Wall clock time and date at job start Tue Mar 31 2020 13:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35638 * 117.00396 * 2 1 4 4 C 1.38707 * 120.14983 * 359.72517 * 3 2 1 5 5 C 1.38059 * 120.08877 * 179.76259 * 4 3 2 6 6 N 1.48014 * 119.79963 * 180.23354 * 5 4 3 7 7 O 1.21804 * 119.99888 * 180.28019 * 6 5 4 8 8 O 1.21801 * 120.00119 * 0.27963 * 6 5 4 9 9 C 1.38563 * 120.39682 * 0.51495 * 5 4 3 10 10 C 1.37758 * 120.31281 * 359.74544 * 9 5 4 11 11 C 1.39774 * 119.90332 * 359.97438 * 10 9 5 12 12 C 1.47398 * 120.19678 * 179.97438 * 11 10 9 13 13 O 1.21510 * 119.99337 * 180.02562 * 12 11 10 14 14 O 1.34749 * 120.00205 * 0.02562 * 12 11 10 15 15 C 1.45202 * 116.99864 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.47093 * 180.02562 * 15 14 12 17 17 O 1.21297 * 120.00040 * 0.02562 * 16 15 14 18 18 N 1.34775 * 120.00275 * 179.97438 * 16 15 14 19 19 C 1.37096 * 120.00356 * 180.02562 * 18 16 15 20 20 H 1.07996 * 119.99808 * 359.97438 * 19 18 16 21 21 C 1.38951 * 120.00204 * 180.02562 * 19 18 16 22 22 N 1.31407 * 119.99830 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 120.00095 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47292 * 59.99861 * 23 21 19 25 25 H 1.48501 * 109.47419 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47188 * 299.99897 * 23 21 19 27 27 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46938 * 59.99691 * 1 2 3 29 29 H 1.09004 * 109.46926 * 299.99812 * 1 2 3 30 30 H 1.07996 * 119.96036 * 0.02562 * 4 3 2 31 31 H 1.08006 * 119.84343 * 179.71487 * 9 5 4 32 32 H 1.08005 * 120.04902 * 179.97438 * 10 9 5 33 33 H 1.09003 * 109.47008 * 300.00251 * 15 14 12 34 34 H 1.09000 * 109.46935 * 60.00414 * 15 14 12 35 35 H 0.97005 * 119.99585 * 359.97438 * 18 16 15 36 36 H 0.96999 * 120.00357 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2085 0.0000 4 6 1.2926 2.3738 -0.0058 5 6 1.9207 3.6032 -0.0008 6 7 1.1116 4.8427 -0.0017 7 8 1.6620 5.9292 -0.0025 8 8 -0.1046 4.7760 -0.0017 9 6 3.3040 3.6838 -0.0008 10 6 4.0673 2.5370 -0.0005 11 6 3.4447 1.2856 0.0004 12 6 4.2550 0.0543 0.0002 13 8 3.7100 -1.0316 0.0005 14 8 5.6002 0.1331 -0.0003 15 6 6.3339 -1.1200 0.0000 16 6 7.8138 -0.8355 0.0000 17 8 8.2112 0.3105 0.0001 18 7 8.6959 -1.8545 0.0008 19 6 10.0422 -1.5958 0.0013 20 1 10.3960 -0.5755 0.0006 21 6 10.9516 -2.6464 0.0017 22 7 10.5211 -3.8880 0.0020 23 14 12.7860 -2.2939 0.0016 24 1 13.1400 -1.5126 1.2139 25 1 13.5364 -3.5754 0.0026 26 1 13.1400 -1.5134 -1.2111 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 0.2140 2.3194 -0.0098 31 1 3.7861 4.6503 -0.0016 32 1 5.1452 2.6047 -0.0009 33 1 6.0743 -1.6927 0.8904 34 1 6.0738 -1.6935 -0.8896 35 1 8.3781 -2.7711 0.0019 36 1 11.1559 -4.6214 0.0026 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755675207.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:43 Heat of formation + Delta-G solvation = -142.181336 kcal Electronic energy + Delta-G solvation = -26101.556680 eV Core-core repulsion = 21747.778789 eV Total energy + Delta-G solvation = -4353.777890 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.093 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.44381 -42.15624 -41.05976 -39.95715 -38.88252 -37.80402 -37.52889 -36.02994 -33.73673 -33.39926 -31.84717 -30.22988 -28.84181 -28.07726 -26.56106 -24.67134 -23.81967 -22.49006 -21.44389 -20.89482 -20.08717 -19.96396 -19.43767 -18.76624 -18.26924 -18.08941 -17.85026 -17.51277 -17.13612 -16.97331 -16.61957 -15.97862 -15.73541 -15.69879 -15.19433 -14.81593 -14.39000 -14.32978 -13.83692 -13.70870 -13.54745 -13.21825 -12.93229 -12.88100 -12.74371 -12.48495 -12.46140 -12.40879 -12.38100 -12.13253 -11.91632 -11.81673 -11.56604 -10.95812 -10.51814 -10.11918 -9.90175 -8.52309 -6.02814 -1.70318 -0.26308 -0.18992 0.08659 1.11285 1.14382 1.37882 1.44217 1.55062 1.85545 1.87055 2.09664 2.28580 2.91114 3.10554 3.13554 3.25928 3.34766 3.40028 3.74058 3.90804 4.08221 4.14481 4.21291 4.21815 4.28597 4.34660 4.46245 4.62556 4.69925 4.89480 5.11210 5.13145 5.37156 5.88400 5.89210 6.34942 6.40322 6.51313 7.02753 7.39861 7.92659 8.64391 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.022907 B = 0.002380 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.028430 B =11764.106261 C =12965.687076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 O -0.295 6.295 3 C 0.196 3.804 4 C -0.153 4.153 5 C 0.022 3.978 6 N 0.024 4.976 7 O -0.160 6.160 8 O -0.156 6.156 9 C -0.099 4.099 10 C -0.009 4.009 11 C -0.125 4.125 12 C 0.504 3.496 13 O -0.500 6.500 14 O -0.334 6.334 15 C 0.073 3.927 16 C 0.438 3.562 17 O -0.615 6.615 18 N -0.558 5.558 19 C -0.337 4.337 20 H 0.086 0.914 21 C -0.009 4.009 22 N -0.916 5.916 23 Si 0.997 3.003 24 H -0.270 1.270 25 H -0.271 1.271 26 H -0.270 1.270 27 H 0.124 0.876 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.190 0.810 31 H 0.183 0.817 32 H 0.178 0.822 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.400 0.600 36 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.816 8.554 -0.011 22.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.206 6.206 3 C 0.146 3.854 4 C -0.172 4.172 5 C -0.060 4.060 6 N 0.544 4.456 7 O -0.376 6.376 8 O -0.374 6.374 9 C -0.118 4.118 10 C -0.028 4.028 11 C -0.127 4.127 12 C 0.348 3.652 13 O -0.389 6.389 14 O -0.249 6.249 15 C -0.004 4.004 16 C 0.224 3.776 17 O -0.501 6.501 18 N -0.195 5.195 19 C -0.466 4.466 20 H 0.104 0.896 21 C -0.210 4.210 22 N -0.555 5.555 23 Si 0.820 3.180 24 H -0.195 1.195 25 H -0.196 1.196 26 H -0.195 1.195 27 H 0.142 0.858 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.207 0.793 31 H 0.201 0.799 32 H 0.195 0.805 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.234 0.766 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.129 7.942 -0.012 21.640 hybrid contribution 0.306 -0.313 0.002 0.438 sum -19.824 7.629 -0.010 21.241 Atomic orbital electron populations 1.23719 0.74979 1.06905 1.03527 1.86419 1.24495 1.23873 1.85822 1.18630 0.89763 0.85462 0.91556 1.21053 1.03521 0.88237 1.04390 1.21165 0.91857 0.83836 1.09179 1.43758 1.01417 1.02893 0.97542 1.94579 1.74492 1.15285 1.53215 1.94536 0.95944 1.94020 1.52859 1.21128 0.89781 1.02097 0.98771 1.21577 1.02532 0.88123 0.90522 1.18932 0.90130 0.92499 1.11157 1.21020 0.81093 0.89470 0.73575 1.90890 1.72942 1.29862 1.45185 1.86555 1.18787 1.35842 1.83706 1.22574 0.88352 0.83776 1.05670 1.20031 0.87675 0.85670 0.84183 1.90525 1.80684 1.22223 1.56713 1.41735 1.05744 1.08042 1.64008 1.19684 0.81559 0.94738 1.50648 0.89600 1.26113 1.04949 0.94202 0.95692 1.69661 1.37708 0.99031 1.49148 0.84929 0.76102 0.77829 0.79164 1.19465 1.19554 1.19457 0.85761 0.90185 0.90184 0.79331 0.79948 0.80477 0.87317 0.87310 0.76561 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 9.81 113.37 1.11 1.13 16 2 O -0.30 -5.86 8.57 -68.59 -0.59 -6.45 16 3 C 0.20 3.78 6.70 22.86 0.15 3.93 16 4 C -0.15 -2.31 8.53 22.34 0.19 -2.12 16 5 C 0.02 0.38 6.85 36.41 0.25 0.63 16 6 N 0.02 0.49 4.45 -46.38 -0.21 0.28 16 7 O -0.16 -3.52 18.43 18.88 0.35 -3.18 16 8 O -0.16 -3.24 18.43 18.89 0.35 -2.89 16 9 C -0.10 -1.57 9.53 22.23 0.21 -1.36 16 10 C -0.01 -0.17 9.61 22.53 0.22 0.05 16 11 C -0.12 -2.86 5.88 -20.02 -0.12 -2.97 16 12 C 0.50 14.95 7.89 70.23 0.55 15.51 16 13 O -0.50 -16.50 14.95 26.81 0.40 -16.10 16 14 O -0.33 -11.30 9.01 -50.21 -0.45 -11.75 16 15 C 0.07 2.59 5.95 71.24 0.42 3.01 16 16 C 0.44 20.33 7.86 87.66 0.69 21.02 16 17 O -0.61 -33.08 16.08 15.72 0.25 -32.83 16 18 N -0.56 -27.63 5.29 -306.99 -1.62 -29.25 16 19 C -0.34 -18.40 9.68 84.04 0.81 -17.59 16 20 H 0.09 4.94 7.16 -2.91 -0.02 4.92 16 21 C -0.01 -0.45 5.50 84.93 0.47 0.02 16 22 N -0.92 -47.73 13.05 21.66 0.28 -47.45 16 23 Si 1.00 41.13 29.55 68.60 2.03 43.16 16 24 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 25 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 26 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 27 H 0.12 0.84 8.14 -2.39 -0.02 0.83 16 28 H 0.08 0.48 7.65 -2.39 -0.02 0.46 16 29 H 0.08 0.48 7.67 -2.38 -0.02 0.46 16 30 H 0.19 1.91 5.83 -2.91 -0.02 1.89 16 31 H 0.18 2.23 7.59 -2.91 -0.02 2.21 16 32 H 0.18 3.32 7.61 -2.91 -0.02 3.29 16 33 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 34 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 35 H 0.40 18.68 7.90 -92.70 -0.73 17.95 16 36 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 Total: -1.00 -70.03 337.07 6.20 -63.84 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.44 Total: 21.36 kcal Atomic # 6 Polarization: 16.29 SS G_CDS: 4.96 Total: 21.25 kcal Atomic # 7 Polarization: -74.87 SS G_CDS: -1.55 Total: -76.41 kcal Atomic # 8 Polarization: -73.51 SS G_CDS: 0.31 Total: -73.20 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -70.03 6.20 -63.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755675207.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.343 kcal (2) G-P(sol) polarization free energy of solvation -70.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds