Wall clock time and date at job start Tue Mar 31 2020 14:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99931 * 2 1 4 4 H 1.48502 * 109.46909 * 275.24270 * 3 2 1 5 5 H 1.48498 * 109.47544 * 35.24839 * 3 2 1 6 6 H 1.48507 * 109.47105 * 155.24699 * 3 2 1 7 7 C 1.38815 * 120.00261 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99438 * 37.60417 * 7 2 1 9 9 N 1.36930 * 120.00239 * 217.88493 * 7 2 1 10 10 C 1.46972 * 120.59442 * 22.47964 * 9 7 2 11 11 C 1.53813 * 108.39615 * 124.75764 * 10 9 7 12 12 N 1.46969 * 108.57793 * 49.64066 * 11 10 9 13 13 S 1.65594 * 120.59247 * 124.62462 * 12 11 10 14 14 O 1.42099 * 106.40409 * 28.85072 * 13 12 11 15 15 O 1.42098 * 106.40057 * 161.77155 * 13 12 11 16 16 C 1.76198 * 107.21936 * 275.31011 * 13 12 11 17 17 C 1.37909 * 120.08738 * 345.69020 * 16 13 12 18 18 C 1.38384 * 120.17324 * 179.72137 * 17 16 13 19 19 C 1.38428 * 120.34763 * 0.54825 * 18 17 16 20 20 C 1.37862 * 120.17091 * 359.72645 * 19 18 17 21 21 C 1.39834 * 120.09002 * 165.95501 * 16 13 12 22 22 C 1.47160 * 120.17139 * 0.02989 * 21 16 13 23 23 O 1.21250 * 120.00438 * 185.73603 * 22 21 16 24 24 C 1.46964 * 118.81127 * 304.63913 * 12 11 10 25 25 C 1.46965 * 120.59717 * 202.76137 * 9 7 2 26 26 H 0.96999 * 120.00222 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.60933 * 244.54320 * 10 9 7 28 28 H 1.09001 * 109.60504 * 5.05029 * 10 9 7 29 29 H 1.08998 * 109.74544 * 289.84776 * 11 10 9 30 30 H 1.09005 * 109.67034 * 169.38785 * 11 10 9 31 31 H 1.08000 * 119.91379 * 359.97438 * 17 16 13 32 32 H 1.08001 * 119.82439 * 180.27690 * 18 17 16 33 33 H 1.08001 * 119.91363 * 179.74667 * 19 18 17 34 34 H 1.08001 * 120.08645 * 180.02562 * 20 19 18 35 35 H 1.08006 * 120.00289 * 5.74063 * 22 21 16 36 36 H 1.09001 * 109.61276 * 295.48970 * 24 12 11 37 37 H 1.09002 * 109.75036 * 175.05619 * 24 12 11 38 38 H 1.09007 * 109.60300 * 354.94486 * 25 9 7 39 39 H 1.08994 * 109.61149 * 115.28227 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3868 2.1104 -1.3942 5 1 1.5075 2.6182 0.8080 6 1 3.5988 1.4107 0.5862 7 6 2.0103 -1.2021 0.0005 8 1 1.6385 -2.0405 -0.5699 9 7 3.1632 -1.3268 0.7288 10 6 3.4290 -0.4357 1.8669 11 6 3.6943 -1.3019 3.1100 12 7 4.6909 -2.3251 2.7637 13 16 6.0856 -2.4751 3.6437 14 8 5.7786 -2.0367 4.9601 15 8 6.6048 -3.7660 3.3557 16 6 7.2416 -1.3168 2.9905 17 6 7.0083 -0.7212 1.7687 18 6 7.9121 0.1931 1.2567 19 6 9.0620 0.5087 1.9599 20 6 9.3123 -0.0824 3.1799 21 6 8.4008 -1.0032 3.7070 22 6 8.6606 -1.6391 5.0084 23 8 9.6113 -1.2896 5.6750 24 6 4.4276 -3.2125 1.6222 25 6 4.1597 -2.3500 0.3826 26 1 -0.4850 0.8400 0.0004 27 1 4.3029 0.1798 1.6533 28 1 2.5629 0.2025 2.0418 29 1 2.7697 -1.7842 3.4269 30 1 4.0765 -0.6774 3.9175 31 1 6.1158 -0.9658 1.2120 32 1 7.7216 0.6595 0.3014 33 1 9.7646 1.2201 1.5518 34 1 10.2096 0.1652 3.7276 35 1 8.0046 -2.4172 5.3699 36 1 3.5550 -3.8308 1.8331 37 1 5.2935 -3.8502 1.4440 38 1 3.7762 -2.9763 -0.4229 39 1 5.0833 -1.8676 0.0628 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751064063.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:47 Heat of formation + Delta-G solvation = -23.860883 kcal Electronic energy + Delta-G solvation = -26404.012187 eV Core-core repulsion = 22633.951023 eV Total energy + Delta-G solvation = -3770.061165 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.16209 -38.51992 -38.03618 -37.30222 -35.99231 -34.09398 -32.02632 -31.57310 -31.50054 -30.82109 -26.80310 -25.39986 -23.68121 -23.56707 -23.09168 -21.58011 -20.48977 -18.93750 -18.24521 -17.85906 -16.85535 -16.56785 -16.23471 -15.97944 -15.12498 -15.03713 -14.83620 -14.68564 -14.58625 -14.38587 -14.35663 -13.80704 -13.54555 -13.08585 -13.01671 -12.80922 -12.52625 -12.31517 -12.17738 -12.00163 -11.89419 -11.76764 -11.14539 -11.05724 -10.92243 -10.57071 -10.33179 -10.23979 -10.14941 -9.72546 -9.56255 -9.37918 -9.23561 -8.47593 -7.20570 -6.17868 -3.34984 0.01992 0.27119 0.74025 2.01836 2.72568 3.22996 3.26647 3.38492 3.43906 3.46715 3.70738 4.35542 4.42192 4.47382 4.51731 4.69005 4.77505 4.82200 4.85152 5.07199 5.21965 5.26314 5.43016 5.46364 5.59615 5.61483 5.73836 5.82571 5.84377 5.91241 5.97275 6.13332 6.21797 6.38864 6.41109 6.43464 6.68552 6.78051 6.86901 7.74389 8.13747 8.76773 9.57154 9.93967 10.95873 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.017668 B = 0.004951 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.415890 B = 5654.364706 C = 6426.079009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.040 3.960 3 Si 0.829 3.171 4 H -0.293 1.293 5 H -0.293 1.293 6 H -0.256 1.256 7 C -0.277 4.277 8 H 0.086 0.914 9 N -0.595 5.595 10 C 0.127 3.873 11 C 0.099 3.901 12 N -0.983 5.983 13 S 2.678 3.322 14 O -0.954 6.954 15 O -0.952 6.952 16 C -0.626 4.626 17 C -0.042 4.042 18 C -0.101 4.101 19 C -0.086 4.086 20 C -0.078 4.078 21 C -0.101 4.101 22 C 0.372 3.628 23 O -0.437 6.437 24 C 0.097 3.903 25 C 0.129 3.871 26 H 0.264 0.736 27 H 0.034 0.966 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.153 0.847 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.142 0.858 35 H 0.105 0.895 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.226 -1.675 3.842 15.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.162 4.162 3 Si 0.656 3.344 4 H -0.221 1.221 5 H -0.220 1.220 6 H -0.181 1.181 7 C -0.404 4.404 8 H 0.103 0.897 9 N -0.318 5.318 10 C 0.000 4.000 11 C -0.028 4.028 12 N -0.824 5.824 13 S 2.767 3.233 14 O -0.944 6.944 15 O -0.942 6.942 16 C -0.710 4.710 17 C -0.060 4.060 18 C -0.120 4.120 19 C -0.104 4.104 20 C -0.097 4.097 21 C -0.103 4.103 22 C 0.228 3.772 23 O -0.308 6.308 24 C -0.029 4.029 25 C 0.002 3.998 26 H 0.074 0.926 27 H 0.051 0.949 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.170 0.830 32 H 0.157 0.843 33 H 0.155 0.845 34 H 0.159 0.841 35 H 0.121 0.879 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 15.710 -1.974 4.877 16.568 hybrid contribution 0.515 1.814 -0.825 2.058 sum 16.226 -0.160 4.052 16.725 Atomic orbital electron populations 1.70131 1.06206 1.27010 1.48098 1.25103 0.94718 0.97418 0.98961 0.87760 0.82213 0.86424 0.78006 1.22107 1.21995 1.18099 1.18772 0.96865 0.97218 1.27543 0.89681 1.44227 1.20053 1.37041 1.30522 1.21890 0.99685 0.92047 0.86415 1.22376 0.91998 0.89683 0.98717 1.57348 1.32922 1.45872 1.46285 1.02650 0.72851 0.73955 0.73870 1.93616 1.83662 1.82900 1.34227 1.93612 1.79416 1.36114 1.85039 1.31485 1.13763 1.19574 1.06184 1.21341 0.99187 0.92978 0.92532 1.21631 0.93614 0.96438 1.00269 1.21460 0.96902 0.97919 0.94070 1.21520 0.98767 0.93937 0.95435 1.20447 0.94554 0.98742 0.96576 1.24268 0.85222 0.83718 0.83971 1.90504 1.27100 1.57909 1.55333 1.22221 1.02384 0.92122 0.86165 1.21412 0.92317 0.91603 0.94499 0.92644 0.94874 0.90179 0.89793 0.90068 0.82971 0.84342 0.84513 0.84052 0.87889 0.89992 0.89368 0.90176 0.95747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.72 13.97 55.49 0.78 -23.94 16 2 C 0.04 1.04 4.84 -17.43 -0.08 0.95 16 3 Si 0.83 19.24 26.30 -169.99 -4.47 14.77 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.26 -5.42 4.85 56.52 0.27 -5.15 16 7 C -0.28 -6.89 9.88 -15.06 -0.15 -7.03 16 8 H 0.09 2.26 8.03 -52.49 -0.42 1.84 16 9 N -0.60 -12.13 2.76 -171.76 -0.47 -12.60 16 10 C 0.13 2.38 4.34 -3.36 -0.01 2.37 16 11 C 0.10 1.57 6.55 -3.36 -0.02 1.55 16 12 N -0.98 -14.56 2.31 -113.00 -0.26 -14.82 16 13 S 2.68 38.96 4.50 -107.50 -0.48 38.47 16 14 O -0.95 -15.24 15.30 -57.17 -0.87 -16.12 16 15 O -0.95 -14.97 16.56 -57.17 -0.95 -15.92 16 16 C -0.63 -8.45 5.87 -39.11 -0.23 -8.68 16 17 C -0.04 -0.53 9.47 -39.65 -0.38 -0.91 16 18 C -0.10 -1.08 10.04 -39.46 -0.40 -1.47 16 19 C -0.09 -0.82 10.03 -39.65 -0.40 -1.22 16 20 C -0.08 -0.87 9.60 -39.11 -0.38 -1.24 16 21 C -0.10 -1.33 5.87 -105.07 -0.62 -1.94 16 22 C 0.37 5.01 10.59 34.35 0.36 5.38 16 23 O -0.44 -6.50 17.18 5.58 0.10 -6.40 16 24 C 0.10 1.38 6.50 -3.60 -0.02 1.36 16 25 C 0.13 2.08 6.18 -3.60 -0.02 2.06 16 26 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.03 0.60 6.00 -51.93 -0.31 0.29 16 28 H 0.08 1.66 5.22 -51.93 -0.27 1.39 16 29 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.08 1.15 7.24 -51.93 -0.38 0.77 16 31 H 0.15 1.96 3.70 -52.49 -0.19 1.77 16 32 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 33 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.14 1.36 7.66 -52.49 -0.40 0.95 16 35 H 0.11 1.29 6.12 -52.48 -0.32 0.97 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.09 1.08 6.96 -51.93 -0.36 0.72 16 38 H 0.08 1.25 7.91 -51.92 -0.41 0.84 16 39 H 0.02 0.36 6.18 -51.93 -0.32 0.04 16 LS Contribution 323.43 15.07 4.87 4.87 Total: -1.00 -31.22 323.43 -8.45 -39.67 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -4.34 Total: 0.84 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -2.34 Total: -8.83 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: 0.04 Total: -51.36 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -1.73 Total: -38.44 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.47 Total: 14.77 kcal Atomic # 16 Polarization: 38.96 SS G_CDS: -0.48 Total: 38.47 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.22 -8.45 -39.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751064063.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.809 kcal (2) G-P(sol) polarization free energy of solvation -31.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds