Wall clock time and date at job start Tue Mar 31 2020 14:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99931 * 2 1 4 4 H 1.48502 * 109.46909 * 275.24270 * 3 2 1 5 5 H 1.48498 * 109.47544 * 35.24839 * 3 2 1 6 6 H 1.48507 * 109.47105 * 155.24699 * 3 2 1 7 7 C 1.38815 * 120.00261 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99438 * 37.60417 * 7 2 1 9 9 N 1.36930 * 120.00239 * 217.88493 * 7 2 1 10 10 C 1.46972 * 120.59442 * 22.47964 * 9 7 2 11 11 C 1.53813 * 108.39615 * 124.75764 * 10 9 7 12 12 N 1.46969 * 108.57793 * 49.64066 * 11 10 9 13 13 S 1.65594 * 120.59247 * 124.62462 * 12 11 10 14 14 O 1.42099 * 106.40409 * 28.85072 * 13 12 11 15 15 O 1.42098 * 106.40057 * 161.77155 * 13 12 11 16 16 C 1.76198 * 107.21936 * 275.31011 * 13 12 11 17 17 C 1.37909 * 120.08738 * 345.69020 * 16 13 12 18 18 C 1.38384 * 120.17324 * 179.72137 * 17 16 13 19 19 C 1.38428 * 120.34763 * 0.54825 * 18 17 16 20 20 C 1.37862 * 120.17091 * 359.72645 * 19 18 17 21 21 C 1.39834 * 120.09002 * 165.95501 * 16 13 12 22 22 C 1.47160 * 120.17139 * 0.02989 * 21 16 13 23 23 O 1.21250 * 120.00438 * 185.73603 * 22 21 16 24 24 C 1.46964 * 118.81127 * 304.63913 * 12 11 10 25 25 C 1.46965 * 120.59717 * 202.76137 * 9 7 2 26 26 H 0.96999 * 120.00222 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.60933 * 244.54320 * 10 9 7 28 28 H 1.09001 * 109.60504 * 5.05029 * 10 9 7 29 29 H 1.08998 * 109.74544 * 289.84776 * 11 10 9 30 30 H 1.09005 * 109.67034 * 169.38785 * 11 10 9 31 31 H 1.08000 * 119.91379 * 359.97438 * 17 16 13 32 32 H 1.08001 * 119.82439 * 180.27690 * 18 17 16 33 33 H 1.08001 * 119.91363 * 179.74667 * 19 18 17 34 34 H 1.08001 * 120.08645 * 180.02562 * 20 19 18 35 35 H 1.08006 * 120.00289 * 5.74063 * 22 21 16 36 36 H 1.09001 * 109.61276 * 295.48970 * 24 12 11 37 37 H 1.09002 * 109.75036 * 175.05619 * 24 12 11 38 38 H 1.09007 * 109.60300 * 354.94486 * 25 9 7 39 39 H 1.08994 * 109.61149 * 115.28227 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3868 2.1104 -1.3942 5 1 1.5075 2.6182 0.8080 6 1 3.5988 1.4107 0.5862 7 6 2.0103 -1.2021 0.0005 8 1 1.6385 -2.0405 -0.5699 9 7 3.1632 -1.3268 0.7288 10 6 3.4290 -0.4357 1.8669 11 6 3.6943 -1.3019 3.1100 12 7 4.6909 -2.3251 2.7637 13 16 6.0856 -2.4751 3.6437 14 8 5.7786 -2.0367 4.9601 15 8 6.6048 -3.7660 3.3557 16 6 7.2416 -1.3168 2.9905 17 6 7.0083 -0.7212 1.7687 18 6 7.9121 0.1931 1.2567 19 6 9.0620 0.5087 1.9599 20 6 9.3123 -0.0824 3.1799 21 6 8.4008 -1.0032 3.7070 22 6 8.6606 -1.6391 5.0084 23 8 9.6113 -1.2896 5.6750 24 6 4.4276 -3.2125 1.6222 25 6 4.1597 -2.3500 0.3826 26 1 -0.4850 0.8400 0.0004 27 1 4.3029 0.1798 1.6533 28 1 2.5629 0.2025 2.0418 29 1 2.7697 -1.7842 3.4269 30 1 4.0765 -0.6774 3.9175 31 1 6.1158 -0.9658 1.2120 32 1 7.7216 0.6595 0.3014 33 1 9.7646 1.2201 1.5518 34 1 10.2096 0.1652 3.7276 35 1 8.0046 -2.4172 5.3699 36 1 3.5550 -3.8308 1.8331 37 1 5.2935 -3.8502 1.4440 38 1 3.7762 -2.9763 -0.4229 39 1 5.0833 -1.8676 0.0628 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751064063.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:47 Heat of formation + Delta-G solvation = -45.468314 kcal Electronic energy + Delta-G solvation = -26404.949156 eV Core-core repulsion = 22633.951023 eV Total energy + Delta-G solvation = -3770.998133 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.11528 -39.64393 -39.24158 -38.49792 -37.18632 -35.67536 -33.35006 -32.89217 -32.39611 -32.17172 -28.37945 -26.35966 -25.09696 -24.62849 -24.46679 -22.61656 -21.77218 -20.17058 -19.36441 -19.03152 -18.24958 -17.68800 -17.38706 -17.18700 -16.76001 -15.99662 -15.93473 -15.85558 -15.74244 -15.59848 -15.57254 -15.00652 -14.94177 -14.60540 -14.18429 -13.94603 -13.71150 -13.70374 -13.38626 -13.34414 -13.15874 -12.78757 -12.70248 -12.48971 -12.17533 -12.05431 -11.93206 -11.57351 -11.30365 -11.20485 -10.75339 -10.57948 -10.26569 -10.18880 -8.90329 -8.15984 -5.28301 -0.92506 -0.85070 -0.12271 1.06040 1.40867 1.52613 1.56330 1.59282 2.34787 2.38996 2.50994 2.74424 2.96189 3.30306 3.44418 3.48800 3.61963 3.70127 4.00736 4.07755 4.16326 4.17311 4.38701 4.40060 4.44687 4.48087 4.56171 4.66060 4.78635 4.83434 4.92841 5.04575 5.07405 5.09716 5.16602 5.38012 5.50724 5.61821 5.85566 5.89811 6.17506 6.95363 7.70415 8.10287 9.01223 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.017668 B = 0.004951 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.415890 B = 5654.364706 C = 6426.079009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.017 4.017 3 Si 0.889 3.111 4 H -0.306 1.306 5 H -0.305 1.305 6 H -0.220 1.220 7 C -0.257 4.257 8 H 0.055 0.945 9 N -0.607 5.607 10 C 0.122 3.878 11 C 0.105 3.895 12 N -0.984 5.984 13 S 2.691 3.309 14 O -0.973 6.973 15 O -0.966 6.966 16 C -0.633 4.633 17 C -0.053 4.053 18 C -0.100 4.100 19 C -0.072 4.072 20 C -0.079 4.079 21 C -0.121 4.121 22 C 0.371 3.629 23 O -0.457 6.457 24 C 0.100 3.900 25 C 0.125 3.875 26 H 0.260 0.740 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.101 0.899 31 H 0.149 0.851 32 H 0.165 0.835 33 H 0.176 0.824 34 H 0.155 0.845 35 H 0.108 0.892 36 H 0.077 0.923 37 H 0.112 0.888 38 H 0.080 0.920 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.338 -0.686 3.570 18.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.214 4.214 3 Si 0.717 3.283 4 H -0.235 1.235 5 H -0.233 1.233 6 H -0.143 1.143 7 C -0.386 4.386 8 H 0.073 0.927 9 N -0.331 5.331 10 C -0.005 4.005 11 C -0.021 4.021 12 N -0.824 5.824 13 S 2.782 3.218 14 O -0.963 6.963 15 O -0.957 6.957 16 C -0.720 4.720 17 C -0.071 4.071 18 C -0.118 4.118 19 C -0.090 4.090 20 C -0.098 4.098 21 C -0.124 4.124 22 C 0.229 3.771 23 O -0.330 6.330 24 C -0.026 4.026 25 C -0.002 4.002 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.119 0.881 31 H 0.167 0.833 32 H 0.182 0.818 33 H 0.193 0.807 34 H 0.173 0.827 35 H 0.125 0.875 36 H 0.095 0.905 37 H 0.130 0.870 38 H 0.098 0.902 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 18.860 -1.026 4.627 19.446 hybrid contribution -0.367 1.426 -0.771 1.662 sum 18.493 0.400 3.856 18.895 Atomic orbital electron populations 1.70231 1.07942 1.27308 1.51943 1.25610 0.95093 1.00436 1.00265 0.86800 0.82559 0.81949 0.77015 1.23498 1.23252 1.14268 1.18733 0.97831 0.95955 1.26073 0.92695 1.44288 1.19970 1.38119 1.30700 1.21954 0.99342 0.92298 0.86920 1.22182 0.92309 0.89775 0.97858 1.57292 1.33021 1.45671 1.46400 1.02051 0.72606 0.73773 0.73324 1.93591 1.84038 1.83148 1.35503 1.93589 1.79520 1.37398 1.85161 1.31098 1.13681 1.20154 1.07023 1.21416 0.99758 0.93760 0.92200 1.22009 0.93200 0.95438 1.01178 1.21903 0.96904 0.97318 0.92861 1.21827 0.98685 0.93117 0.96162 1.20493 0.95324 1.00047 0.96531 1.24431 0.84811 0.83590 0.84236 1.90492 1.27888 1.58651 1.55964 1.22192 1.03366 0.91814 0.85186 1.21623 0.92171 0.90901 0.95460 0.93150 0.93036 0.92351 0.90619 0.88082 0.83328 0.81760 0.80654 0.82737 0.87547 0.90471 0.86959 0.90167 0.93017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.43 13.97 21.65 0.30 -54.13 16 2 C -0.02 -0.89 4.84 84.86 0.41 -0.47 16 3 Si 0.89 39.80 26.30 68.60 1.80 41.60 16 4 H -0.31 -14.24 7.11 99.48 0.71 -13.53 16 5 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.22 -8.38 4.85 99.48 0.48 -7.90 16 7 C -0.26 -12.87 9.88 84.04 0.83 -12.04 16 8 H 0.06 3.02 8.03 -2.91 -0.02 2.99 16 9 N -0.61 -23.92 2.76 -697.32 -1.93 -25.85 16 10 C 0.12 4.32 4.34 86.56 0.38 4.70 16 11 C 0.11 3.18 6.55 86.56 0.57 3.74 16 12 N -0.98 -27.18 2.31 -511.41 -1.18 -28.36 16 13 S 2.69 73.41 4.50 -56.49 -0.25 73.16 16 14 O -0.97 -29.81 15.30 -128.00 -1.96 -31.77 16 15 O -0.97 -28.82 16.56 -128.00 -2.12 -30.93 16 16 C -0.63 -15.41 5.87 22.58 0.13 -15.28 16 17 C -0.05 -1.13 9.47 22.23 0.21 -0.92 16 18 C -0.10 -1.64 10.04 22.35 0.22 -1.41 16 19 C -0.07 -1.02 10.03 22.23 0.22 -0.80 16 20 C -0.08 -1.48 9.60 22.58 0.22 -1.27 16 21 C -0.12 -2.91 5.87 -20.15 -0.12 -3.03 16 22 C 0.37 9.57 10.59 70.16 0.74 10.31 16 23 O -0.46 -13.10 17.18 -2.94 -0.05 -13.15 16 24 C 0.10 2.66 6.50 86.42 0.56 3.22 16 25 C 0.12 3.74 6.18 86.42 0.53 4.28 16 26 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 27 H 0.05 1.65 6.00 -2.39 -0.01 1.64 16 28 H 0.06 2.34 5.22 -2.39 -0.01 2.33 16 29 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.10 2.65 7.24 -2.38 -0.02 2.63 16 31 H 0.15 3.25 3.70 -2.91 -0.01 3.24 16 32 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 33 H 0.18 1.14 8.06 -2.91 -0.02 1.11 16 34 H 0.15 2.44 7.66 -2.91 -0.02 2.42 16 35 H 0.11 2.60 6.12 -2.91 -0.02 2.58 16 36 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.11 2.47 6.96 -2.39 -0.02 2.45 16 38 H 0.08 2.40 7.91 -2.38 -0.02 2.38 16 39 H 0.05 1.32 6.18 -2.39 -0.01 1.31 16 Total: -1.00 -68.47 323.43 0.40 -68.07 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 0.87 Total: 10.34 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: 4.91 Total: -8.98 kcal Atomic # 7 Polarization: -105.53 SS G_CDS: -2.81 Total: -108.34 kcal Atomic # 8 Polarization: -71.73 SS G_CDS: -4.13 Total: -75.86 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 1.80 Total: 41.60 kcal Atomic # 16 Polarization: 73.41 SS G_CDS: -0.25 Total: 73.16 kcal Total: -68.47 0.40 -68.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751064063.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.603 kcal (2) G-P(sol) polarization free energy of solvation -68.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds