Wall clock time and date at job start Tue Mar 31 2020 14:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99923 * 2 1 4 4 H 1.48502 * 109.47358 * 239.99845 * 3 2 1 5 5 H 1.48502 * 109.47516 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47217 * 119.99619 * 3 2 1 7 7 C 1.37879 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99703 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99992 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47188 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47242 * 180.02562 * 10 9 7 12 12 O 1.45196 * 109.47070 * 180.02562 * 11 10 9 13 13 C 1.34234 * 116.99938 * 179.97438 * 12 11 10 14 14 O 1.20822 * 119.99973 * 0.02562 * 13 12 11 15 15 C 1.50700 * 120.00068 * 179.97438 * 13 12 11 16 16 C 1.50697 * 109.47266 * 180.02562 * 15 13 12 17 17 C 1.37979 * 119.86907 * 264.99975 * 16 15 13 18 18 C 1.38342 * 120.33125 * 180.02562 * 17 16 15 19 19 Cl 1.73603 * 120.12286 * 180.22758 * 18 17 16 20 20 C 1.38485 * 119.74421 * 0.19963 * 18 17 16 21 21 C 1.37705 * 119.96869 * 359.93250 * 20 18 17 22 22 C 1.38914 * 120.79257 * 359.43666 * 21 20 18 23 23 O 1.36155 * 111.22173 * 180.88073 * 22 21 20 24 24 C 1.43776 * 109.29096 * 341.21186 * 23 22 21 25 25 C 1.51643 * 132.16374 * 179.45840 * 21 20 18 26 26 H 0.96998 * 119.99842 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46789 * 59.99988 * 9 7 2 28 28 H 1.08999 * 109.47285 * 299.99845 * 9 7 2 29 29 H 1.08998 * 109.46945 * 59.99672 * 10 9 7 30 30 H 1.08999 * 109.47046 * 300.00193 * 10 9 7 31 31 H 1.08996 * 109.47090 * 59.99784 * 11 10 9 32 32 H 1.08999 * 109.47084 * 299.99957 * 11 10 9 33 33 H 1.09004 * 109.46932 * 300.00373 * 15 13 12 34 34 H 1.08997 * 109.47392 * 59.99712 * 15 13 12 35 35 H 1.08000 * 119.83060 * 359.97438 * 17 16 15 36 36 H 1.08001 * 120.01509 * 179.91217 * 20 18 17 37 37 H 1.08998 * 110.74488 * 269.27431 * 24 23 22 38 38 H 1.09002 * 110.90853 * 145.99115 * 24 23 22 39 39 H 1.09003 * 110.93790 * 313.63001 * 25 21 20 40 40 H 1.09000 * 110.93986 * 77.27231 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 -0.0001 12 8 2.4238 -6.0907 0.0005 13 6 1.9108 -7.3311 0.0006 14 8 0.7130 -7.4894 -0.0003 15 6 2.8288 -8.5263 0.0006 16 6 2.0080 -9.7901 0.0001 17 6 1.7209 -10.4235 1.1918 18 6 0.9687 -11.5845 1.2024 19 17 0.6056 -12.3738 2.7054 20 6 0.5061 -12.1144 0.0094 21 6 0.7944 -11.4845 -1.1807 22 6 1.5377 -10.3112 -1.2024 23 8 1.6897 -9.8475 -2.4736 24 6 1.4282 -10.9133 -3.4024 25 6 0.4474 -11.8175 -2.6188 26 1 -0.4850 0.8400 0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6241 -2.5568 0.8903 29 1 2.8720 -3.6043 0.8905 30 1 2.8719 -3.6044 -0.8894 31 1 0.8539 -5.0446 -0.8903 32 1 0.8534 -5.0451 0.8896 33 1 3.4576 -8.5014 -0.8894 34 1 3.4577 -8.5014 0.8905 35 1 2.0858 -10.0112 2.1209 36 1 -0.0803 -13.0213 0.0125 37 1 2.3452 -11.4528 -3.6392 38 1 0.9606 -10.5322 -4.3103 39 1 0.6341 -12.8703 -2.8308 40 1 -0.5870 -11.5550 -2.8407 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755093823.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:23 Heat of formation + Delta-G solvation = -117.694486 kcal Electronic energy + Delta-G solvation = -23867.523583 eV Core-core repulsion = 20059.057030 eV Total energy + Delta-G solvation = -3808.466553 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.61969 -40.12003 -38.20616 -36.71179 -36.26240 -34.02104 -33.92172 -31.78704 -31.38659 -29.70103 -28.39443 -26.80982 -23.96286 -23.36430 -22.57236 -21.89425 -20.48644 -20.17965 -17.83403 -17.48382 -17.28204 -16.79210 -16.37857 -16.34491 -16.15454 -15.63522 -14.66107 -14.47717 -14.23783 -13.99232 -13.70285 -13.56312 -13.31574 -12.97584 -12.87724 -12.40205 -12.21650 -12.16096 -12.09994 -11.87014 -11.81362 -11.59981 -11.11173 -10.93669 -10.83461 -10.66935 -10.60743 -10.34129 -10.33599 -9.69187 -9.51095 -9.24807 -9.14984 -8.39450 -8.37104 -6.02017 -4.05125 0.75102 0.78938 1.80169 2.40501 2.77912 2.90485 3.29935 3.33429 3.37663 3.40498 3.92940 4.07578 4.28244 4.44668 4.52481 4.57350 4.70506 4.91843 4.93302 5.00788 5.08797 5.18228 5.29082 5.31530 5.33740 5.54071 5.61327 5.65808 5.67632 5.78482 5.88746 6.04364 6.05444 6.53836 6.56850 6.69598 6.88815 7.01379 7.61881 7.73315 7.96060 7.99274 8.37553 9.00987 9.58967 11.09447 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.019080 B = 0.002173 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.161381 B =12881.531407 C =13760.414135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.069 3.931 12 O -0.358 6.358 13 C 0.458 3.542 14 O -0.504 6.504 15 C -0.070 4.070 16 C -0.081 4.081 17 C -0.059 4.059 18 C -0.063 4.063 19 Cl -0.065 7.065 20 C -0.057 4.057 21 C -0.166 4.166 22 C 0.134 3.866 23 O -0.295 6.295 24 C 0.050 3.950 25 C -0.108 4.108 26 H 0.262 0.738 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.144 0.856 36 H 0.136 0.864 37 H 0.080 0.920 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.125 -30.322 -2.568 30.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.004 4.004 12 O -0.275 6.275 13 C 0.301 3.699 14 O -0.392 6.392 15 C -0.108 4.108 16 C -0.082 4.082 17 C -0.078 4.078 18 C -0.090 4.090 19 Cl -0.037 7.037 20 C -0.076 4.076 21 C -0.167 4.167 22 C 0.088 3.912 23 O -0.208 6.208 24 C -0.025 4.025 25 C -0.145 4.145 26 H 0.072 0.928 27 H 0.037 0.963 28 H 0.038 0.962 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.162 0.838 36 H 0.154 0.846 37 H 0.099 0.901 38 H 0.128 0.872 39 H 0.113 0.887 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.623 -30.046 -2.535 30.370 hybrid contribution 0.039 0.767 0.089 0.774 sum 3.662 -29.279 -2.446 29.608 Atomic orbital electron populations 1.69961 1.06092 1.26863 1.50494 1.25035 0.94884 0.99362 0.95213 0.86600 0.79521 0.82876 0.78665 1.20175 1.21274 1.20175 1.21140 0.93085 0.90695 1.51068 0.92470 1.19049 0.93850 0.90748 0.97668 1.21760 0.99913 0.91008 1.01945 1.23490 0.91208 0.83582 1.02114 1.86483 1.42666 1.15087 1.83255 1.23338 0.88575 0.84922 0.73110 1.90676 1.16874 1.86808 1.44838 1.20175 0.96668 0.86885 1.07058 1.18411 1.02364 0.97637 0.89807 1.20647 0.96413 0.93215 0.97482 1.20502 1.04389 0.96825 0.87273 1.98371 1.93786 1.79860 1.31642 1.20085 0.98669 0.99786 0.89026 1.20609 1.02467 0.98042 0.95558 1.19347 0.93549 0.92446 0.85874 1.86908 1.85967 1.35392 1.12533 1.23906 0.98885 0.86943 0.92745 1.21815 1.01258 1.01603 0.89803 0.92840 0.96260 0.96241 0.92141 0.92151 0.91577 0.91566 0.86422 0.86417 0.83850 0.84620 0.90147 0.87177 0.88683 0.88664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 10 C -0.11 -2.30 5.53 -26.73 -0.15 -2.45 16 11 C 0.07 1.32 5.47 37.16 0.20 1.52 16 12 O -0.36 -6.13 10.22 -39.27 -0.40 -6.53 16 13 C 0.46 7.17 7.95 36.01 0.29 7.46 16 14 O -0.50 -9.47 15.78 -18.75 -0.30 -9.76 16 15 C -0.07 -0.76 5.90 -29.04 -0.17 -0.94 16 16 C -0.08 -0.92 4.40 -104.35 -0.46 -1.38 16 17 C -0.06 -0.61 9.43 -39.64 -0.37 -0.98 16 18 C -0.06 -0.62 6.33 -39.45 -0.25 -0.87 16 19 Cl -0.07 -0.60 28.97 -51.86 -1.50 -2.10 16 20 C -0.06 -0.52 9.82 -39.69 -0.39 -0.91 16 21 C -0.17 -1.58 6.27 -104.10 -0.65 -2.24 16 22 C 0.13 1.54 6.75 -38.96 -0.26 1.28 16 23 O -0.29 -3.37 11.05 -20.23 -0.22 -3.59 16 24 C 0.05 0.34 8.01 38.06 0.30 0.64 16 25 C -0.11 -0.70 7.12 -26.52 -0.19 -0.88 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.07 1.29 8.13 -51.93 -0.42 0.86 16 32 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 33 H 0.12 1.11 8.12 -51.93 -0.42 0.69 16 34 H 0.12 0.93 8.05 -51.93 -0.42 0.51 16 35 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 36 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 362.41 15.07 5.46 5.46 Total: -1.00 -33.90 362.41 -9.35 -43.25 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: -5.45 Total: -4.18 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -2.65 Total: -12.88 kcal Atomic # 7 Polarization: -27.10 SS G_CDS: 0.74 Total: -26.36 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.92 Total: -19.88 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.50 Total: -2.10 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.90 -9.35 -43.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755093823.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.443 kcal (2) G-P(sol) polarization free energy of solvation -33.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds