Wall clock time and date at job start Tue Mar 31 2020 13:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86795 * 120.00605 * 2 1 4 4 H 1.48501 * 109.47466 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46961 * 300.00431 * 3 2 1 6 6 H 1.48506 * 109.46827 * 59.99621 * 3 2 1 7 7 C 1.40039 * 119.99733 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99806 * 194.57874 * 7 2 1 9 9 C 1.41544 * 119.99899 * 14.57542 * 7 2 1 10 10 C 1.41173 * 120.99414 * 200.77660 * 9 7 2 11 11 C 1.37598 * 119.01447 * 180.02562 * 10 9 7 12 12 N 1.32081 * 121.10662 * 359.97438 * 11 10 9 13 13 C 1.32476 * 122.23394 * 359.97438 * 12 11 10 14 14 N 1.39471 * 119.57849 * 179.97438 * 13 12 11 15 15 C 1.34776 * 120.00033 * 353.62656 * 14 13 12 16 16 O 1.21282 * 120.00126 * 4.66028 * 15 14 13 17 17 C 1.50697 * 119.99826 * 184.65148 * 15 14 13 18 18 C 1.53004 * 109.47153 * 180.02562 * 17 15 14 19 19 H 1.08997 * 109.38182 * 54.78201 * 18 17 15 20 20 C 1.52636 * 109.38650 * 174.47054 * 18 17 15 21 21 S 1.81171 * 109.99377 * 187.00833 * 20 18 17 22 22 C 1.81176 * 103.31199 * 297.38470 * 21 20 18 23 23 C 1.52635 * 109.99628 * 62.61376 * 22 21 20 24 24 S 1.81171 * 109.99295 * 293.14972 * 23 22 21 25 25 C 1.38592 * 120.83926 * 0.02562 * 13 12 11 26 26 H 0.96997 * 119.99342 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.49417 * 359.97438 * 10 9 7 28 28 H 1.07996 * 119.44396 * 180.02562 * 11 10 9 29 29 H 0.96998 * 119.99805 * 173.63297 * 14 13 12 30 30 H 1.08999 * 109.47414 * 300.00114 * 17 15 14 31 31 H 1.08993 * 109.46930 * 60.00462 * 17 15 14 32 32 H 1.08999 * 109.38284 * 307.16701 * 20 18 17 33 33 H 1.08999 * 109.38644 * 66.84271 * 20 18 17 34 34 H 1.09004 * 109.37953 * 302.45087 * 22 21 20 35 35 H 1.08997 * 109.29887 * 182.72544 * 22 21 20 36 36 H 1.08999 * 109.38641 * 172.98931 * 23 22 21 37 37 H 1.08993 * 109.38151 * 53.30973 * 23 22 21 38 38 H 1.07999 * 120.60150 * 179.72850 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2416 1.6176 0.0000 4 1 3.7016 1.3462 0.0006 5 1 1.8828 2.3964 -1.2125 6 1 1.8828 2.3963 1.2125 7 6 2.0076 -1.2128 -0.0005 8 1 3.0614 -1.2280 0.2349 9 6 1.3339 -2.4187 -0.3096 10 6 1.8585 -3.6672 0.0893 11 6 1.1701 -4.8141 -0.2333 12 7 0.0342 -4.7620 -0.9053 13 6 -0.5005 -3.6165 -1.3014 14 7 -1.7027 -3.6260 -2.0086 15 6 -2.2470 -4.7963 -2.3966 16 8 -1.7374 -5.8437 -2.0588 17 6 -3.4891 -4.8033 -3.2499 18 6 -3.8962 -6.2482 -3.5462 19 1 -4.0055 -6.7927 -2.6083 20 6 -5.2276 -6.2565 -4.2926 21 16 -5.8273 -7.9568 -4.4705 22 6 -4.5467 -8.7475 -5.4791 23 6 -3.2153 -8.7391 -4.7328 24 16 -2.6155 -7.0389 -4.5549 25 6 0.1200 -2.4089 -1.0231 26 1 -0.4849 0.8401 0.0004 27 1 2.7867 -3.7214 0.6387 28 1 1.5648 -5.7729 0.0687 29 1 -2.1469 -2.7903 -2.2211 30 1 -4.2973 -4.3000 -2.7194 31 1 -3.2894 -4.2825 -4.1863 32 1 -5.9587 -5.6715 -3.7347 33 1 -5.0915 -5.8157 -5.2801 34 1 -4.4387 -8.2040 -6.4178 35 1 -4.8376 -9.7768 -5.6886 36 1 -2.4841 -9.3241 -5.2907 37 1 -3.3514 -9.1799 -3.7453 38 1 -0.3171 -1.4776 -1.3517 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000752126065.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:14 Heat of formation + Delta-G solvation = 0.021673 kcal Electronic energy + Delta-G solvation = -22085.823466 eV Core-core repulsion = 18759.550798 eV Total energy + Delta-G solvation = -3326.272668 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.62157 -37.87497 -35.02204 -34.26071 -33.70788 -33.19859 -30.54087 -29.27283 -27.63372 -26.00909 -24.10596 -22.97435 -21.92543 -21.21011 -19.65985 -17.70041 -17.52205 -16.98269 -16.44951 -15.81230 -15.71702 -15.21430 -14.67355 -14.37964 -14.18492 -14.05156 -14.03098 -13.61823 -13.43685 -13.26486 -12.85291 -12.66756 -12.60325 -12.41198 -11.96678 -11.55725 -11.42380 -11.18033 -10.97001 -10.91283 -10.41335 -10.28170 -10.12490 -9.77527 -9.72540 -9.39188 -9.32765 -8.16208 -8.01315 -7.75239 -7.52107 -7.02035 -6.77185 -4.63157 1.29235 1.53462 2.08499 2.43116 2.57773 2.76852 3.00005 3.05525 3.20855 3.48013 3.59158 3.82779 4.33066 4.40749 4.57894 4.66787 4.70469 4.76065 4.99031 5.10417 5.19495 5.27032 5.31257 5.41568 5.50161 5.70003 5.73742 6.02901 6.59766 6.67172 6.81942 6.94427 7.14162 7.41206 7.48186 7.78584 7.95632 8.22296 8.43900 8.70649 8.74694 8.91801 9.71942 10.03840 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.028401 B = 0.002664 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.656922 B =10507.988168 C =11112.016099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.076 3.924 3 Si 0.913 3.087 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.450 4.450 8 H 0.082 0.918 9 C 0.139 3.861 10 C -0.286 4.286 11 C 0.119 3.881 12 N -0.552 5.552 13 C 0.337 3.663 14 N -0.660 5.660 15 C 0.491 3.509 16 O -0.457 6.457 17 C -0.124 4.124 18 C -0.043 4.043 19 H 0.108 0.892 20 C -0.083 4.083 21 S -0.256 6.256 22 C -0.087 4.087 23 C -0.099 4.099 24 S -0.210 6.210 25 C -0.247 4.247 26 H 0.280 0.720 27 H 0.101 0.899 28 H 0.123 0.877 29 H 0.406 0.594 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.096 0.904 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.145 -7.463 -10.144 16.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.143 4.143 3 Si 0.737 3.263 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.481 4.481 8 H 0.100 0.900 9 C 0.131 3.869 10 C -0.310 4.310 11 C -0.036 4.036 12 N -0.272 5.272 13 C 0.112 3.888 14 N -0.306 5.306 15 C 0.274 3.726 16 O -0.325 6.325 17 C -0.167 4.167 18 C -0.174 4.174 19 H 0.126 0.874 20 C -0.233 4.233 21 S -0.027 6.027 22 C -0.237 4.237 23 C -0.249 4.249 24 S 0.018 5.982 25 C -0.273 4.273 26 H 0.092 0.908 27 H 0.119 0.881 28 H 0.140 0.860 29 H 0.241 0.759 30 H 0.124 0.876 31 H 0.118 0.882 32 H 0.135 0.865 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.115 0.885 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.472 -8.954 -10.154 17.745 hybrid contribution 0.517 2.085 0.183 2.156 sum -10.954 -6.869 -9.972 16.328 Atomic orbital electron populations 1.69763 1.07675 1.29098 1.34954 1.25981 0.94821 1.01574 0.91913 0.86182 0.80985 0.80507 0.78626 1.18288 1.19622 1.19867 1.19643 0.97145 0.90462 1.40887 0.90010 1.17586 0.90371 0.92253 0.86729 1.21876 1.04034 0.93867 1.11241 1.21745 0.90660 0.96685 0.94479 1.67216 1.14102 1.26888 1.18954 1.18205 0.86315 0.90847 0.93399 1.43413 1.22823 1.08993 1.55374 1.20350 0.85711 0.84644 0.81884 1.90841 1.60230 1.30159 1.51306 1.21564 0.98142 0.95311 1.01660 1.23063 0.93955 0.98899 1.01510 0.87386 1.23661 0.99182 0.95803 1.04673 1.86777 1.34753 1.10914 1.70279 1.23579 0.95294 1.04421 1.00404 1.23562 0.98816 0.98035 1.04532 1.87158 1.35540 1.08602 1.66913 1.21732 1.00999 0.95850 1.08683 0.90845 0.88101 0.85997 0.75899 0.87558 0.88219 0.86540 0.88452 0.88657 0.86896 0.86789 0.88528 0.84684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.09 10.61 55.55 0.59 -18.50 16 2 C 0.08 1.81 5.27 -17.34 -0.09 1.71 16 3 Si 0.91 17.75 29.58 -169.99 -5.03 12.72 16 4 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 5 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 6 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.45 -11.54 9.14 -37.65 -0.34 -11.88 16 8 H 0.08 2.02 7.89 -52.49 -0.41 1.60 16 9 C 0.14 3.65 5.65 -106.55 -0.60 3.05 16 10 C -0.29 -7.07 9.90 -38.70 -0.38 -7.45 16 11 C 0.12 2.87 11.15 -17.68 -0.20 2.68 16 12 N -0.55 -14.08 7.86 -12.52 -0.10 -14.18 16 13 C 0.34 8.12 7.41 -154.70 -1.15 6.97 16 14 N -0.66 -12.60 5.39 -11.49 -0.06 -12.66 16 15 C 0.49 8.78 7.50 -10.99 -0.08 8.70 16 16 O -0.46 -10.01 13.04 5.56 0.07 -9.94 16 17 C -0.12 -1.46 5.16 -27.88 -0.14 -1.60 16 18 C -0.04 -0.51 2.02 -26.92 -0.05 -0.56 16 19 H 0.11 1.49 7.94 -51.92 -0.41 1.07 16 20 C -0.08 -0.75 5.53 36.97 0.20 -0.54 16 21 S -0.26 -2.53 22.05 -107.50 -2.37 -4.90 16 22 C -0.09 -0.72 6.25 36.97 0.23 -0.49 16 23 C -0.10 -1.00 6.25 36.97 0.23 -0.77 16 24 S -0.21 -2.84 19.85 -107.50 -2.13 -4.98 16 25 C -0.25 -6.24 8.65 -38.48 -0.33 -6.58 16 26 H 0.28 6.10 8.29 -40.82 -0.34 5.76 16 27 H 0.10 2.29 8.06 -52.49 -0.42 1.86 16 28 H 0.12 2.60 8.06 -52.49 -0.42 2.17 16 29 H 0.41 6.31 8.70 -40.82 -0.36 5.96 16 30 H 0.11 0.95 8.13 -51.93 -0.42 0.52 16 31 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.12 0.87 8.12 -51.92 -0.42 0.45 16 33 H 0.10 0.80 8.14 -51.92 -0.42 0.38 16 34 H 0.09 0.75 8.14 -51.91 -0.42 0.33 16 35 H 0.11 0.75 8.14 -51.92 -0.42 0.32 16 36 H 0.11 0.99 8.14 -51.92 -0.42 0.56 16 37 H 0.10 1.05 8.14 -51.92 -0.42 0.62 16 38 H 0.14 3.38 5.88 -52.49 -0.31 3.07 16 LS Contribution 339.51 15.07 5.12 5.12 Total: -1.00 -31.54 339.51 -11.48 -43.02 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -4.85 Total: 11.06 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -2.71 Total: -6.76 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: 0.43 Total: -45.33 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.07 Total: -9.94 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.03 Total: 12.72 kcal Atomic # 16 Polarization: -5.38 SS G_CDS: -4.50 Total: -9.88 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.54 -11.48 -43.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752126065.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.042 kcal (2) G-P(sol) polarization free energy of solvation -31.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds