565 -9.5538 5.1669 19 6 -0.4184 -10.8086 3.5255 20 7 -0.4542 -10.9363 2.2192 21 14 -0.9785 -12.2171 4.6172 22 1 -2.4516 -12.1508 4.7940 23 1 -0.6138 -13.5097 3.9838 24 1 -0.3158 -12.1105 5.9418 25 6 0.6767 -7.2995 3.7289 26 1 -0.3633 0.0037 1.0277 27 1 -0.3634 0.8882 -0.5170 28 1 -0.3633 -0.8917 -0.5107 29 1 2.7192 -3.1705 -0.5083 30 1 1.0016 -2.7039 -0.5009 31 1 1.0702 -2.4905 1.9686 32 1 2.7878 -2.9570 1.9612 33 1 1.3913 -4.7069 3.4644 34 1 0.7393 -7.0088 0.4684 35 1 -0.7717 -11.7618 1.8211 36 1 0.7662 -6.9809 4.7570 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748731561.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:13 Heat of formation + Delta-G solvation = 99.817717 kcal Electronic energy + Delta-G solvation = -23633.918523 eV Core-core repulsion = 19763.636415 eV Total energy + Delta-G solvation = -3870.282108 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.36437 -39.94590 -38.71135 -37.52931 -36.07781 -34.23550 -33.36119 -33.12353 -30.91507 -30.18211 -29.07650 -27.87427 -25.68575 -24.48515 -21.94211 -21.67719 -20.94434 -20.07923 -19.40965 -18.17735 -18.00184 -17.50976 -16.49327 -15.90646 -15.47173 -15.29894 -15.10599 -14.24001 -14.06216 -13.74589 -13.61603 -13.41281 -13.16491 -12.98655 -12.87102 -12.81955 -12.68348 -12.42235 -12.03396 -11.68567 -11.44297 -11.42357 -11.27398 -11.00886 -10.94044 -10.53632 -10.26192 -10.15617 -9.56067 -9.18731 -9.14654 -8.80646 -8.06367 -6.70647 -6.57032 -4.23687 0.77104 0.88434 1.73391 2.81716 3.02607 3.04436 3.09695 3.26756 3.58100 3.67149 3.73619 3.88768 4.25577 4.41249 4.49958 4.65274 4.86549 4.89052 5.00246 5.10731 5.14772 5.20356 5.32559 5.41432 5.51972 5.70313 5.85277 6.01254 6.23601 6.45784 6.90306 6.95397 7.11736 7.23850 7.73905 7.85562 8.17067 8.28504 8.62680 8.85010 9.37498 9.66613 10.39304 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.030184 B = 0.002214 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.407756 B =12642.167359 C =13020.681285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.034 3.966 3 N -0.350 5.350 4 O 0.108 5.892 5 C -0.002 4.002 6 Cl 0.051 6.949 7 C -0.161 4.161 8 C -0.030 4.030 9 C -0.131 4.131 10 C 0.498 3.502 11 O -0.536 6.536 12 N -0.625 5.625 13 C -0.061 4.061 14 C -0.033 4.033 15 N -0.262 5.262 16 N -0.143 5.143 17 C -0.324 4.324 18 H 0.116 0.884 19 C 0.047 3.953 20 N -0.770 5.770 21 Si 0.934 3.066 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.264 1.264 25 C -0.084 4.084 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.397 0.603 34 H 0.176 0.824 35 H 0.275 0.725 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.366 19.167 -0.929 19.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.124 4.124 3 N -0.056 5.056 4 O 0.041 5.959 5 C -0.092 4.092 6 Cl 0.079 6.921 7 C -0.166 4.166 8 C -0.068 4.068 9 C -0.171 4.171 10 C 0.284 3.716 11 O -0.414 6.414 12 N -0.267 5.267 13 C -0.166 4.166 14 C -0.209 4.209 15 N -0.093 5.093 16 N 0.089 4.911 17 C -0.456 4.456 18 H 0.134 0.866 19 C -0.171 4.171 20 N -0.396 5.396 21 Si 0.758 3.242 22 H -0.196 1.196 23 H -0.201 1.201 24 H -0.188 1.188 25 C -0.235 4.235 26 H 0.104 0.896 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.230 0.770 34 H 0.193 0.807 35 H 0.085 0.915 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.794 18.625 -2.227 19.361 hybrid contribution 0.347 -0.279 1.338 1.410 sum 5.141 18.345 -0.890 19.073 Atomic orbital electron populations 1.20268 0.85059 1.04387 1.03988 1.23389 0.99240 0.87836 1.01958 1.73949 0.88568 1.23024 1.20040 1.84907 1.22100 1.20805 1.68115 1.24637 0.91202 0.84843 1.08552 1.98472 1.28097 1.68818 1.96683 1.20965 0.89723 0.98535 1.07328 1.19721 1.04368 0.86145 0.96562 1.21548 1.03651 0.93770 0.98135 1.20259 0.79068 0.88391 0.83832 1.90606 1.51284 1.68097 1.31417 1.42535 1.66625 1.09603 1.07938 1.17289 1.20634 0.84510 0.94172 1.24114 1.06631 0.91295 0.98837 1.78247 1.25167 1.17724 0.88135 1.44546 1.36725 1.05464 1.04364 1.19869 1.45830 0.89477 0.90461 0.86642 1.25641 0.95981 0.99208 0.96237 1.70220 1.33884 1.25924 1.09595 0.85821 0.79322 0.79414 0.79638 1.19644 1.20105 1.18797 1.21274 1.17628 0.87600 0.96984 0.89596 0.90208 0.89252 0.88994 0.88772 0.89000 0.89103 0.77044 0.80703 0.91477 0.83759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.39 36.01 0.37 -0.19 16 2 C 0.03 0.34 7.32 -82.12 -0.60 -0.26 16 3 N -0.35 -3.95 12.07 33.44 0.40 -3.55 16 4 O 0.11 1.17 11.20 17.10 0.19 1.37 16 5 C 0.00 -0.02 8.12 29.82 0.24 0.22 16 6 Cl 0.05 0.45 29.23 -51.86 -1.52 -1.07 16 7 C -0.16 -1.59 5.58 -104.38 -0.58 -2.17 16 8 C -0.03 -0.31 4.90 -27.88 -0.14 -0.45 16 9 C -0.13 -1.35 5.68 -27.88 -0.16 -1.51 16 10 C 0.50 7.85 7.80 -10.99 -0.09 7.77 16 11 O -0.54 -10.59 13.13 5.54 0.07 -10.52 16 12 N -0.62 -10.42 5.47 -10.00 -0.05 -10.47 16 13 C -0.06 -1.36 6.90 -83.84 -0.58 -1.94 16 14 C -0.03 -0.86 10.85 -17.03 -0.18 -1.05 16 15 N -0.26 -7.55 10.42 30.80 0.32 -7.23 16 16 N -0.14 -3.90 3.74 -11.41 -0.04 -3.94 16 17 C -0.32 -8.52 10.24 -14.81 -0.15 -8.67 16 18 H 0.12 2.71 7.84 -52.49 -0.41 2.30 16 19 C 0.05 1.19 5.50 -17.50 -0.10 1.10 16 20 N -0.77 -21.41 11.84 55.50 0.66 -20.75 16 21 Si 0.93 18.79 29.56 -169.99 -5.02 13.77 16 22 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 23 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 24 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 25 C -0.08 -1.94 11.49 -16.39 -0.19 -2.13 16 26 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.09 0.57 7.65 -51.93 -0.40 0.17 16 29 H 0.09 1.04 8.10 -51.93 -0.42 0.62 16 30 H 0.09 0.99 7.60 -51.93 -0.39 0.59 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.40 4.99 8.83 -40.82 -0.36 4.63 16 34 H 0.18 4.47 5.92 -52.49 -0.31 4.16 16 35 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.14 2.77 8.06 -52.49 -0.42 2.35 16 LS Contribution 337.61 15.07 5.09 5.09 Total: -1.00 -33.38 337.61 -5.60 -38.98 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -3.54 Total: 7.62 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -2.15 Total: -9.29 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: 1.28 Total: -45.94 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.26 Total: -9.15 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.02 Total: 13.77 kcal Atomic # 17 Polarization: 0.45 SS G_CDS: -1.52 Total: -1.07 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.38 -5.60 -38.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748731561.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.793 kcal (2) G-P(sol) polarization free energy of solvation -33.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds