Wall clock time and date at job start Tue Mar 31 2020 14:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45189 * 1 3 3 C 1.34228 * 117.00198 * 2 1 4 4 O 1.20823 * 119.99855 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00070 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.47380 * 305.00282 * 5 3 2 7 7 C 1.53002 * 109.46958 * 65.00364 * 5 3 2 8 8 C 1.50704 * 109.46805 * 185.00147 * 7 5 3 9 9 C 1.38237 * 119.99620 * 269.72327 * 8 7 5 10 10 C 1.38231 * 119.99864 * 179.77029 * 9 8 7 11 11 C 1.38235 * 120.00131 * 0.49989 * 10 9 8 12 12 C 1.38234 * 119.99574 * 359.75599 * 11 10 9 13 13 C 1.38228 * 120.00424 * 89.99673 * 8 7 5 14 14 O 1.45206 * 109.47004 * 185.00153 * 5 3 2 15 15 C 1.34222 * 117.00150 * 90.00016 * 14 5 3 16 16 O 1.20828 * 119.99743 * 0.02562 * 15 14 5 17 17 C 1.50697 * 120.00425 * 179.97438 * 15 14 5 18 18 S 1.80992 * 109.47466 * 180.02562 * 17 15 14 19 19 C 1.76204 * 100.00184 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99611 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.00193 * 179.97438 * 19 18 17 22 22 N 1.31627 * 119.99876 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00037 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47218 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47291 * 120.00455 * 23 21 19 26 26 H 1.48498 * 109.47636 * 240.00570 * 23 21 19 27 27 H 1.08998 * 109.47751 * 299.99968 * 1 2 3 28 28 H 1.09000 * 109.47632 * 60.00093 * 1 2 3 29 29 H 1.08998 * 109.47396 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47073 * 304.99343 * 7 5 3 31 31 H 1.08993 * 109.47403 * 64.99984 * 7 5 3 32 32 H 1.08000 * 120.00382 * 359.97438 * 9 8 7 33 33 H 1.08004 * 120.00184 * 180.23291 * 10 9 8 34 34 H 1.08002 * 120.00315 * 179.72503 * 11 10 9 35 35 H 1.08001 * 119.99809 * 179.97438 * 12 11 10 36 36 H 1.07999 * 119.99948 * 0.02562 * 13 8 7 37 37 H 1.09005 * 109.46719 * 300.00610 * 17 15 14 38 38 H 1.09000 * 109.47192 * 59.99797 * 17 15 14 39 39 H 0.97005 * 120.00336 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9597 0.7053 0.8426 7 6 4.1079 0.6925 -1.3065 8 6 5.6137 0.6582 -1.2551 9 6 6.3455 1.7394 -1.7095 10 6 7.7266 1.7099 -1.6581 11 6 8.3761 0.5952 -1.1618 12 6 7.6444 -0.4881 -0.7123 13 6 6.2632 -0.4565 -0.7590 14 8 3.9782 2.6621 0.1198 15 6 4.1561 3.1404 1.3612 16 8 3.9740 2.4235 2.3167 17 6 4.5839 4.5712 1.5634 18 16 4.7373 4.9105 3.3346 19 6 5.2345 6.6001 3.2806 20 1 5.3525 7.0980 2.3295 21 6 5.4734 7.2913 4.4602 22 7 5.3291 6.6846 5.6193 23 14 5.9998 9.0827 4.4029 24 1 6.0882 9.5276 2.9888 25 1 5.0021 9.9151 5.1218 26 1 7.3272 9.2297 5.0523 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.7259 -0.3197 -1.4392 31 1 3.7870 1.3145 -2.1420 32 1 5.8382 2.6084 -2.1017 33 1 8.2983 2.5561 -2.0096 34 1 9.4552 0.5703 -1.1257 35 1 8.1519 -1.3592 -0.3250 36 1 5.6916 -1.3031 -0.4084 37 1 5.5459 4.7348 1.0778 38 1 3.8393 5.2380 1.1285 39 1 5.4965 7.1675 6.4438 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759483266.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:47 Heat of formation + Delta-G solvation = -146.735751 kcal Electronic energy + Delta-G solvation = -24568.810447 eV Core-core repulsion = 20761.128278 eV Total energy + Delta-G solvation = -3807.682170 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.10206 -39.82813 -39.26598 -36.85030 -36.17536 -33.81851 -32.48101 -30.98195 -30.43641 -29.30529 -27.70109 -25.57225 -24.91496 -22.71452 -22.01890 -21.32963 -20.51746 -18.23777 -17.96008 -17.54365 -17.11251 -16.69905 -16.41428 -15.75144 -15.37965 -15.23014 -15.12814 -14.84225 -14.14113 -13.95968 -13.83004 -13.50309 -13.12060 -13.08184 -12.89041 -12.70010 -12.54727 -12.43548 -12.22192 -11.61550 -11.38436 -11.25042 -11.08988 -11.08792 -11.07903 -11.00100 -10.81046 -10.31608 -10.10063 -9.89317 -9.11813 -8.99936 -8.85562 -8.35727 -6.59734 -6.26953 -3.99413 1.17648 1.32351 1.97579 2.08289 2.55365 2.80409 3.20259 3.23914 3.29718 3.48353 3.65619 4.14848 4.31721 4.53892 4.63933 4.72761 4.86098 4.90502 4.91949 4.97158 4.99864 5.05706 5.09153 5.26006 5.31899 5.38512 5.48164 5.49866 5.59586 5.77511 5.88308 5.95567 6.07498 6.10555 6.35137 6.42670 6.45579 6.50995 6.89937 7.49746 7.56321 8.04659 8.31189 9.18716 10.80693 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.010755 B = 0.003709 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.750809 B = 7547.271996 C = 9470.387231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.356 6.356 3 C 0.448 3.552 4 O -0.484 6.484 5 C 0.105 3.895 6 H 0.125 0.875 7 C -0.068 4.068 8 C -0.091 4.091 9 C -0.098 4.098 10 C -0.119 4.119 11 C -0.118 4.118 12 C -0.121 4.121 13 C -0.113 4.113 14 O -0.326 6.326 15 C 0.483 3.517 16 O -0.485 6.485 17 C -0.126 4.126 18 S -0.057 6.057 19 C -0.535 4.535 20 H 0.077 0.923 21 C 0.075 3.925 22 N -0.867 5.867 23 Si 0.922 3.078 24 H -0.270 1.270 25 H -0.279 1.279 26 H -0.279 1.279 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.041 -16.139 -16.998 23.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.273 6.273 3 C 0.288 3.712 4 O -0.369 6.369 5 C 0.047 3.953 6 H 0.142 0.858 7 C -0.105 4.105 8 C -0.091 4.091 9 C -0.116 4.116 10 C -0.137 4.137 11 C -0.136 4.136 12 C -0.139 4.139 13 C -0.131 4.131 14 O -0.244 6.244 15 C 0.324 3.676 16 O -0.369 6.369 17 C -0.273 4.273 18 S 0.169 5.831 19 C -0.683 4.683 20 H 0.095 0.905 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.748 3.252 24 H -0.195 1.195 25 H -0.205 1.205 26 H -0.205 1.205 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.122 0.878 30 H 0.124 0.876 31 H 0.110 0.890 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.517 -16.742 -15.627 22.952 hybrid contribution 0.233 1.969 -0.861 2.161 sum -1.284 -14.773 -16.488 22.175 Atomic orbital electron populations 1.23314 0.75853 1.03818 1.02882 1.86464 1.23784 1.32799 1.84213 1.23981 0.92033 0.82017 0.73132 1.90727 1.66533 1.36216 1.43426 1.22025 0.86844 0.83869 1.02543 0.85773 1.20657 0.92576 1.02436 0.94807 1.19588 0.94115 0.94959 1.00478 1.21133 0.94019 0.97705 0.98784 1.21194 0.94560 0.98242 0.99731 1.21202 0.99974 0.93789 0.98654 1.21121 0.94010 0.98770 1.00039 1.21067 0.94744 0.97862 0.99429 1.86711 1.78212 1.26639 1.32794 1.23487 0.73232 0.90609 0.80245 1.90667 1.46289 1.58755 1.41214 1.23295 1.05113 0.90255 1.08680 1.85422 1.89506 1.14873 0.93250 1.22882 1.53631 0.95996 0.95771 0.90495 1.24997 0.94779 0.99273 0.94430 1.70020 1.45824 1.36932 0.97482 0.86070 0.78314 0.82419 0.78438 1.19472 1.20501 1.20493 0.91591 0.91763 0.87823 0.87567 0.88972 0.85558 0.85876 0.86113 0.86016 0.85856 0.87735 0.87646 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.16 10.53 -39.25 -0.41 -4.57 16 3 C 0.45 6.49 7.26 36.01 0.26 6.75 16 4 O -0.48 -8.63 16.26 -25.39 -0.41 -9.04 16 5 C 0.10 1.42 2.45 -27.88 -0.07 1.36 16 6 H 0.12 1.73 7.16 -51.93 -0.37 1.36 16 7 C -0.07 -0.66 5.04 -27.88 -0.14 -0.80 16 8 C -0.09 -0.98 4.97 -104.62 -0.52 -1.50 16 9 C -0.10 -1.10 9.41 -39.58 -0.37 -1.47 16 10 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 11 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 12 C -0.12 -1.19 10.05 -39.59 -0.40 -1.59 16 13 C -0.11 -1.13 9.70 -39.59 -0.38 -1.52 16 14 O -0.33 -5.39 8.93 -45.88 -0.41 -5.80 16 15 C 0.48 9.67 7.94 36.00 0.29 9.96 16 16 O -0.48 -10.91 15.08 -18.75 -0.28 -11.19 16 17 C -0.13 -2.66 6.27 36.00 0.23 -2.43 16 18 S -0.06 -1.54 20.58 -107.50 -2.21 -3.75 16 19 C -0.53 -15.16 9.50 30.94 0.29 -14.87 16 20 H 0.08 2.07 7.80 -52.49 -0.41 1.66 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -25.95 13.22 55.49 0.73 -25.22 16 23 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 27 H 0.07 0.65 8.13 -51.93 -0.42 0.22 16 28 H 0.06 0.54 8.13 -51.93 -0.42 0.11 16 29 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.11 0.78 8.06 -51.93 -0.42 0.36 16 31 H 0.09 0.83 8.08 -51.93 -0.42 0.41 16 32 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 33 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 34 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 36 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.10 2.01 8.14 -51.91 -0.42 1.59 16 38 H 0.11 2.12 8.14 -51.92 -0.42 1.70 16 39 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 364.60 15.07 5.49 5.49 Total: -1.00 -35.31 364.60 -8.15 -43.46 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -4.98 Total: 0.30 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -0.64 Total: -5.97 kcal Atomic # 7 Polarization: -25.95 SS G_CDS: 0.73 Total: -25.22 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -1.52 Total: -30.60 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.31 -8.15 -43.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759483266.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.279 kcal (2) G-P(sol) polarization free energy of solvation -35.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds