Wall clock time and date at job start Tue Mar 31 2020 13:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86795 * 120.00533 * 2 1 4 4 H 1.48495 * 109.47305 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47381 * 300.00182 * 3 2 1 6 6 H 1.48506 * 109.47029 * 59.99673 * 3 2 1 7 7 C 1.40038 * 119.99440 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99695 * 196.95809 * 7 2 1 9 9 C 1.41543 * 120.00171 * 16.96570 * 7 2 1 10 10 C 1.41166 * 120.99774 * 203.58908 * 9 7 2 11 11 C 1.37589 * 119.01756 * 180.02562 * 10 9 7 12 12 N 1.32085 * 121.10778 * 0.02562 * 11 10 9 13 13 C 1.32466 * 122.23227 * 359.97438 * 12 11 10 14 14 N 1.39466 * 119.58138 * 179.97438 * 13 12 11 15 15 C 1.34782 * 119.99832 * 5.23677 * 14 13 12 16 16 O 1.21273 * 120.00128 * 355.14580 * 15 14 13 17 17 C 1.50699 * 119.99843 * 175.14628 * 15 14 13 18 18 C 1.52999 * 109.47052 * 179.97438 * 17 15 14 19 19 H 1.08998 * 109.38314 * 304.78669 * 18 17 15 20 20 C 1.52635 * 109.38615 * 184.99975 * 18 17 15 21 21 S 1.81172 * 109.99440 * 173.09419 * 20 18 17 22 22 C 1.81172 * 103.31287 * 62.61596 * 21 20 18 23 23 C 1.52640 * 109.99081 * 297.38277 * 22 21 20 24 24 S 1.81169 * 109.90679 * 66.90772 * 23 22 21 25 25 C 1.38597 * 120.84205 * 0.26225 * 13 12 11 26 26 H 0.96998 * 119.99218 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.49180 * 359.97211 * 10 9 7 28 28 H 1.07997 * 119.44847 * 179.97438 * 11 10 9 29 29 H 0.97003 * 120.00229 * 185.22481 * 14 13 12 30 30 H 1.08994 * 109.47356 * 59.99610 * 17 15 14 31 31 H 1.09007 * 109.47002 * 299.99245 * 17 15 14 32 32 H 1.09000 * 109.38699 * 52.93453 * 20 18 17 33 33 H 1.09004 * 109.38046 * 293.25419 * 20 18 17 34 34 H 1.09007 * 109.38593 * 177.22964 * 22 21 20 35 35 H 1.09001 * 109.38865 * 57.54292 * 22 21 20 36 36 H 1.09003 * 109.38238 * 187.01327 * 23 22 21 37 37 H 1.08994 * 109.38790 * 306.79827 * 23 22 21 38 38 H 1.07995 * 120.61005 * 179.74491 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6176 0.0000 4 1 3.7015 1.3462 0.0006 5 1 1.8829 2.3964 -1.2125 6 1 1.8828 2.3964 1.2125 7 6 2.0075 -1.2128 0.0005 8 1 3.0523 -1.2331 0.2734 9 6 1.3459 -2.4121 -0.3566 10 6 1.8232 -3.6650 0.0852 11 6 1.1487 -4.8051 -0.2868 12 7 0.0696 -4.7425 -1.0460 13 6 -0.4186 -3.5926 -1.4866 14 7 -1.5615 -3.5909 -2.2858 15 6 -2.2227 -4.7421 -2.5186 16 8 -1.7761 -5.7918 -2.1070 17 6 -3.5170 -4.7248 -3.2903 18 6 -4.0566 -6.1512 -3.4131 19 1 -3.2945 -6.7890 -3.8610 20 6 -5.2994 -6.1482 -4.2992 21 16 -5.8340 -7.8488 -4.6223 22 6 -6.2499 -8.4757 -2.9742 23 6 -5.0071 -8.4787 -2.0881 24 16 -4.4755 -6.7772 -1.7651 25 6 0.1953 -2.3915 -1.1682 26 1 -0.4849 0.8401 -0.0004 27 1 2.7052 -3.7278 0.7053 28 1 1.5079 -5.7673 0.0470 29 1 -1.8806 -2.7613 -2.6741 30 1 -3.3413 -4.3162 -4.2853 31 1 -4.2443 -4.1048 -2.7660 32 1 -5.0690 -5.6558 -5.2439 33 1 -6.1007 -5.6064 -3.7966 34 1 -6.6354 -9.4917 -3.0601 35 1 -7.0120 -7.8379 -2.5262 36 1 -5.2376 -8.9712 -1.1433 37 1 -4.2052 -9.0189 -2.5913 38 1 -0.2035 -1.4565 -1.5328 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000752126063.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:11 Heat of formation + Delta-G solvation = -0.328144 kcal Electronic energy + Delta-G solvation = -22093.614177 eV Core-core repulsion = 18767.326339 eV Total energy + Delta-G solvation = -3326.287838 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.63202 -37.88253 -35.02187 -34.25042 -33.70246 -33.19187 -30.56264 -29.28607 -27.64271 -25.99280 -24.09702 -22.97365 -21.94957 -21.21065 -19.66568 -17.69705 -17.51844 -16.97944 -16.45008 -15.82136 -15.69983 -15.19778 -14.66630 -14.37741 -14.21602 -14.05285 -14.03674 -13.62986 -13.43410 -13.26376 -12.85814 -12.67523 -12.57707 -12.43405 -11.95904 -11.55828 -11.43657 -11.21756 -10.96272 -10.90219 -10.40780 -10.28590 -10.14623 -9.77420 -9.71319 -9.37550 -9.32006 -8.15987 -8.00278 -7.74735 -7.51202 -7.01589 -6.81899 -4.61717 1.29552 1.54411 2.08759 2.44188 2.57386 2.76480 3.00552 3.06041 3.19973 3.47023 3.59049 3.83664 4.33279 4.41158 4.57780 4.66065 4.71157 4.76198 4.99687 5.10277 5.18780 5.28043 5.31161 5.40746 5.50775 5.68542 5.73426 6.01820 6.59234 6.65878 6.81351 6.94439 7.09669 7.39628 7.46843 7.77443 7.93417 8.21957 8.42844 8.70386 8.73993 8.90727 9.70618 10.04938 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.028050 B = 0.002676 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.994997 B =10461.036555 C =11010.616941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.078 3.922 3 Si 0.910 3.090 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.456 4.456 8 H 0.082 0.918 9 C 0.143 3.857 10 C -0.286 4.286 11 C 0.119 3.881 12 N -0.552 5.552 13 C 0.339 3.661 14 N -0.660 5.660 15 C 0.491 3.509 16 O -0.456 6.456 17 C -0.124 4.124 18 C -0.043 4.043 19 H 0.108 0.892 20 C -0.083 4.083 21 S -0.256 6.256 22 C -0.087 4.087 23 C -0.100 4.100 24 S -0.209 6.209 25 C -0.245 4.245 26 H 0.281 0.719 27 H 0.101 0.899 28 H 0.123 0.877 29 H 0.406 0.594 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.095 0.905 36 H 0.114 0.886 37 H 0.096 0.904 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.650 -7.216 -7.912 16.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.141 4.141 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.487 4.487 8 H 0.100 0.900 9 C 0.135 3.865 10 C -0.310 4.310 11 C -0.035 4.035 12 N -0.271 5.271 13 C 0.114 3.886 14 N -0.306 5.306 15 C 0.274 3.726 16 O -0.324 6.324 17 C -0.167 4.167 18 C -0.174 4.174 19 H 0.126 0.874 20 C -0.233 4.233 21 S -0.027 6.027 22 C -0.237 4.237 23 C -0.250 4.250 24 S 0.019 5.981 25 C -0.271 4.271 26 H 0.092 0.908 27 H 0.119 0.881 28 H 0.140 0.860 29 H 0.240 0.760 30 H 0.124 0.876 31 H 0.118 0.882 32 H 0.134 0.866 33 H 0.116 0.884 34 H 0.131 0.869 35 H 0.113 0.887 36 H 0.132 0.868 37 H 0.115 0.885 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.054 -8.705 -7.850 17.545 hybrid contribution 0.553 2.111 0.134 2.186 sum -12.501 -6.594 -7.716 16.102 Atomic orbital electron populations 1.69797 1.07689 1.29262 1.34502 1.25962 0.94759 1.01488 0.91887 0.86226 0.81066 0.80638 0.78628 1.18276 1.19624 1.19890 1.19607 0.97956 0.90708 1.40395 0.89961 1.17564 0.89843 0.92268 0.86823 1.21888 1.05290 0.93916 1.09858 1.21757 0.90953 0.96777 0.93992 1.67227 1.15353 1.26447 1.18091 1.18171 0.87191 0.90801 0.92420 1.43414 1.26510 1.10557 1.50153 1.20347 0.85773 0.84664 0.81783 1.90840 1.65574 1.29320 1.46690 1.21567 0.96825 0.95681 1.02625 1.23065 0.98918 0.99843 0.95620 0.87406 1.23662 0.99736 0.95807 1.04110 1.86760 1.86436 1.15136 1.14411 1.23584 1.00098 1.05359 0.94669 1.23571 0.99327 0.98188 1.03904 1.87222 1.85030 1.12639 1.13165 1.21526 1.02664 0.95526 1.07354 0.90802 0.88056 0.85957 0.75963 0.87611 0.88163 0.86570 0.88433 0.86905 0.88653 0.86778 0.88534 0.85566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.25 10.93 55.55 0.61 -18.64 16 2 C 0.08 1.87 5.20 -17.34 -0.09 1.78 16 3 Si 0.91 17.77 29.59 -169.99 -5.03 12.74 16 4 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 5 H -0.27 -5.18 7.11 56.52 0.40 -4.77 16 6 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.46 -11.68 9.12 -37.65 -0.34 -12.02 16 8 H 0.08 2.03 7.90 -52.49 -0.41 1.61 16 9 C 0.14 3.76 5.60 -106.55 -0.60 3.17 16 10 C -0.29 -7.04 9.90 -38.71 -0.38 -7.43 16 11 C 0.12 2.89 11.15 -17.68 -0.20 2.69 16 12 N -0.55 -14.03 7.85 -12.52 -0.10 -14.13 16 13 C 0.34 8.14 7.42 -154.71 -1.15 6.99 16 14 N -0.66 -12.55 5.39 -11.49 -0.06 -12.61 16 15 C 0.49 8.77 7.49 -10.98 -0.08 8.69 16 16 O -0.46 -9.97 13.02 5.56 0.07 -9.90 16 17 C -0.12 -1.46 5.16 -27.88 -0.14 -1.60 16 18 C -0.04 -0.51 2.03 -26.92 -0.05 -0.57 16 19 H 0.11 1.47 7.96 -51.92 -0.41 1.06 16 20 C -0.08 -0.75 5.53 36.97 0.20 -0.54 16 21 S -0.26 -2.53 22.05 -107.50 -2.37 -4.90 16 22 C -0.09 -0.73 6.25 36.97 0.23 -0.50 16 23 C -0.10 -1.02 6.26 36.97 0.23 -0.79 16 24 S -0.21 -2.87 19.80 -107.50 -2.13 -5.00 16 25 C -0.25 -6.17 8.62 -38.47 -0.33 -6.50 16 26 H 0.28 6.18 8.29 -40.82 -0.34 5.85 16 27 H 0.10 2.30 8.06 -52.49 -0.42 1.87 16 28 H 0.12 2.60 8.06 -52.49 -0.42 2.17 16 29 H 0.41 6.23 8.70 -40.82 -0.35 5.88 16 30 H 0.11 0.92 8.13 -51.93 -0.42 0.50 16 31 H 0.10 1.05 8.14 -51.92 -0.42 0.63 16 32 H 0.12 0.86 8.13 -51.92 -0.42 0.44 16 33 H 0.10 0.81 8.14 -51.91 -0.42 0.39 16 34 H 0.11 0.76 8.14 -51.91 -0.42 0.33 16 35 H 0.09 0.77 8.14 -51.92 -0.42 0.34 16 36 H 0.11 1.01 8.14 -51.92 -0.42 0.59 16 37 H 0.10 1.05 8.14 -51.92 -0.42 0.63 16 38 H 0.13 3.14 6.20 -52.49 -0.33 2.82 16 LS Contribution 339.96 15.07 5.12 5.12 Total: -1.00 -31.68 339.96 -11.46 -43.14 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -4.87 Total: 10.81 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -2.70 Total: -6.64 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: 0.45 Total: -45.37 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.07 Total: -9.90 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.74 kcal Atomic # 16 Polarization: -5.40 SS G_CDS: -4.50 Total: -9.90 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.68 -11.46 -43.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752126063.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.811 kcal (2) G-P(sol) polarization free energy of solvation -31.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds