Wall clock time and date at job start Tue Mar 31 2020 14:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39455 * 119.74378 * 320.09984 * 3 2 1 5 5 C 1.38488 * 119.05189 * 180.27694 * 4 3 2 6 6 C 1.50708 * 120.74347 * 179.72573 * 5 4 3 7 7 O 1.45200 * 109.47019 * 90.00386 * 6 5 4 8 8 C 1.34757 * 116.99885 * 179.97438 * 7 6 5 9 9 O 1.21508 * 119.99918 * 0.02562 * 8 7 6 10 10 C 1.47396 * 119.99991 * 179.97438 * 8 7 6 11 11 C 1.39726 * 120.20265 * 359.97438 * 10 8 7 12 12 C 1.37809 * 119.91465 * 179.97438 * 11 10 8 13 13 C 1.38590 * 120.32626 * 0.02562 * 12 11 10 14 14 C 1.38021 * 120.42074 * 359.97438 * 13 12 11 15 15 C 1.38838 * 120.07250 * 359.73757 * 14 13 12 16 16 O 1.35502 * 120.16568 * 180.28132 * 15 14 13 17 17 C 1.34821 * 117.00005 * 354.39550 * 16 15 14 18 18 H 1.07995 * 119.99529 * 5.05599 * 17 16 15 19 19 C 1.38695 * 119.99897 * 185.05070 * 17 16 15 20 20 N 1.31523 * 119.99985 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 120.00315 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.46946 * 89.99968 * 21 19 17 23 23 H 1.48498 * 109.47132 * 209.99733 * 21 19 17 24 24 H 1.48495 * 109.46747 * 329.99729 * 21 19 17 25 25 C 1.38701 * 118.50750 * 359.44556 * 5 4 3 26 26 C 1.38465 * 119.37750 * 0.59698 * 25 5 4 27 27 N 1.31590 * 120.91764 * 359.66585 * 26 25 5 28 28 H 1.08001 * 120.47114 * 0.02562 * 4 3 2 29 29 H 1.08998 * 109.46840 * 210.00536 * 6 5 4 30 30 H 1.09000 * 109.46769 * 330.00294 * 6 5 4 31 31 H 1.08001 * 120.04572 * 359.95913 * 11 10 8 32 32 H 1.07999 * 119.83563 * 179.97438 * 12 11 10 33 33 H 1.07999 * 119.78789 * 179.97438 * 13 12 11 34 34 H 1.07990 * 119.96233 * 180.02562 * 14 13 12 35 35 H 0.96997 * 120.00069 * 179.97438 * 20 19 17 36 36 H 1.07995 * 120.30651 * 180.30676 * 25 5 4 37 37 H 1.08005 * 119.53839 * 179.67766 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2603 -0.9280 0.7767 5 6 4.6450 -0.9108 0.7705 6 6 5.4315 -1.8928 1.6002 7 8 5.6903 -3.0887 0.8185 8 6 6.3887 -4.0726 1.4187 9 8 6.7705 -3.9350 2.5640 10 6 6.6885 -5.3160 0.6862 11 6 6.2501 -5.4793 -0.6304 12 6 6.5342 -6.6441 -1.3099 13 6 7.2528 -7.6563 -0.6936 14 6 7.6925 -7.5095 0.6065 15 6 7.4210 -6.3406 1.3049 16 8 7.8566 -6.1922 2.5794 17 6 8.4472 -7.2600 3.1526 18 1 8.6287 -8.1527 2.5726 19 6 8.8217 -7.2120 4.4872 20 7 9.3982 -8.2535 5.0464 21 14 8.5071 -5.6680 5.4906 22 1 7.1681 -5.7553 6.1267 23 1 9.5475 -5.5409 6.5426 24 1 8.5558 -4.4806 4.6002 25 6 5.2919 0.0267 -0.0211 26 6 4.5413 0.9198 -0.7670 27 7 3.2261 0.8859 -0.7392 28 1 2.7241 -1.6475 1.3776 29 1 6.3778 -1.4411 1.8976 30 1 4.8594 -2.1568 2.4897 31 1 5.6892 -4.6938 -1.1149 32 1 6.1944 -6.7692 -2.3274 33 1 7.4702 -8.5657 -1.2340 34 1 8.2522 -8.3027 1.0794 35 1 9.6605 -8.2198 5.9796 36 1 6.3708 0.0627 -0.0517 37 1 5.0423 1.6542 -1.3803 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754727358.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:53 Heat of formation + Delta-G solvation = -7.924382 kcal Electronic energy + Delta-G solvation = -25215.977810 eV Core-core repulsion = 21311.163752 eV Total energy + Delta-G solvation = -3904.814057 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.94333 -40.11533 -38.96762 -36.93727 -36.70798 -36.09236 -33.79139 -32.60617 -32.09279 -30.92597 -29.34643 -27.72818 -25.50140 -25.04854 -23.88222 -22.96298 -21.61709 -20.55249 -19.23881 -18.08862 -17.86416 -17.36821 -17.00113 -16.64436 -16.06673 -15.83429 -15.13262 -15.09039 -14.84123 -14.42452 -14.08941 -14.00286 -13.85334 -13.67873 -13.35123 -13.24208 -13.09458 -12.91203 -12.58102 -12.33762 -12.29091 -12.25225 -11.53438 -11.39129 -10.93685 -10.84363 -10.54673 -10.43995 -10.20303 -10.17966 -9.94838 -9.65178 -9.49345 -9.02653 -8.54412 -7.64331 -6.61008 -4.26580 0.10551 0.55623 1.33448 2.08718 2.15344 2.35603 2.95103 3.10818 3.12905 3.20794 3.26624 3.51047 3.51344 4.10681 4.15592 4.20751 4.33377 4.41131 4.50439 4.56911 4.69897 4.94858 5.00564 5.13425 5.19465 5.27156 5.37450 5.38709 5.59356 5.73041 5.83112 5.93207 5.98393 6.26092 6.44141 6.60809 6.74211 6.94855 6.97152 7.03729 7.24790 7.35657 7.55826 7.80110 8.30733 8.72948 9.32903 10.43678 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.014334 B = 0.003106 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.927614 B = 9013.627993 C =10122.692375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C 0.268 3.732 3 C 0.187 3.813 4 C -0.095 4.095 5 C -0.041 4.041 6 C 0.104 3.896 7 O -0.357 6.357 8 C 0.507 3.493 9 O -0.491 6.491 10 C -0.217 4.217 11 C -0.017 4.017 12 C -0.225 4.225 13 C -0.042 4.042 14 C -0.228 4.228 15 C 0.203 3.797 16 O -0.165 6.165 17 C -0.397 4.397 18 H 0.111 0.889 19 C 0.073 3.927 20 N -0.863 5.863 21 Si 0.901 3.099 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.240 1.240 25 C -0.119 4.119 26 C 0.108 3.892 27 N -0.448 5.448 28 H 0.150 0.850 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.126 0.874 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.141 0.859 35 H 0.284 0.716 36 H 0.150 0.850 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.911 13.303 -10.676 18.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.065 5.065 2 C -0.049 4.049 3 C 0.049 3.951 4 C -0.118 4.118 5 C -0.049 4.049 6 C 0.030 3.970 7 O -0.276 6.276 8 C 0.354 3.646 9 O -0.378 6.378 10 C -0.220 4.220 11 C -0.035 4.035 12 C -0.244 4.244 13 C -0.060 4.060 14 C -0.247 4.247 15 C 0.145 3.855 16 O -0.065 6.065 17 C -0.471 4.471 18 H 0.128 0.872 19 C -0.134 4.134 20 N -0.498 5.498 21 Si 0.725 3.275 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.163 1.163 25 C -0.140 4.140 26 C -0.051 4.051 27 N -0.159 5.159 28 H 0.168 0.832 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.144 0.856 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.159 0.841 35 H 0.094 0.906 36 H 0.168 0.832 37 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -7.910 14.051 -10.388 19.181 hybrid contribution 0.962 -0.201 1.074 1.456 sum -6.948 13.850 -9.314 18.079 Atomic orbital electron populations 1.81266 1.11497 1.06852 1.06912 1.24943 0.91636 0.94108 0.94215 1.16258 0.86155 0.95193 0.97465 1.22012 0.94216 0.97676 0.97878 1.19965 0.92997 0.95466 0.96450 1.21650 0.99969 0.82945 0.92448 1.86585 1.69501 1.25648 1.45876 1.21102 0.75288 0.82871 0.85357 1.90931 1.49496 1.79599 1.17792 1.17979 1.14107 0.93489 0.96416 1.20960 0.94377 0.96674 0.91538 1.20629 1.07633 0.95523 1.00610 1.21054 0.93623 0.97571 0.93776 1.21247 1.08186 0.99368 0.95871 1.18970 0.89575 0.91735 0.85172 1.83737 1.63107 1.38108 1.21568 1.20950 1.37616 0.92947 0.95634 0.87178 1.24523 0.94592 0.98475 0.95799 1.69629 1.36856 1.29246 1.14107 0.86198 0.78105 0.83662 0.79523 1.19786 1.20997 1.16311 1.22462 1.02649 0.94414 0.94462 1.22822 0.88017 0.97482 0.96808 1.67532 1.10832 1.20440 1.17064 0.83227 0.89432 0.89598 0.85588 0.86676 0.86558 0.84129 0.90603 0.83221 0.81028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -4.88 18.54 41.84 0.78 -4.11 16 2 C 0.27 2.87 15.53 -22.47 -0.35 2.53 16 3 C 0.19 1.74 6.58 -85.07 -0.56 1.18 16 4 C -0.10 -0.80 9.50 -39.04 -0.37 -1.17 16 5 C -0.04 -0.35 5.55 -104.35 -0.58 -0.93 16 6 C 0.10 1.14 5.64 36.01 0.20 1.35 16 7 O -0.36 -5.15 9.45 -40.65 -0.38 -5.54 16 8 C 0.51 9.54 7.89 34.46 0.27 9.81 16 9 O -0.49 -10.91 14.96 -26.59 -0.40 -11.31 16 10 C -0.22 -4.18 5.89 -104.83 -0.62 -4.80 16 11 C -0.02 -0.27 9.61 -39.18 -0.38 -0.65 16 12 C -0.23 -3.32 10.02 -39.61 -0.40 -3.71 16 13 C -0.04 -0.67 10.03 -39.53 -0.40 -1.06 16 14 C -0.23 -4.49 9.16 -39.44 -0.36 -4.85 16 15 C 0.20 4.50 6.66 -38.57 -0.26 4.24 16 16 O -0.17 -4.26 6.67 -21.03 -0.14 -4.40 16 17 C -0.40 -10.74 9.95 30.90 0.31 -10.43 16 18 H 0.11 2.97 5.44 -52.49 -0.29 2.68 16 19 C 0.07 1.98 5.49 -17.51 -0.10 1.89 16 20 N -0.86 -24.00 13.96 55.48 0.77 -23.23 16 21 Si 0.90 21.79 28.62 -169.99 -4.86 16.93 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.24 -6.03 7.11 56.52 0.40 -5.63 16 25 C -0.12 -0.80 9.82 -39.33 -0.39 -1.18 16 26 C 0.11 0.71 11.18 -17.57 -0.20 0.51 16 27 N -0.45 -4.10 10.28 -11.16 -0.11 -4.22 16 28 H 0.15 1.06 8.06 -52.49 -0.42 0.63 16 29 H 0.09 0.91 8.10 -51.93 -0.42 0.49 16 30 H 0.09 0.93 8.10 -51.93 -0.42 0.51 16 31 H 0.13 1.64 7.61 -52.49 -0.40 1.24 16 32 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.14 2.87 5.64 -52.49 -0.30 2.57 16 35 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.17 0.57 8.06 -52.48 -0.42 0.15 16 LS Contribution 345.78 15.07 5.21 5.21 Total: -1.00 -32.01 345.78 -6.37 -38.38 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -3.07 Total: -0.44 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -4.16 Total: -7.28 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 1.44 Total: -31.55 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.92 Total: -21.25 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.86 Total: 16.93 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.01 -6.37 -38.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754727358.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.460 kcal (2) G-P(sol) polarization free energy of solvation -32.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds