Wall clock time and date at job start Tue Mar 31 2020 13:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86795 * 120.00605 * 2 1 4 4 H 1.48501 * 109.47466 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46961 * 300.00431 * 3 2 1 6 6 H 1.48506 * 109.46827 * 59.99621 * 3 2 1 7 7 C 1.40039 * 119.99733 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99806 * 194.57874 * 7 2 1 9 9 C 1.41544 * 119.99899 * 14.57542 * 7 2 1 10 10 C 1.41173 * 120.99414 * 200.77660 * 9 7 2 11 11 C 1.37598 * 119.01447 * 180.02562 * 10 9 7 12 12 N 1.32081 * 121.10662 * 359.97438 * 11 10 9 13 13 C 1.32476 * 122.23394 * 359.97438 * 12 11 10 14 14 N 1.39471 * 119.57849 * 179.97438 * 13 12 11 15 15 C 1.34776 * 120.00033 * 353.62656 * 14 13 12 16 16 O 1.21282 * 120.00126 * 4.66028 * 15 14 13 17 17 C 1.50697 * 119.99826 * 184.65148 * 15 14 13 18 18 C 1.53004 * 109.47153 * 180.02562 * 17 15 14 19 19 H 1.08997 * 109.38182 * 54.78201 * 18 17 15 20 20 C 1.52636 * 109.38650 * 174.47054 * 18 17 15 21 21 S 1.81171 * 109.99377 * 187.00833 * 20 18 17 22 22 C 1.81176 * 103.31199 * 297.38470 * 21 20 18 23 23 C 1.52635 * 109.99628 * 62.61376 * 22 21 20 24 24 S 1.81171 * 109.99295 * 293.14972 * 23 22 21 25 25 C 1.38592 * 120.83926 * 0.02562 * 13 12 11 26 26 H 0.96997 * 119.99342 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.49417 * 359.97438 * 10 9 7 28 28 H 1.07996 * 119.44396 * 180.02562 * 11 10 9 29 29 H 0.96998 * 119.99805 * 173.63297 * 14 13 12 30 30 H 1.08999 * 109.47414 * 300.00114 * 17 15 14 31 31 H 1.08993 * 109.46930 * 60.00462 * 17 15 14 32 32 H 1.08999 * 109.38284 * 307.16701 * 20 18 17 33 33 H 1.08999 * 109.38644 * 66.84271 * 20 18 17 34 34 H 1.09004 * 109.37953 * 302.45087 * 22 21 20 35 35 H 1.08997 * 109.29887 * 182.72544 * 22 21 20 36 36 H 1.08999 * 109.38641 * 172.98931 * 23 22 21 37 37 H 1.08993 * 109.38151 * 53.30973 * 23 22 21 38 38 H 1.07999 * 120.60150 * 179.72850 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2416 1.6176 0.0000 4 1 3.7016 1.3462 0.0006 5 1 1.8828 2.3964 -1.2125 6 1 1.8828 2.3963 1.2125 7 6 2.0076 -1.2128 -0.0005 8 1 3.0614 -1.2280 0.2349 9 6 1.3339 -2.4187 -0.3096 10 6 1.8585 -3.6672 0.0893 11 6 1.1701 -4.8141 -0.2333 12 7 0.0342 -4.7620 -0.9053 13 6 -0.5005 -3.6165 -1.3014 14 7 -1.7027 -3.6260 -2.0086 15 6 -2.2470 -4.7963 -2.3966 16 8 -1.7374 -5.8437 -2.0588 17 6 -3.4891 -4.8033 -3.2499 18 6 -3.8962 -6.2482 -3.5462 19 1 -4.0055 -6.7927 -2.6083 20 6 -5.2276 -6.2565 -4.2926 21 16 -5.8273 -7.9568 -4.4705 22 6 -4.5467 -8.7475 -5.4791 23 6 -3.2153 -8.7391 -4.7328 24 16 -2.6155 -7.0389 -4.5549 25 6 0.1200 -2.4089 -1.0231 26 1 -0.4849 0.8401 0.0004 27 1 2.7867 -3.7214 0.6387 28 1 1.5648 -5.7729 0.0687 29 1 -2.1469 -2.7903 -2.2211 30 1 -4.2973 -4.3000 -2.7194 31 1 -3.2894 -4.2825 -4.1863 32 1 -5.9587 -5.6715 -3.7347 33 1 -5.0915 -5.8157 -5.2801 34 1 -4.4387 -8.2040 -6.4178 35 1 -4.8376 -9.7768 -5.6886 36 1 -2.4841 -9.3241 -5.2907 37 1 -3.3514 -9.1799 -3.7453 38 1 -0.3171 -1.4776 -1.3517 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000752126065.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:13 Heat of formation + Delta-G solvation = -17.656721 kcal Electronic energy + Delta-G solvation = -22086.590059 eV Core-core repulsion = 18759.550798 eV Total energy + Delta-G solvation = -3327.039261 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.20090 -39.58544 -36.27551 -35.78069 -35.39183 -33.99341 -32.43120 -30.80760 -28.87594 -27.90821 -24.86858 -24.19114 -23.76877 -22.65532 -21.20955 -19.43988 -18.75391 -18.07290 -17.53787 -17.36407 -16.94198 -16.68634 -16.03179 -15.86016 -15.74125 -15.20950 -15.12218 -14.84669 -14.63316 -14.42594 -14.33514 -14.01112 -13.95093 -13.56625 -13.19397 -12.99421 -12.87553 -12.69296 -12.45701 -12.04386 -11.89075 -11.75945 -11.45618 -11.22438 -11.13586 -10.93403 -10.60720 -9.94183 -9.56749 -8.96002 -8.83385 -8.61604 -8.53353 -6.56767 0.54615 0.67753 0.78799 1.01115 1.33688 1.41381 1.54657 1.56737 1.57059 1.96395 2.19719 2.21519 2.82059 3.38367 3.60451 3.65064 3.77740 3.91530 4.00250 4.02375 4.25985 4.33318 4.36490 4.53545 4.57271 4.59687 4.73707 4.78082 4.82178 4.89790 4.95030 5.12472 5.26320 5.51122 5.68812 5.93754 6.17633 6.50493 6.66130 6.81460 6.84355 7.39970 7.88845 8.25973 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.028401 B = 0.002664 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.656922 B =10507.988168 C =11112.016099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.038 3.962 3 Si 0.989 3.011 4 H -0.260 1.260 5 H -0.261 1.261 6 H -0.265 1.265 7 C -0.481 4.481 8 H 0.081 0.919 9 C 0.109 3.891 10 C -0.303 4.303 11 C 0.112 3.888 12 N -0.576 5.576 13 C 0.335 3.665 14 N -0.655 5.655 15 C 0.485 3.515 16 O -0.501 6.501 17 C -0.110 4.110 18 C -0.027 4.027 19 H 0.084 0.916 20 C -0.072 4.072 21 S -0.282 6.282 22 C -0.076 4.076 23 C -0.083 4.083 24 S -0.282 6.282 25 C -0.266 4.266 26 H 0.293 0.707 27 H 0.112 0.888 28 H 0.146 0.854 29 H 0.422 0.578 30 H 0.145 0.855 31 H 0.123 0.877 32 H 0.139 0.861 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.135 0.865 36 H 0.127 0.873 37 H 0.085 0.915 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.576 -6.412 -11.222 18.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.179 4.179 3 Si 0.809 3.191 4 H -0.184 1.184 5 H -0.185 1.185 6 H -0.190 1.190 7 C -0.511 4.511 8 H 0.099 0.901 9 C 0.101 3.899 10 C -0.327 4.327 11 C -0.042 4.042 12 N -0.296 5.296 13 C 0.109 3.891 14 N -0.303 5.303 15 C 0.271 3.729 16 O -0.372 6.372 17 C -0.152 4.152 18 C -0.159 4.159 19 H 0.102 0.898 20 C -0.222 4.222 21 S -0.053 6.053 22 C -0.226 4.226 23 C -0.233 4.233 24 S -0.054 6.054 25 C -0.292 4.292 26 H 0.104 0.896 27 H 0.131 0.869 28 H 0.163 0.837 29 H 0.259 0.741 30 H 0.163 0.837 31 H 0.141 0.859 32 H 0.157 0.843 33 H 0.129 0.871 34 H 0.122 0.878 35 H 0.153 0.847 36 H 0.145 0.855 37 H 0.104 0.896 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.948 -7.905 -11.248 18.886 hybrid contribution 0.932 1.687 0.539 2.002 sum -12.016 -6.217 -10.709 17.255 Atomic orbital electron populations 1.69780 1.08917 1.30822 1.33919 1.26832 0.95675 1.04567 0.90846 0.85055 0.79254 0.75685 0.79119 1.18386 1.18503 1.18958 1.19911 0.97414 0.91493 1.42277 0.90070 1.18028 0.91288 0.93226 0.87369 1.22048 1.04799 0.93790 1.12039 1.22165 0.90458 0.97634 0.93909 1.67354 1.14791 1.27557 1.19922 1.18486 0.87581 0.90180 0.92867 1.43499 1.21465 1.10628 1.54707 1.21412 0.86776 0.83340 0.81330 1.90818 1.61864 1.31547 1.52929 1.21603 0.95850 0.96123 1.01668 1.22985 0.94507 0.98071 1.00286 0.89765 1.23616 0.97724 0.95554 1.05286 1.86898 1.35482 1.12079 1.70885 1.23572 0.93501 1.05646 0.99891 1.23545 1.00114 0.95142 1.04480 1.87326 1.38538 1.12142 1.67399 1.21732 1.01447 0.96204 1.09801 0.89624 0.86942 0.83695 0.74052 0.83695 0.85903 0.84334 0.87076 0.87782 0.84749 0.85466 0.89631 0.84899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.90 10.61 21.84 0.23 -38.67 16 2 C 0.04 1.79 5.27 85.29 0.45 2.24 16 3 Si 0.99 35.65 29.58 68.60 2.03 37.68 16 4 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 5 H -0.26 -8.91 7.11 99.48 0.71 -8.21 16 6 H -0.26 -9.15 7.11 99.48 0.71 -8.45 16 7 C -0.48 -25.03 9.14 23.52 0.22 -24.81 16 8 H 0.08 4.08 7.89 -2.91 -0.02 4.06 16 9 C 0.11 5.90 5.65 -21.11 -0.12 5.78 16 10 C -0.30 -15.37 9.90 22.84 0.23 -15.15 16 11 C 0.11 5.55 11.15 84.50 0.94 6.50 16 12 N -0.58 -30.02 7.86 -193.53 -1.52 -31.54 16 13 C 0.33 16.43 7.41 132.75 0.98 17.41 16 14 N -0.65 -24.85 5.39 -308.66 -1.66 -26.52 16 15 C 0.49 17.11 7.50 87.66 0.66 17.77 16 16 O -0.50 -22.27 13.04 -3.04 -0.04 -22.31 16 17 C -0.11 -2.35 5.16 29.85 0.15 -2.19 16 18 C -0.03 -0.60 2.02 30.47 0.06 -0.54 16 19 H 0.08 2.29 7.94 -2.40 -0.02 2.27 16 20 C -0.07 -1.10 5.53 71.86 0.40 -0.71 16 21 S -0.28 -5.03 22.05 -56.49 -1.25 -6.27 16 22 C -0.08 -1.11 6.25 71.86 0.45 -0.67 16 23 C -0.08 -1.59 6.25 71.86 0.45 -1.15 16 24 S -0.28 -7.50 19.85 -56.49 -1.12 -8.63 16 25 C -0.27 -13.76 8.65 22.98 0.20 -13.57 16 26 H 0.29 12.43 8.29 -92.71 -0.77 11.66 16 27 H 0.11 5.24 8.06 -2.91 -0.02 5.22 16 28 H 0.15 6.25 8.06 -2.91 -0.02 6.23 16 29 H 0.42 12.74 8.70 -92.71 -0.81 11.93 16 30 H 0.15 2.02 8.13 -2.39 -0.02 2.00 16 31 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.14 1.55 8.12 -2.40 -0.02 1.53 16 33 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.13 1.43 8.14 -2.40 -0.02 1.41 16 36 H 0.13 2.07 8.14 -2.40 -0.02 2.05 16 37 H 0.08 1.84 8.14 -2.40 -0.02 1.82 16 38 H 0.13 6.78 5.88 -2.91 -0.02 6.76 16 Total: -1.00 -70.79 339.51 2.02 -68.77 By element: Atomic # 1 Polarization: 36.28 SS G_CDS: 0.28 Total: 36.57 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: 5.07 Total: -9.08 kcal Atomic # 7 Polarization: -93.78 SS G_CDS: -2.95 Total: -96.73 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.04 Total: -22.31 kcal Atomic # 14 Polarization: 35.65 SS G_CDS: 2.03 Total: 37.68 kcal Atomic # 16 Polarization: -12.53 SS G_CDS: -2.37 Total: -14.90 kcal Total: -70.79 2.02 -68.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752126065.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.113 kcal (2) G-P(sol) polarization free energy of solvation -70.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds