Wall clock time and date at job start Tue Mar 31 2020 14:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99923 * 2 1 4 4 H 1.48502 * 109.47358 * 239.99845 * 3 2 1 5 5 H 1.48502 * 109.47516 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47217 * 119.99619 * 3 2 1 7 7 C 1.37879 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99703 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99992 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47188 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47242 * 180.02562 * 10 9 7 12 12 O 1.45196 * 109.47070 * 180.02562 * 11 10 9 13 13 C 1.34234 * 116.99938 * 179.97438 * 12 11 10 14 14 O 1.20822 * 119.99973 * 0.02562 * 13 12 11 15 15 C 1.50700 * 120.00068 * 179.97438 * 13 12 11 16 16 C 1.50697 * 109.47266 * 180.02562 * 15 13 12 17 17 C 1.37979 * 119.86907 * 264.99975 * 16 15 13 18 18 C 1.38342 * 120.33125 * 180.02562 * 17 16 15 19 19 Cl 1.73603 * 120.12286 * 180.22758 * 18 17 16 20 20 C 1.38485 * 119.74421 * 0.19963 * 18 17 16 21 21 C 1.37705 * 119.96869 * 359.93250 * 20 18 17 22 22 C 1.38914 * 120.79257 * 359.43666 * 21 20 18 23 23 O 1.36155 * 111.22173 * 180.88073 * 22 21 20 24 24 C 1.43776 * 109.29096 * 341.21186 * 23 22 21 25 25 C 1.51643 * 132.16374 * 179.45840 * 21 20 18 26 26 H 0.96998 * 119.99842 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46789 * 59.99988 * 9 7 2 28 28 H 1.08999 * 109.47285 * 299.99845 * 9 7 2 29 29 H 1.08998 * 109.46945 * 59.99672 * 10 9 7 30 30 H 1.08999 * 109.47046 * 300.00193 * 10 9 7 31 31 H 1.08996 * 109.47090 * 59.99784 * 11 10 9 32 32 H 1.08999 * 109.47084 * 299.99957 * 11 10 9 33 33 H 1.09004 * 109.46932 * 300.00373 * 15 13 12 34 34 H 1.08997 * 109.47392 * 59.99712 * 15 13 12 35 35 H 1.08000 * 119.83060 * 359.97438 * 17 16 15 36 36 H 1.08001 * 120.01509 * 179.91217 * 20 18 17 37 37 H 1.08998 * 110.74488 * 269.27431 * 24 23 22 38 38 H 1.09002 * 110.90853 * 145.99115 * 24 23 22 39 39 H 1.09003 * 110.93790 * 313.63001 * 25 21 20 40 40 H 1.09000 * 110.93986 * 77.27231 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 -0.0001 12 8 2.4238 -6.0907 0.0005 13 6 1.9108 -7.3311 0.0006 14 8 0.7130 -7.4894 -0.0003 15 6 2.8288 -8.5263 0.0006 16 6 2.0080 -9.7901 0.0001 17 6 1.7209 -10.4235 1.1918 18 6 0.9687 -11.5845 1.2024 19 17 0.6056 -12.3738 2.7054 20 6 0.5061 -12.1144 0.0094 21 6 0.7944 -11.4845 -1.1807 22 6 1.5377 -10.3112 -1.2024 23 8 1.6897 -9.8475 -2.4736 24 6 1.4282 -10.9133 -3.4024 25 6 0.4474 -11.8175 -2.6188 26 1 -0.4850 0.8400 0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6241 -2.5568 0.8903 29 1 2.8720 -3.6043 0.8905 30 1 2.8719 -3.6044 -0.8894 31 1 0.8539 -5.0446 -0.8903 32 1 0.8534 -5.0451 0.8896 33 1 3.4576 -8.5014 -0.8894 34 1 3.4577 -8.5014 0.8905 35 1 2.0858 -10.0112 2.1209 36 1 -0.0803 -13.0213 0.0125 37 1 2.3452 -11.4528 -3.6392 38 1 0.9606 -10.5322 -4.3103 39 1 0.6341 -12.8703 -2.8308 40 1 -0.5870 -11.5550 -2.8407 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755093823.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:23 Heat of formation + Delta-G solvation = -135.905462 kcal Electronic energy + Delta-G solvation = -23868.313270 eV Core-core repulsion = 20059.057030 eV Total energy + Delta-G solvation = -3809.256240 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.34701 -41.39279 -38.95421 -37.90166 -37.19542 -35.93699 -34.76158 -33.68823 -32.19921 -30.34192 -29.56094 -28.45243 -25.33935 -24.42827 -23.37119 -22.86070 -22.17438 -21.38254 -18.86122 -18.55686 -18.40518 -18.07083 -17.66739 -17.47819 -16.90532 -16.85618 -16.49391 -15.81860 -15.17748 -14.92313 -14.75289 -14.33341 -14.19308 -14.05337 -14.02136 -13.85817 -13.69505 -13.47051 -12.98714 -12.80114 -12.74701 -12.64180 -12.53429 -12.40993 -12.31004 -12.07068 -11.82694 -11.80869 -11.51339 -11.41908 -11.39548 -11.23872 -10.57204 -9.98123 -9.12511 -8.21977 -6.33903 -0.00166 0.05182 1.07534 1.16680 1.41332 1.44991 1.52720 1.67115 2.22993 2.40525 2.46196 3.11721 3.31569 3.38438 3.67418 3.79318 3.88783 3.98063 4.03249 4.05864 4.12978 4.22882 4.27586 4.39944 4.46012 4.56262 4.76999 4.78667 4.79997 4.86919 4.92002 4.95520 5.07036 5.08214 5.17866 5.34841 5.42523 5.52681 5.62632 5.79365 6.00101 6.18407 6.69729 6.82040 7.35656 8.90206 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.019080 B = 0.002173 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.161381 B =12881.531407 C =13760.414135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.026 3.974 10 C -0.093 4.093 11 C 0.079 3.921 12 O -0.356 6.356 13 C 0.457 3.543 14 O -0.539 6.539 15 C -0.061 4.061 16 C -0.101 4.101 17 C -0.067 4.067 18 C -0.073 4.073 19 Cl -0.061 7.061 20 C -0.058 4.058 21 C -0.172 4.172 22 C 0.112 3.888 23 O -0.323 6.323 24 C 0.042 3.958 25 C -0.103 4.103 26 H 0.265 0.735 27 H -0.005 1.005 28 H -0.004 1.004 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.133 0.867 34 H 0.151 0.849 35 H 0.156 0.844 36 H 0.157 0.843 37 H 0.099 0.901 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.651 -31.391 -2.864 32.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.085 0.915 9 C -0.011 4.011 10 C -0.131 4.131 11 C 0.005 3.995 12 O -0.273 6.273 13 C 0.301 3.699 14 O -0.429 6.429 15 C -0.098 4.098 16 C -0.103 4.103 17 C -0.085 4.085 18 C -0.100 4.100 19 Cl -0.033 7.033 20 C -0.076 4.076 21 C -0.173 4.173 22 C 0.066 3.934 23 O -0.237 6.237 24 C -0.032 4.032 25 C -0.140 4.140 26 H 0.073 0.927 27 H 0.013 0.987 28 H 0.014 0.986 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.151 0.849 34 H 0.169 0.831 35 H 0.173 0.827 36 H 0.175 0.825 37 H 0.117 0.883 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.171 -31.142 -2.836 31.695 hybrid contribution -0.487 0.992 0.161 1.117 sum 4.684 -30.150 -2.675 30.629 Atomic orbital electron populations 1.70103 1.07948 1.28025 1.51419 1.26040 0.95800 1.03617 0.94555 0.85421 0.78177 0.77634 0.79347 1.18972 1.20949 1.18957 1.21599 0.93784 0.91810 1.50966 0.91549 1.18935 0.94279 0.92588 0.95346 1.21454 0.98696 0.90252 1.02651 1.23098 0.91011 0.83863 1.01521 1.86477 1.41874 1.15411 1.83533 1.24358 0.88958 0.85077 0.71483 1.90662 1.18718 1.87010 1.46524 1.20314 0.95927 0.84219 1.09300 1.18571 1.03387 0.97984 0.90311 1.20843 0.96496 0.93448 0.97734 1.20667 1.04527 0.96968 0.87812 1.98369 1.93748 1.79714 1.31423 1.20370 0.98312 1.00340 0.88621 1.21001 1.01778 0.97396 0.97122 1.19666 0.94299 0.93321 0.86077 1.86860 1.86231 1.37525 1.13088 1.24232 1.00133 0.86372 0.92448 1.21911 1.01221 1.03192 0.87668 0.92666 0.98686 0.98562 0.91237 0.91448 0.92430 0.92061 0.84885 0.83146 0.82652 0.82508 0.88255 0.85763 0.85856 0.88451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.58 13.29 21.45 0.28 -57.30 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 3 Si 0.97 44.28 29.54 68.60 2.03 46.30 16 4 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.54 -31.10 9.11 25.60 0.23 -30.87 16 8 H 0.07 3.59 7.74 -2.91 -0.02 3.56 16 9 C 0.03 1.38 4.97 29.85 0.15 1.53 16 10 C -0.09 -3.94 5.53 30.59 0.17 -3.77 16 11 C 0.08 3.05 5.47 71.98 0.39 3.44 16 12 O -0.36 -11.98 10.22 -51.46 -0.53 -12.51 16 13 C 0.46 14.11 7.95 71.24 0.57 14.68 16 14 O -0.54 -20.53 15.78 21.98 0.35 -20.19 16 15 C -0.06 -1.24 5.90 29.10 0.17 -1.07 16 16 C -0.10 -2.22 4.40 -19.69 -0.09 -2.31 16 17 C -0.07 -1.31 9.43 22.23 0.21 -1.10 16 18 C -0.07 -1.37 6.33 22.35 0.14 -1.23 16 19 Cl -0.06 -1.05 28.97 -2.72 -0.08 -1.13 16 20 C -0.06 -0.97 9.82 22.20 0.22 -0.75 16 21 C -0.17 -3.07 6.27 -19.53 -0.12 -3.19 16 22 C 0.11 2.51 6.75 22.67 0.15 2.66 16 23 O -0.32 -7.19 11.05 -95.32 -1.05 -8.24 16 24 C 0.04 0.50 8.01 72.56 0.58 1.08 16 25 C -0.10 -1.13 7.12 30.73 0.22 -0.91 16 26 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 27 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 28 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 29 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 30 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 31 H 0.06 2.31 8.13 -2.39 -0.02 2.29 16 32 H 0.06 2.41 8.13 -2.39 -0.02 2.40 16 33 H 0.13 2.31 8.12 -2.38 -0.02 2.29 16 34 H 0.15 2.02 8.05 -2.39 -0.02 2.00 16 35 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 36 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 37 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -74.01 362.41 5.51 -68.51 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: 1.05 Total: 6.03 kcal Atomic # 6 Polarization: -24.93 SS G_CDS: 3.46 Total: -21.47 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: 0.28 Total: -57.30 kcal Atomic # 8 Polarization: -39.70 SS G_CDS: -1.23 Total: -40.94 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -0.08 Total: -1.13 kcal Total: -74.01 5.51 -68.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755093823.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.398 kcal (2) G-P(sol) polarization free energy of solvation -74.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds