Wall clock time and date at job start Tue Mar 31 2020 13:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86795 * 120.00533 * 2 1 4 4 H 1.48495 * 109.47305 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47381 * 300.00182 * 3 2 1 6 6 H 1.48506 * 109.47029 * 59.99673 * 3 2 1 7 7 C 1.40038 * 119.99440 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99695 * 196.95809 * 7 2 1 9 9 C 1.41543 * 120.00171 * 16.96570 * 7 2 1 10 10 C 1.41166 * 120.99774 * 203.58908 * 9 7 2 11 11 C 1.37589 * 119.01756 * 180.02562 * 10 9 7 12 12 N 1.32085 * 121.10778 * 0.02562 * 11 10 9 13 13 C 1.32466 * 122.23227 * 359.97438 * 12 11 10 14 14 N 1.39466 * 119.58138 * 179.97438 * 13 12 11 15 15 C 1.34782 * 119.99832 * 5.23677 * 14 13 12 16 16 O 1.21273 * 120.00128 * 355.14580 * 15 14 13 17 17 C 1.50699 * 119.99843 * 175.14628 * 15 14 13 18 18 C 1.52999 * 109.47052 * 179.97438 * 17 15 14 19 19 H 1.08998 * 109.38314 * 304.78669 * 18 17 15 20 20 C 1.52635 * 109.38615 * 184.99975 * 18 17 15 21 21 S 1.81172 * 109.99440 * 173.09419 * 20 18 17 22 22 C 1.81172 * 103.31287 * 62.61596 * 21 20 18 23 23 C 1.52640 * 109.99081 * 297.38277 * 22 21 20 24 24 S 1.81169 * 109.90679 * 66.90772 * 23 22 21 25 25 C 1.38597 * 120.84205 * 0.26225 * 13 12 11 26 26 H 0.96998 * 119.99218 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.49180 * 359.97211 * 10 9 7 28 28 H 1.07997 * 119.44847 * 179.97438 * 11 10 9 29 29 H 0.97003 * 120.00229 * 185.22481 * 14 13 12 30 30 H 1.08994 * 109.47356 * 59.99610 * 17 15 14 31 31 H 1.09007 * 109.47002 * 299.99245 * 17 15 14 32 32 H 1.09000 * 109.38699 * 52.93453 * 20 18 17 33 33 H 1.09004 * 109.38046 * 293.25419 * 20 18 17 34 34 H 1.09007 * 109.38593 * 177.22964 * 22 21 20 35 35 H 1.09001 * 109.38865 * 57.54292 * 22 21 20 36 36 H 1.09003 * 109.38238 * 187.01327 * 23 22 21 37 37 H 1.08994 * 109.38790 * 306.79827 * 23 22 21 38 38 H 1.07995 * 120.61005 * 179.74491 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6176 0.0000 4 1 3.7015 1.3462 0.0006 5 1 1.8829 2.3964 -1.2125 6 1 1.8828 2.3964 1.2125 7 6 2.0075 -1.2128 0.0005 8 1 3.0523 -1.2331 0.2734 9 6 1.3459 -2.4121 -0.3566 10 6 1.8232 -3.6650 0.0852 11 6 1.1487 -4.8051 -0.2868 12 7 0.0696 -4.7425 -1.0460 13 6 -0.4186 -3.5926 -1.4866 14 7 -1.5615 -3.5909 -2.2858 15 6 -2.2227 -4.7421 -2.5186 16 8 -1.7761 -5.7918 -2.1070 17 6 -3.5170 -4.7248 -3.2903 18 6 -4.0566 -6.1512 -3.4131 19 1 -3.2945 -6.7890 -3.8610 20 6 -5.2994 -6.1482 -4.2992 21 16 -5.8340 -7.8488 -4.6223 22 6 -6.2499 -8.4757 -2.9742 23 6 -5.0071 -8.4787 -2.0881 24 16 -4.4755 -6.7772 -1.7651 25 6 0.1953 -2.3915 -1.1682 26 1 -0.4849 0.8401 -0.0004 27 1 2.7052 -3.7278 0.7053 28 1 1.5079 -5.7673 0.0470 29 1 -1.8806 -2.7613 -2.6741 30 1 -3.3413 -4.3162 -4.2853 31 1 -4.2443 -4.1048 -2.7660 32 1 -5.0690 -5.6558 -5.2439 33 1 -6.1007 -5.6064 -3.7966 34 1 -6.6354 -9.4917 -3.0601 35 1 -7.0120 -7.8379 -2.5262 36 1 -5.2376 -8.9712 -1.1433 37 1 -4.2052 -9.0189 -2.5913 38 1 -0.2035 -1.4565 -1.5328 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000752126063.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:11 Heat of formation + Delta-G solvation = -18.159240 kcal Electronic energy + Delta-G solvation = -22094.387391 eV Core-core repulsion = 18767.326339 eV Total energy + Delta-G solvation = -3327.061052 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.20900 -39.59072 -36.26707 -35.77375 -35.39187 -33.99426 -32.45582 -30.82142 -28.88095 -27.89387 -24.86804 -24.19248 -23.79117 -22.65402 -21.21394 -19.43242 -18.75495 -18.07497 -17.52680 -17.37167 -16.91465 -16.69761 -16.06652 -15.85160 -15.77430 -15.21224 -15.11941 -14.85811 -14.63876 -14.42150 -14.32323 -14.01777 -13.94744 -13.57075 -13.20589 -13.01863 -12.91369 -12.66100 -12.46076 -12.05769 -11.90449 -11.75761 -11.44761 -11.21603 -11.12272 -10.93440 -10.60357 -9.93630 -9.56486 -8.96075 -8.83735 -8.63757 -8.55132 -6.55716 0.54741 0.67899 0.78248 1.00357 1.33623 1.41348 1.54070 1.56827 1.57305 1.95966 2.19428 2.21597 2.81254 3.38123 3.60473 3.65023 3.76634 3.90918 4.00102 4.02065 4.25570 4.33087 4.36624 4.53019 4.57314 4.59629 4.73616 4.77521 4.82247 4.89064 4.94440 5.10627 5.22812 5.49744 5.68159 5.91630 6.17080 6.49724 6.65126 6.80744 6.83860 7.39416 7.87885 8.26402 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.028050 B = 0.002676 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.994997 B =10461.036555 C =11010.616941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.040 3.960 3 Si 0.987 3.013 4 H -0.260 1.260 5 H -0.260 1.260 6 H -0.266 1.266 7 C -0.486 4.486 8 H 0.082 0.918 9 C 0.114 3.886 10 C -0.302 4.302 11 C 0.113 3.887 12 N -0.575 5.575 13 C 0.337 3.663 14 N -0.655 5.655 15 C 0.485 3.515 16 O -0.500 6.500 17 C -0.110 4.110 18 C -0.026 4.026 19 H 0.086 0.914 20 C -0.072 4.072 21 S -0.280 6.280 22 C -0.077 4.077 23 C -0.082 4.082 24 S -0.285 6.285 25 C -0.263 4.263 26 H 0.293 0.707 27 H 0.113 0.887 28 H 0.146 0.854 29 H 0.422 0.578 30 H 0.147 0.853 31 H 0.121 0.879 32 H 0.140 0.860 33 H 0.110 0.890 34 H 0.135 0.865 35 H 0.103 0.897 36 H 0.126 0.874 37 H 0.086 0.914 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.023 -6.186 -9.086 17.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.177 4.177 3 Si 0.807 3.193 4 H -0.183 1.183 5 H -0.184 1.184 6 H -0.191 1.191 7 C -0.516 4.516 8 H 0.100 0.900 9 C 0.106 3.894 10 C -0.326 4.326 11 C -0.041 4.041 12 N -0.295 5.295 13 C 0.111 3.889 14 N -0.303 5.303 15 C 0.271 3.729 16 O -0.370 6.370 17 C -0.153 4.153 18 C -0.158 4.158 19 H 0.104 0.896 20 C -0.222 4.222 21 S -0.052 6.052 22 C -0.227 4.227 23 C -0.232 4.232 24 S -0.057 6.057 25 C -0.289 4.289 26 H 0.104 0.896 27 H 0.131 0.869 28 H 0.164 0.836 29 H 0.259 0.741 30 H 0.165 0.835 31 H 0.139 0.861 32 H 0.158 0.842 33 H 0.128 0.872 34 H 0.153 0.847 35 H 0.121 0.879 36 H 0.144 0.856 37 H 0.105 0.895 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.467 -7.677 -9.050 18.711 hybrid contribution 0.947 1.712 0.524 2.025 sum -13.520 -5.965 -8.526 17.061 Atomic orbital electron populations 1.69821 1.09022 1.30961 1.33745 1.26815 0.95568 1.04541 0.90776 0.85086 0.79335 0.75757 0.79108 1.18310 1.18439 1.19081 1.19876 0.98231 0.91752 1.41741 0.90008 1.18002 0.90738 0.93224 0.87479 1.22060 1.06066 0.93847 1.10633 1.22179 0.90660 0.97733 0.93484 1.67367 1.16032 1.27121 1.19009 1.18450 0.88169 0.90124 0.92176 1.43500 1.25226 1.12159 1.49436 1.21408 0.86971 0.83378 0.81099 1.90818 1.67053 1.30759 1.48404 1.21608 0.93388 0.96416 1.03860 1.22991 0.99638 0.99020 0.94109 0.89585 1.23619 0.98478 0.95526 1.04585 1.86874 1.86406 1.16216 1.15658 1.23573 0.99116 1.06729 0.93264 1.23548 0.99759 0.95054 1.04864 1.87406 1.85585 1.16209 1.16527 1.21516 1.03215 0.95848 1.08283 0.89645 0.86917 0.83634 0.74063 0.83491 0.86109 0.84216 0.87190 0.84738 0.87874 0.85553 0.89542 0.85821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.50 10.93 21.84 0.24 -39.26 16 2 C 0.04 1.92 5.20 85.29 0.44 2.37 16 3 Si 0.99 35.74 29.59 68.60 2.03 37.77 16 4 H -0.26 -9.33 7.11 99.48 0.71 -8.63 16 5 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 6 H -0.27 -9.27 7.11 99.48 0.71 -8.57 16 7 C -0.49 -25.30 9.12 23.52 0.21 -25.09 16 8 H 0.08 4.11 7.90 -2.91 -0.02 4.09 16 9 C 0.11 6.14 5.60 -21.11 -0.12 6.02 16 10 C -0.30 -15.31 9.90 22.84 0.23 -15.08 16 11 C 0.11 5.59 11.15 84.50 0.94 6.53 16 12 N -0.58 -29.86 7.85 -193.54 -1.52 -31.37 16 13 C 0.34 16.46 7.42 132.75 0.98 17.45 16 14 N -0.66 -24.73 5.39 -308.66 -1.66 -26.39 16 15 C 0.49 17.06 7.49 87.66 0.66 17.72 16 16 O -0.50 -22.16 13.02 -3.01 -0.04 -22.19 16 17 C -0.11 -2.35 5.16 29.85 0.15 -2.19 16 18 C -0.03 -0.58 2.03 30.47 0.06 -0.52 16 19 H 0.09 2.30 7.96 -2.39 -0.02 2.28 16 20 C -0.07 -1.10 5.53 71.86 0.40 -0.71 16 21 S -0.28 -4.97 22.05 -56.49 -1.25 -6.22 16 22 C -0.08 -1.14 6.25 71.86 0.45 -0.69 16 23 C -0.08 -1.61 6.26 71.86 0.45 -1.16 16 24 S -0.29 -7.73 19.80 -56.49 -1.12 -8.85 16 25 C -0.26 -13.55 8.62 22.99 0.20 -13.35 16 26 H 0.29 12.64 8.29 -92.71 -0.77 11.87 16 27 H 0.11 5.25 8.06 -2.91 -0.02 5.22 16 28 H 0.15 6.25 8.06 -2.91 -0.02 6.23 16 29 H 0.42 12.57 8.70 -92.71 -0.81 11.76 16 30 H 0.15 1.96 8.13 -2.39 -0.02 1.94 16 31 H 0.12 2.17 8.14 -2.38 -0.02 2.15 16 32 H 0.14 1.52 8.13 -2.39 -0.02 1.50 16 33 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.09 1.86 8.14 -2.40 -0.02 1.84 16 38 H 0.12 6.28 6.20 -2.91 -0.02 6.27 16 Total: -1.00 -71.12 339.96 2.02 -69.10 By element: Atomic # 1 Polarization: 35.85 SS G_CDS: 0.28 Total: 36.13 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: 5.06 Total: -8.71 kcal Atomic # 7 Polarization: -94.08 SS G_CDS: -2.94 Total: -97.03 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.04 Total: -22.19 kcal Atomic # 14 Polarization: 35.74 SS G_CDS: 2.03 Total: 37.77 kcal Atomic # 16 Polarization: -12.70 SS G_CDS: -2.36 Total: -15.06 kcal Total: -71.12 2.02 -69.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752126063.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.941 kcal (2) G-P(sol) polarization free energy of solvation -71.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds