Wall clock time and date at job start Tue Mar 31 2020 13:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35638 * 117.00396 * 2 1 4 4 C 1.38707 * 120.14983 * 359.72517 * 3 2 1 5 5 C 1.38059 * 120.08877 * 179.76259 * 4 3 2 6 6 N 1.48014 * 119.79963 * 180.23354 * 5 4 3 7 7 O 1.21804 * 119.99888 * 180.28019 * 6 5 4 8 8 O 1.21801 * 120.00119 * 0.27963 * 6 5 4 9 9 C 1.38563 * 120.39682 * 0.51495 * 5 4 3 10 10 C 1.37758 * 120.31281 * 359.74544 * 9 5 4 11 11 C 1.39774 * 119.90332 * 359.97438 * 10 9 5 12 12 C 1.47398 * 120.19678 * 179.97438 * 11 10 9 13 13 O 1.21510 * 119.99337 * 180.02562 * 12 11 10 14 14 O 1.34749 * 120.00205 * 0.02562 * 12 11 10 15 15 C 1.45202 * 116.99864 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.47093 * 180.02562 * 15 14 12 17 17 O 1.21297 * 120.00040 * 0.02562 * 16 15 14 18 18 N 1.34775 * 120.00275 * 179.97438 * 16 15 14 19 19 C 1.37096 * 120.00356 * 180.02562 * 18 16 15 20 20 H 1.07996 * 119.99808 * 359.97438 * 19 18 16 21 21 C 1.38951 * 120.00204 * 180.02562 * 19 18 16 22 22 N 1.31407 * 119.99830 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 120.00095 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47292 * 59.99861 * 23 21 19 25 25 H 1.48501 * 109.47419 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47188 * 299.99897 * 23 21 19 27 27 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46938 * 59.99691 * 1 2 3 29 29 H 1.09004 * 109.46926 * 299.99812 * 1 2 3 30 30 H 1.07996 * 119.96036 * 0.02562 * 4 3 2 31 31 H 1.08006 * 119.84343 * 179.71487 * 9 5 4 32 32 H 1.08005 * 120.04902 * 179.97438 * 10 9 5 33 33 H 1.09003 * 109.47008 * 300.00251 * 15 14 12 34 34 H 1.09000 * 109.46935 * 60.00414 * 15 14 12 35 35 H 0.97005 * 119.99585 * 359.97438 * 18 16 15 36 36 H 0.96999 * 120.00357 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2085 0.0000 4 6 1.2926 2.3738 -0.0058 5 6 1.9207 3.6032 -0.0008 6 7 1.1116 4.8427 -0.0017 7 8 1.6620 5.9292 -0.0025 8 8 -0.1046 4.7760 -0.0017 9 6 3.3040 3.6838 -0.0008 10 6 4.0673 2.5370 -0.0005 11 6 3.4447 1.2856 0.0004 12 6 4.2550 0.0543 0.0002 13 8 3.7100 -1.0316 0.0005 14 8 5.6002 0.1331 -0.0003 15 6 6.3339 -1.1200 0.0000 16 6 7.8138 -0.8355 0.0000 17 8 8.2112 0.3105 0.0001 18 7 8.6959 -1.8545 0.0008 19 6 10.0422 -1.5958 0.0013 20 1 10.3960 -0.5755 0.0006 21 6 10.9516 -2.6464 0.0017 22 7 10.5211 -3.8880 0.0020 23 14 12.7860 -2.2939 0.0016 24 1 13.1400 -1.5126 1.2139 25 1 13.5364 -3.5754 0.0026 26 1 13.1400 -1.5134 -1.2111 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 0.2140 2.3194 -0.0098 31 1 3.7861 4.6503 -0.0016 32 1 5.1452 2.6047 -0.0009 33 1 6.0743 -1.6927 0.8904 34 1 6.0738 -1.6935 -0.8896 35 1 8.3781 -2.7711 0.0019 36 1 11.1559 -4.6214 0.0026 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755675207.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:44 Heat of formation + Delta-G solvation = -122.747612 kcal Electronic energy + Delta-G solvation = -26100.713970 eV Core-core repulsion = 21747.778789 eV Total energy + Delta-G solvation = -4352.935181 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.093 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.60592 -41.20938 -39.94031 -38.25016 -38.06008 -36.94221 -36.19543 -34.07106 -32.86746 -31.44567 -31.11290 -28.76209 -28.22630 -27.13341 -24.76548 -23.68517 -23.07402 -21.43313 -20.11749 -19.66661 -19.11910 -18.33083 -18.14349 -17.93176 -17.39274 -17.02539 -16.67926 -16.30790 -16.16469 -15.79384 -15.13319 -14.67157 -14.43080 -14.22590 -14.06643 -13.79260 -13.43275 -13.03368 -12.55871 -12.39632 -12.29735 -12.07899 -11.92891 -11.89679 -11.67021 -11.56294 -11.49858 -11.15927 -10.64789 -10.54351 -10.53343 -10.34393 -10.13818 -9.65395 -9.17322 -8.60844 -8.14675 -6.55508 -3.97908 -0.85234 0.46757 0.69853 0.90678 2.12016 2.36231 2.49470 2.98446 3.11315 3.19552 3.23628 3.66505 3.82481 3.94972 4.03266 4.08915 4.24989 4.45463 4.59587 4.64334 4.78542 4.92556 5.02599 5.09113 5.10038 5.22588 5.34952 5.45253 5.60082 5.67583 5.94203 5.95940 6.38012 6.54190 7.23692 7.42258 7.63005 7.87811 8.41437 9.00897 9.32489 9.81700 10.61471 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.022907 B = 0.002380 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.028430 B =11764.106261 C =12965.687076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.270 6.270 3 C 0.192 3.808 4 C -0.167 4.167 5 C 0.024 3.976 6 N 0.023 4.977 7 O -0.144 6.144 8 O -0.157 6.157 9 C -0.107 4.107 10 C -0.015 4.015 11 C -0.105 4.105 12 C 0.501 3.499 13 O -0.479 6.479 14 O -0.321 6.321 15 C 0.063 3.937 16 C 0.437 3.563 17 O -0.577 6.577 18 N -0.550 5.550 19 C -0.304 4.304 20 H 0.106 0.894 21 C 0.026 3.974 22 N -0.896 5.896 23 Si 0.935 3.065 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.272 1.272 27 H 0.113 0.887 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.166 0.834 31 H 0.166 0.834 32 H 0.178 0.822 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.395 0.605 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.781 8.332 -0.009 21.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.180 6.180 3 C 0.143 3.857 4 C -0.187 4.187 5 C -0.059 4.059 6 N 0.545 4.455 7 O -0.363 6.363 8 O -0.372 6.372 9 C -0.126 4.126 10 C -0.034 4.034 11 C -0.107 4.107 12 C 0.343 3.657 13 O -0.367 6.367 14 O -0.235 6.235 15 C -0.014 4.014 16 C 0.222 3.778 17 O -0.462 6.462 18 N -0.187 5.187 19 C -0.433 4.433 20 H 0.124 0.876 21 C -0.177 4.177 22 N -0.536 5.536 23 Si 0.762 3.238 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.197 1.197 27 H 0.131 0.869 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.184 0.816 31 H 0.183 0.817 32 H 0.195 0.805 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.229 0.771 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.077 7.718 -0.009 20.579 hybrid contribution 0.136 -0.248 0.001 0.283 sum -18.942 7.470 -0.008 20.362 Atomic orbital electron populations 1.23373 0.77344 1.05461 1.01904 1.86445 1.21938 1.23609 1.86028 1.18653 0.90275 0.84883 0.91876 1.20914 1.02525 0.89320 1.05925 1.21058 0.91663 0.84142 1.08993 1.43616 1.01405 1.02650 0.97843 1.94573 1.74494 1.14765 1.52438 1.94545 0.95646 1.93935 1.53124 1.21005 0.90053 1.01774 0.99766 1.21626 1.02485 0.88479 0.90803 1.18979 0.89653 0.93351 1.08709 1.20567 0.82013 0.88508 0.74584 1.90909 1.72981 1.28849 1.43961 1.86560 1.17439 1.36358 1.83189 1.22818 0.91774 0.83044 1.03798 1.19256 0.85687 0.86623 0.86259 1.90558 1.79361 1.20738 1.55497 1.41694 1.06016 1.07463 1.63548 1.19676 0.80008 0.95161 1.48465 0.87605 1.25323 1.01045 0.94571 0.96748 1.69600 1.36250 0.98472 1.49322 0.85849 0.81192 0.77574 0.79234 1.19713 1.20843 1.19709 0.86917 0.91857 0.91847 0.81633 0.81686 0.80465 0.89264 0.89259 0.77115 0.91499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.81 101.05 0.99 1.07 16 2 O -0.27 -2.88 8.57 -40.50 -0.35 -3.23 16 3 C 0.19 2.01 6.70 -38.68 -0.26 1.75 16 4 C -0.17 -1.46 8.53 -39.47 -0.34 -1.80 16 5 C 0.02 0.23 6.85 -79.89 -0.55 -0.32 16 6 N 0.02 0.26 4.45 33.99 0.15 0.41 16 7 O -0.14 -1.69 18.43 -29.46 -0.54 -2.23 16 8 O -0.16 -1.79 18.43 -29.46 -0.54 -2.34 16 9 C -0.11 -0.94 9.53 -39.64 -0.38 -1.32 16 10 C -0.02 -0.15 9.61 -39.18 -0.38 -0.53 16 11 C -0.10 -1.24 5.88 -104.86 -0.62 -1.86 16 12 C 0.50 7.53 7.89 34.46 0.27 7.80 16 13 O -0.48 -8.04 14.95 -26.60 -0.40 -8.44 16 14 O -0.32 -5.46 9.01 -47.31 -0.43 -5.88 16 15 C 0.06 1.12 5.95 36.00 0.21 1.34 16 16 C 0.44 10.01 7.86 -10.99 -0.09 9.93 16 17 O -0.58 -15.19 16.08 -14.12 -0.23 -15.42 16 18 N -0.55 -13.41 5.29 -10.96 -0.06 -13.47 16 19 C -0.30 -8.14 9.68 -14.93 -0.14 -8.29 16 20 H 0.11 2.95 7.16 -52.49 -0.38 2.57 16 21 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 22 N -0.90 -23.50 13.05 55.50 0.72 -22.77 16 23 Si 0.94 20.23 29.55 -169.99 -5.02 15.21 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 26 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 27 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.28 7.65 -51.93 -0.40 -0.12 16 29 H 0.06 0.28 7.67 -51.93 -0.40 -0.12 16 30 H 0.17 1.10 5.83 -52.49 -0.31 0.80 16 31 H 0.17 1.16 7.59 -52.48 -0.40 0.76 16 32 H 0.18 1.69 7.61 -52.48 -0.40 1.29 16 33 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.40 9.13 7.90 -40.82 -0.32 8.81 16 36 H 0.28 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 337.07 15.07 5.08 5.08 Total: -1.00 -32.62 337.07 -5.97 -38.60 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -3.00 Total: 6.13 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: -1.36 Total: 8.36 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 0.82 Total: -35.83 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -2.48 Total: -37.54 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.62 -5.97 -38.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755675207.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.149 kcal (2) G-P(sol) polarization free energy of solvation -32.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds