Wall clock time and date at job start Tue Mar 31 2020 14:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34226 * 117.00193 * 2 1 4 4 O 1.20825 * 119.99943 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99782 * 179.97438 * 3 2 1 6 6 C 1.50699 * 109.46892 * 180.02562 * 5 3 2 7 7 C 1.38258 * 119.99734 * 265.01848 * 6 5 3 8 8 C 1.38213 * 120.00082 * 179.97438 * 7 6 5 9 9 C 1.38263 * 119.99986 * 0.02562 * 8 7 6 10 10 C 1.38215 * 119.99577 * 359.70149 * 9 8 7 11 11 C 1.38209 * 120.00423 * 84.99936 * 6 5 3 12 12 C 1.50701 * 119.99797 * 0.02562 * 11 6 5 13 13 O 1.45198 * 109.47036 * 179.97438 * 12 11 6 14 14 C 1.34231 * 116.99983 * 179.97438 * 13 12 11 15 15 O 1.20822 * 120.00142 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00053 * 180.02562 * 14 13 12 17 17 S 1.81001 * 109.47467 * 180.02562 * 16 14 13 18 18 C 1.76193 * 100.00252 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00149 * 359.97438 * 18 17 16 20 20 C 1.38803 * 120.00204 * 180.02562 * 18 17 16 21 21 N 1.31635 * 119.99450 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00321 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47328 * 89.99507 * 22 20 18 24 24 H 1.48503 * 109.46932 * 209.99841 * 22 20 18 25 25 H 1.48498 * 109.46795 * 329.99555 * 22 20 18 26 26 H 1.08996 * 109.47527 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47307 * 299.99896 * 1 2 3 28 28 H 1.09001 * 109.47216 * 59.99562 * 1 2 3 29 29 H 1.08994 * 109.47345 * 60.00079 * 5 3 2 30 30 H 1.09006 * 109.46918 * 299.99839 * 5 3 2 31 31 H 1.08002 * 120.00011 * 0.02562 * 7 6 5 32 32 H 1.07994 * 120.00169 * 180.02562 * 8 7 6 33 33 H 1.07998 * 119.99986 * 179.97438 * 9 8 7 34 34 H 1.08004 * 119.99524 * 180.29857 * 10 9 8 35 35 H 1.09002 * 109.47060 * 299.99979 * 12 11 6 36 36 H 1.09001 * 109.47380 * 60.00066 * 12 11 6 37 37 H 1.09008 * 109.47488 * 300.00148 * 16 14 13 38 38 H 1.09001 * 109.47517 * 59.99934 * 16 14 13 39 39 H 0.97004 * 119.99652 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2747 0.0006 6 6 3.9937 2.7198 0.0011 7 6 4.2898 3.3535 -1.1915 8 6 4.6812 4.6791 -1.1912 9 6 4.7771 5.3713 0.0019 10 6 4.4756 4.7393 1.1935 11 6 4.0891 3.4119 1.1936 12 6 3.7665 2.7211 2.4936 13 8 3.9418 3.6529 3.5933 14 6 3.6923 3.1913 4.8287 15 8 3.3394 2.0465 4.9861 16 6 3.8522 4.1009 6.0195 17 16 3.4460 3.1927 7.5316 18 6 3.7110 4.4577 8.7290 19 1 4.0306 5.4403 8.4148 20 6 3.5101 4.1911 10.0763 21 7 3.1211 2.9933 10.4593 22 14 3.7904 5.5325 11.3458 23 1 2.5269 6.2825 11.5607 24 1 4.2259 4.9190 12.6261 25 1 4.8414 6.4622 10.8596 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 3.9564 0.7804 -0.8891 30 1 3.9556 0.7807 0.8909 31 1 4.2145 2.8129 -2.1235 32 1 4.9122 5.1742 -2.1227 33 1 5.0834 6.4069 0.0022 34 1 4.5459 5.2814 2.1250 35 1 2.7339 2.3727 2.4733 36 1 4.4344 1.8704 2.6286 37 1 4.8828 4.4521 6.0729 38 1 3.1823 4.9548 5.9172 39 1 2.9811 2.8069 11.4009 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751666417.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:28 Heat of formation + Delta-G solvation = -168.579393 kcal Electronic energy + Delta-G solvation = -23965.753750 eV Core-core repulsion = 20157.124368 eV Total energy + Delta-G solvation = -3808.629381 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.91025 -41.47331 -40.19671 -37.68557 -37.54890 -34.62006 -34.35573 -32.99380 -31.30564 -29.89590 -28.10126 -27.72411 -27.20970 -23.71322 -22.88758 -22.07300 -21.40590 -19.92306 -18.80364 -18.74287 -18.07554 -17.85489 -17.62969 -17.47586 -16.90729 -16.69479 -16.27463 -15.95202 -15.61475 -15.44864 -14.68531 -14.61646 -14.49658 -14.44415 -14.13180 -13.85911 -13.56642 -13.28076 -13.18930 -13.15955 -12.97782 -12.90489 -12.67395 -12.07371 -12.01178 -11.97002 -11.84711 -11.79241 -11.68333 -11.67244 -11.16814 -10.40135 -9.79167 -9.67355 -8.75217 -8.38464 -6.18426 0.22315 0.41416 0.95231 1.04964 1.10177 1.39986 1.42911 1.54577 1.77603 1.81017 2.22912 2.79280 2.96737 3.22366 3.40477 3.58218 3.72077 3.90524 3.93401 4.00808 4.06904 4.15931 4.22103 4.26140 4.26643 4.30581 4.41170 4.47644 4.60000 4.67261 4.72532 4.94690 5.06324 5.12863 5.33390 5.40369 5.48503 5.54344 5.60304 6.02533 6.17280 6.59601 6.65024 7.03310 8.70846 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.016510 B = 0.002629 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.500130 B =10647.166246 C =11983.529806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.458 3.542 4 O -0.533 6.533 5 C -0.078 4.078 6 C -0.081 4.081 7 C -0.104 4.104 8 C -0.118 4.118 9 C -0.118 4.118 10 C -0.117 4.117 11 C -0.092 4.092 12 C 0.106 3.894 13 O -0.345 6.345 14 C 0.489 3.511 15 O -0.518 6.518 16 C -0.108 4.108 17 S -0.136 6.136 18 C -0.549 4.549 19 H 0.086 0.914 20 C 0.016 3.984 21 N -0.910 5.910 22 Si 1.000 3.000 23 H -0.268 1.268 24 H -0.277 1.277 25 H -0.258 1.258 26 H 0.132 0.868 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.157 0.843 30 H 0.124 0.876 31 H 0.154 0.846 32 H 0.154 0.846 33 H 0.145 0.855 34 H 0.127 0.873 35 H 0.065 0.935 36 H 0.095 0.905 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.694 -0.502 -27.575 27.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.302 3.698 4 O -0.422 6.422 5 C -0.115 4.115 6 C -0.081 4.081 7 C -0.122 4.122 8 C -0.136 4.136 9 C -0.136 4.136 10 C -0.135 4.135 11 C -0.092 4.092 12 C 0.033 3.967 13 O -0.262 6.262 14 C 0.331 3.669 15 O -0.406 6.406 16 C -0.256 4.256 17 S 0.091 5.909 18 C -0.696 4.696 19 H 0.104 0.896 20 C -0.189 4.189 21 N -0.546 5.546 22 Si 0.822 3.178 23 H -0.193 1.193 24 H -0.202 1.202 25 H -0.181 1.181 26 H 0.150 0.850 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.175 0.825 30 H 0.142 0.858 31 H 0.171 0.829 32 H 0.171 0.829 33 H 0.163 0.837 34 H 0.145 0.855 35 H 0.083 0.917 36 H 0.113 0.887 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.972 -1.776 -27.296 27.424 hybrid contribution -0.100 1.651 0.983 1.924 sum 1.873 -0.124 -26.313 26.379 Atomic orbital electron populations 1.23520 0.75015 1.05686 1.02266 1.86494 1.24794 1.32862 1.83775 1.24149 0.92802 0.81192 0.71619 1.90704 1.67991 1.37377 1.46150 1.20502 0.86500 0.95225 1.09290 1.19097 1.01516 0.94716 0.92750 1.21298 0.98209 0.95472 0.97184 1.21542 0.98630 0.94408 0.99021 1.21505 0.98936 1.01110 0.92030 1.21146 0.98869 0.93843 0.99687 1.19430 1.02006 0.95552 0.92240 1.21827 1.01572 0.91217 0.82110 1.86440 1.80262 1.44421 1.15084 1.23057 0.72822 0.87065 0.83944 1.90660 1.43213 1.20554 1.86183 1.23095 1.08110 1.01543 0.92875 1.85526 1.89560 1.19865 0.95931 1.23195 1.53781 0.99108 0.93537 0.89558 1.26124 0.93744 0.98948 1.00088 1.70166 1.44262 1.22473 1.17698 0.84926 0.79084 0.77338 0.76487 1.19341 1.20192 1.18143 0.84993 0.93052 0.91442 0.82547 0.85787 0.82879 0.82867 0.83709 0.85498 0.91701 0.88702 0.85675 0.86087 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.64 16 2 O -0.36 -7.11 10.56 -51.38 -0.54 -7.65 16 3 C 0.46 9.91 7.60 71.24 0.54 10.45 16 4 O -0.53 -15.34 15.78 21.97 0.35 -14.99 16 5 C -0.08 -1.19 5.45 29.10 0.16 -1.03 16 6 C -0.08 -1.55 4.37 -19.87 -0.09 -1.64 16 7 C -0.10 -1.59 9.68 22.27 0.22 -1.37 16 8 C -0.12 -1.74 10.05 22.27 0.22 -1.52 16 9 C -0.12 -2.10 10.05 22.27 0.22 -1.88 16 10 C -0.12 -2.72 9.38 22.27 0.21 -2.52 16 11 C -0.09 -2.23 5.88 -19.87 -0.12 -2.35 16 12 C 0.11 2.99 4.64 71.24 0.33 3.32 16 13 O -0.35 -11.19 8.69 -51.42 -0.45 -11.64 16 14 C 0.49 19.03 7.98 71.24 0.57 19.59 16 15 O -0.52 -23.33 15.61 21.98 0.34 -22.98 16 16 C -0.11 -4.37 6.27 71.24 0.45 -3.93 16 17 S -0.14 -7.40 20.57 -56.49 -1.16 -8.56 16 18 C -0.55 -30.85 9.50 67.96 0.65 -30.20 16 19 H 0.09 4.51 7.80 -2.91 -0.02 4.48 16 20 C 0.02 0.90 5.49 84.86 0.47 1.37 16 21 N -0.91 -54.93 13.22 21.65 0.29 -54.65 16 22 Si 1.00 43.03 29.55 68.60 2.03 45.05 16 23 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 24 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 25 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 26 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.05 0.95 8.13 -2.38 -0.02 0.93 16 28 H 0.07 0.98 8.13 -2.39 -0.02 0.97 16 29 H 0.16 1.13 8.05 -2.39 -0.02 1.12 16 30 H 0.12 1.72 6.84 -2.38 -0.02 1.70 16 31 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 32 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 33 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 34 H 0.13 3.06 6.99 -2.91 -0.02 3.04 16 35 H 0.06 2.01 7.78 -2.39 -0.02 1.99 16 36 H 0.10 2.41 7.50 -2.39 -0.02 2.39 16 37 H 0.13 4.55 8.14 -2.39 -0.02 4.53 16 38 H 0.12 4.49 8.14 -2.39 -0.02 4.47 16 39 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -77.59 360.34 6.94 -70.65 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 1.07 Total: 14.83 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: 5.02 Total: -10.06 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: 0.29 Total: -54.65 kcal Atomic # 8 Polarization: -56.96 SS G_CDS: -0.30 Total: -57.26 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: -7.40 SS G_CDS: -1.16 Total: -8.56 kcal Total: -77.59 6.94 -70.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751666417.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.929 kcal (2) G-P(sol) polarization free energy of solvation -77.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds