Wall clock time and date at job start Tue Mar 31 2020 14:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39455 * 119.74378 * 320.09984 * 3 2 1 5 5 C 1.38488 * 119.05189 * 180.27694 * 4 3 2 6 6 C 1.50708 * 120.74347 * 179.72573 * 5 4 3 7 7 O 1.45200 * 109.47019 * 90.00386 * 6 5 4 8 8 C 1.34757 * 116.99885 * 179.97438 * 7 6 5 9 9 O 1.21508 * 119.99918 * 0.02562 * 8 7 6 10 10 C 1.47396 * 119.99991 * 179.97438 * 8 7 6 11 11 C 1.39726 * 120.20265 * 359.97438 * 10 8 7 12 12 C 1.37809 * 119.91465 * 179.97438 * 11 10 8 13 13 C 1.38590 * 120.32626 * 0.02562 * 12 11 10 14 14 C 1.38021 * 120.42074 * 359.97438 * 13 12 11 15 15 C 1.38838 * 120.07250 * 359.73757 * 14 13 12 16 16 O 1.35502 * 120.16568 * 180.28132 * 15 14 13 17 17 C 1.34821 * 117.00005 * 354.39550 * 16 15 14 18 18 H 1.07995 * 119.99529 * 5.05599 * 17 16 15 19 19 C 1.38695 * 119.99897 * 185.05070 * 17 16 15 20 20 N 1.31523 * 119.99985 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 120.00315 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.46946 * 89.99968 * 21 19 17 23 23 H 1.48498 * 109.47132 * 209.99733 * 21 19 17 24 24 H 1.48495 * 109.46747 * 329.99729 * 21 19 17 25 25 C 1.38701 * 118.50750 * 359.44556 * 5 4 3 26 26 C 1.38465 * 119.37750 * 0.59698 * 25 5 4 27 27 N 1.31590 * 120.91764 * 359.66585 * 26 25 5 28 28 H 1.08001 * 120.47114 * 0.02562 * 4 3 2 29 29 H 1.08998 * 109.46840 * 210.00536 * 6 5 4 30 30 H 1.09000 * 109.46769 * 330.00294 * 6 5 4 31 31 H 1.08001 * 120.04572 * 359.95913 * 11 10 8 32 32 H 1.07999 * 119.83563 * 179.97438 * 12 11 10 33 33 H 1.07999 * 119.78789 * 179.97438 * 13 12 11 34 34 H 1.07990 * 119.96233 * 180.02562 * 14 13 12 35 35 H 0.96997 * 120.00069 * 179.97438 * 20 19 17 36 36 H 1.07995 * 120.30651 * 180.30676 * 25 5 4 37 37 H 1.08005 * 119.53839 * 179.67766 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2603 -0.9280 0.7767 5 6 4.6450 -0.9108 0.7705 6 6 5.4315 -1.8928 1.6002 7 8 5.6903 -3.0887 0.8185 8 6 6.3887 -4.0726 1.4187 9 8 6.7705 -3.9350 2.5640 10 6 6.6885 -5.3160 0.6862 11 6 6.2501 -5.4793 -0.6304 12 6 6.5342 -6.6441 -1.3099 13 6 7.2528 -7.6563 -0.6936 14 6 7.6925 -7.5095 0.6065 15 6 7.4210 -6.3406 1.3049 16 8 7.8566 -6.1922 2.5794 17 6 8.4472 -7.2600 3.1526 18 1 8.6287 -8.1527 2.5726 19 6 8.8217 -7.2120 4.4872 20 7 9.3982 -8.2535 5.0464 21 14 8.5071 -5.6680 5.4906 22 1 7.1681 -5.7553 6.1267 23 1 9.5475 -5.5409 6.5426 24 1 8.5558 -4.4806 4.6002 25 6 5.2919 0.0267 -0.0211 26 6 4.5413 0.9198 -0.7670 27 7 3.2261 0.8859 -0.7392 28 1 2.7241 -1.6475 1.3776 29 1 6.3778 -1.4411 1.8976 30 1 4.8594 -2.1568 2.4897 31 1 5.6892 -4.6938 -1.1149 32 1 6.1944 -6.7692 -2.3274 33 1 7.4702 -8.5657 -1.2340 34 1 8.2522 -8.3027 1.0794 35 1 9.6605 -8.2198 5.9796 36 1 6.3708 0.0627 -0.0517 37 1 5.0423 1.6542 -1.3803 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754727358.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:52 Heat of formation + Delta-G solvation = -26.358399 kcal Electronic energy + Delta-G solvation = -25216.777169 eV Core-core repulsion = 21311.163752 eV Total energy + Delta-G solvation = -3905.613416 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.80014 -41.37666 -40.44560 -38.25656 -37.82798 -37.39115 -34.59437 -34.53222 -32.71898 -32.34337 -30.84469 -28.63301 -27.32432 -25.76166 -25.11684 -23.78922 -23.11736 -21.95307 -20.03987 -19.88681 -19.35268 -18.45370 -18.10911 -17.61163 -17.11591 -16.95595 -16.54162 -16.00822 -15.86033 -15.79553 -15.64151 -15.45810 -15.29459 -14.48489 -14.41102 -14.31344 -14.19405 -14.09297 -14.02588 -13.94707 -13.41047 -13.15182 -12.95016 -12.84606 -12.59682 -12.39545 -12.01705 -11.71233 -11.69103 -11.28291 -10.97422 -10.91254 -10.80575 -10.25340 -9.96143 -9.21058 -8.58193 -6.28607 -0.54694 -0.10261 -0.08426 0.63195 1.28100 1.32434 1.34440 1.53996 1.57994 1.68392 1.89521 2.28426 2.36861 2.73561 2.81347 2.93272 3.10566 3.33194 3.57638 3.76328 3.87010 3.96425 4.03320 4.05897 4.23451 4.37327 4.42609 4.48443 4.58046 4.59999 4.71196 4.79959 5.07290 5.10855 5.25596 5.30119 5.44405 5.49487 5.60217 5.70100 5.82085 6.12242 6.17495 6.65029 6.76641 6.89547 7.51488 8.51694 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.014334 B = 0.003106 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.927614 B = 9013.627993 C =10122.692375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C 0.287 3.713 3 C 0.173 3.827 4 C -0.090 4.090 5 C -0.051 4.051 6 C 0.099 3.901 7 O -0.344 6.344 8 C 0.512 3.488 9 O -0.531 6.531 10 C -0.224 4.224 11 C -0.010 4.010 12 C -0.195 4.195 13 C -0.030 4.030 14 C -0.251 4.251 15 C 0.171 3.829 16 O -0.206 6.206 17 C -0.404 4.404 18 H 0.094 0.906 19 C 0.026 3.974 20 N -0.909 5.909 21 Si 0.955 3.045 22 H -0.275 1.275 23 H -0.267 1.267 24 H -0.258 1.258 25 C -0.102 4.102 26 C 0.115 3.885 27 N -0.465 5.465 28 H 0.157 0.843 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.164 0.836 32 H 0.166 0.834 33 H 0.154 0.846 34 H 0.121 0.879 35 H 0.287 0.713 36 H 0.175 0.825 37 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.675 15.153 -14.269 21.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.107 5.107 2 C -0.030 4.030 3 C 0.036 3.964 4 C -0.112 4.112 5 C -0.059 4.059 6 C 0.026 3.974 7 O -0.261 6.261 8 C 0.360 3.640 9 O -0.421 6.421 10 C -0.226 4.226 11 C -0.028 4.028 12 C -0.213 4.213 13 C -0.048 4.048 14 C -0.270 4.270 15 C 0.118 3.882 16 O -0.110 6.110 17 C -0.480 4.480 18 H 0.112 0.888 19 C -0.175 4.175 20 N -0.548 5.548 21 Si 0.778 3.222 22 H -0.201 1.201 23 H -0.192 1.192 24 H -0.182 1.182 25 C -0.123 4.123 26 C -0.044 4.044 27 N -0.176 5.176 28 H 0.175 0.825 29 H 0.113 0.887 30 H 0.102 0.898 31 H 0.181 0.819 32 H 0.183 0.817 33 H 0.172 0.828 34 H 0.138 0.862 35 H 0.096 0.904 36 H 0.193 0.807 37 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -8.716 15.917 -14.044 22.947 hybrid contribution 1.033 -0.628 1.677 2.068 sum -7.683 15.289 -12.366 21.112 Atomic orbital electron populations 1.81275 1.12675 1.08327 1.08465 1.25202 0.91924 0.92880 0.92971 1.16166 0.85346 0.96195 0.98688 1.22047 0.94296 0.97454 0.97433 1.19777 0.92747 0.95865 0.97481 1.21899 1.00812 0.81931 0.92756 1.86539 1.68018 1.25929 1.45621 1.21104 0.74787 0.83480 0.84666 1.90925 1.51079 1.80504 1.19609 1.18423 1.13221 0.93095 0.97896 1.21439 0.93452 0.98141 0.89746 1.21271 1.04123 0.93680 1.02231 1.21525 0.91884 0.99413 0.91984 1.21315 1.09415 0.98505 0.97800 1.19656 0.90380 0.93630 0.84574 1.83722 1.66186 1.37566 1.23522 1.20889 1.37972 0.93259 0.95861 0.88834 1.25097 0.95162 1.00539 0.96702 1.69682 1.39899 1.30646 1.14617 0.85417 0.78096 0.80370 0.78282 1.20051 1.19216 1.18238 1.22774 1.03958 0.92932 0.92620 1.23412 0.86999 0.97600 0.96419 1.67541 1.12248 1.20538 1.17318 0.82534 0.88724 0.89788 0.81884 0.81676 0.82801 0.86151 0.90357 0.80727 0.77504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -10.70 18.54 19.00 0.35 -10.34 16 2 C 0.29 5.89 15.53 88.33 1.37 7.27 16 3 C 0.17 2.87 6.58 40.54 0.27 3.14 16 4 C -0.09 -1.31 9.50 22.62 0.21 -1.09 16 5 C -0.05 -0.72 5.55 -19.69 -0.11 -0.83 16 6 C 0.10 1.98 5.64 71.24 0.40 2.38 16 7 O -0.34 -9.01 9.45 -56.68 -0.54 -9.55 16 8 C 0.51 18.73 7.89 70.23 0.55 19.29 16 9 O -0.53 -23.94 14.96 26.80 0.40 -23.54 16 10 C -0.22 -8.27 5.89 -20.00 -0.12 -8.39 16 11 C -0.01 -0.26 9.61 22.53 0.22 -0.05 16 12 C -0.19 -4.57 10.02 22.25 0.22 -4.35 16 13 C -0.03 -0.85 10.03 22.30 0.22 -0.62 16 14 C -0.25 -9.92 9.16 22.36 0.20 -9.72 16 15 C 0.17 7.69 6.66 22.92 0.15 7.84 16 16 O -0.21 -11.17 6.67 0.97 0.01 -11.16 16 17 C -0.40 -23.29 9.95 67.93 0.68 -22.62 16 18 H 0.09 5.47 5.44 -2.91 -0.02 5.45 16 19 C 0.03 1.49 5.49 84.85 0.47 1.95 16 20 N -0.91 -53.38 13.96 21.62 0.30 -53.08 16 21 Si 0.95 47.36 28.62 68.60 1.96 49.32 16 22 H -0.27 -13.46 7.11 99.48 0.71 -12.75 16 23 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 24 H -0.26 -13.40 7.11 99.48 0.71 -12.70 16 25 C -0.10 -0.95 9.82 22.43 0.22 -0.73 16 26 C 0.12 1.03 11.18 84.78 0.95 1.98 16 27 N -0.47 -7.22 10.28 -189.21 -1.94 -9.16 16 28 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 29 H 0.09 1.79 8.10 -2.39 -0.02 1.77 16 30 H 0.08 1.73 8.10 -2.39 -0.02 1.71 16 31 H 0.16 3.20 7.61 -2.91 -0.02 3.18 16 32 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 33 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 34 H 0.12 5.20 5.64 -2.92 -0.02 5.19 16 35 H 0.29 15.49 8.31 -92.71 -0.77 14.72 16 36 H 0.18 0.77 8.06 -2.91 -0.02 0.74 16 37 H 0.21 0.30 8.06 -2.91 -0.02 0.28 16 Total: -1.00 -76.02 345.78 7.60 -68.42 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: 1.14 Total: 3.63 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 5.91 Total: -4.53 kcal Atomic # 7 Polarization: -71.30 SS G_CDS: -1.29 Total: -72.59 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -0.13 Total: -44.25 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 1.96 Total: 49.32 kcal Total: -76.02 7.60 -68.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754727358.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.062 kcal (2) G-P(sol) polarization free energy of solvation -76.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds