Wall clock time and date at job start Tue Mar 31 2020 14:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45189 * 1 3 3 C 1.34228 * 117.00198 * 2 1 4 4 O 1.20823 * 119.99855 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00070 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.47380 * 305.00282 * 5 3 2 7 7 C 1.53002 * 109.46958 * 65.00364 * 5 3 2 8 8 C 1.50704 * 109.46805 * 185.00147 * 7 5 3 9 9 C 1.38237 * 119.99620 * 269.72327 * 8 7 5 10 10 C 1.38231 * 119.99864 * 179.77029 * 9 8 7 11 11 C 1.38235 * 120.00131 * 0.49989 * 10 9 8 12 12 C 1.38234 * 119.99574 * 359.75599 * 11 10 9 13 13 C 1.38228 * 120.00424 * 89.99673 * 8 7 5 14 14 O 1.45206 * 109.47004 * 185.00153 * 5 3 2 15 15 C 1.34222 * 117.00150 * 90.00016 * 14 5 3 16 16 O 1.20828 * 119.99743 * 0.02562 * 15 14 5 17 17 C 1.50697 * 120.00425 * 179.97438 * 15 14 5 18 18 S 1.80992 * 109.47466 * 180.02562 * 17 15 14 19 19 C 1.76204 * 100.00184 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99611 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.00193 * 179.97438 * 19 18 17 22 22 N 1.31627 * 119.99876 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00037 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47218 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47291 * 120.00455 * 23 21 19 26 26 H 1.48498 * 109.47636 * 240.00570 * 23 21 19 27 27 H 1.08998 * 109.47751 * 299.99968 * 1 2 3 28 28 H 1.09000 * 109.47632 * 60.00093 * 1 2 3 29 29 H 1.08998 * 109.47396 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47073 * 304.99343 * 7 5 3 31 31 H 1.08993 * 109.47403 * 64.99984 * 7 5 3 32 32 H 1.08000 * 120.00382 * 359.97438 * 9 8 7 33 33 H 1.08004 * 120.00184 * 180.23291 * 10 9 8 34 34 H 1.08002 * 120.00315 * 179.72503 * 11 10 9 35 35 H 1.08001 * 119.99809 * 179.97438 * 12 11 10 36 36 H 1.07999 * 119.99948 * 0.02562 * 13 8 7 37 37 H 1.09005 * 109.46719 * 300.00610 * 17 15 14 38 38 H 1.09000 * 109.47192 * 59.99797 * 17 15 14 39 39 H 0.97005 * 120.00336 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9597 0.7053 0.8426 7 6 4.1079 0.6925 -1.3065 8 6 5.6137 0.6582 -1.2551 9 6 6.3455 1.7394 -1.7095 10 6 7.7266 1.7099 -1.6581 11 6 8.3761 0.5952 -1.1618 12 6 7.6444 -0.4881 -0.7123 13 6 6.2632 -0.4565 -0.7590 14 8 3.9782 2.6621 0.1198 15 6 4.1561 3.1404 1.3612 16 8 3.9740 2.4235 2.3167 17 6 4.5839 4.5712 1.5634 18 16 4.7373 4.9105 3.3346 19 6 5.2345 6.6001 3.2806 20 1 5.3525 7.0980 2.3295 21 6 5.4734 7.2913 4.4602 22 7 5.3291 6.6846 5.6193 23 14 5.9998 9.0827 4.4029 24 1 6.0882 9.5276 2.9888 25 1 5.0021 9.9151 5.1218 26 1 7.3272 9.2297 5.0523 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.7259 -0.3197 -1.4392 31 1 3.7870 1.3145 -2.1420 32 1 5.8382 2.6084 -2.1017 33 1 8.2983 2.5561 -2.0096 34 1 9.4552 0.5703 -1.1257 35 1 8.1519 -1.3592 -0.3250 36 1 5.6916 -1.3031 -0.4084 37 1 5.5459 4.7348 1.0778 38 1 3.8393 5.2380 1.1285 39 1 5.4965 7.1675 6.4438 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759483266.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:46 Heat of formation + Delta-G solvation = -166.059447 kcal Electronic energy + Delta-G solvation = -24569.648386 eV Core-core repulsion = 20761.128278 eV Total energy + Delta-G solvation = -3808.520108 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.34025 -41.13119 -40.08923 -38.10424 -37.44266 -34.78846 -34.62746 -31.73994 -31.72124 -30.60481 -28.50118 -27.72970 -25.84457 -23.57786 -23.26255 -22.20260 -21.70256 -20.00716 -19.25806 -19.01902 -18.25857 -17.70882 -17.36163 -17.21381 -16.91149 -16.70781 -16.20067 -15.99388 -15.84207 -14.97679 -14.89762 -14.58176 -14.35828 -14.23637 -14.11079 -13.87036 -13.84728 -13.28313 -13.20741 -13.12159 -12.93240 -12.78598 -12.64949 -12.59116 -12.09712 -11.94010 -11.85980 -11.78905 -11.72936 -11.41996 -11.18747 -10.41830 -9.76952 -9.64578 -8.76202 -8.39077 -6.19215 0.37168 0.55101 0.74440 0.87436 0.97170 1.35415 1.41418 1.47190 1.57033 1.84867 2.21972 2.85778 2.96295 3.20758 3.38035 3.57429 3.69775 3.72116 3.94520 4.04384 4.10908 4.20856 4.24562 4.27238 4.34350 4.36828 4.44532 4.64213 4.66178 4.73942 4.80548 5.00436 5.09267 5.16308 5.21655 5.39965 5.59923 5.67553 5.69655 6.15480 6.16955 6.36062 6.54466 7.02744 8.70630 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.010755 B = 0.003709 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.750809 B = 7547.271996 C = 9470.387231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.347 6.347 3 C 0.451 3.549 4 O -0.525 6.525 5 C 0.100 3.900 6 H 0.122 0.878 7 C -0.057 4.057 8 C -0.104 4.104 9 C -0.116 4.116 10 C -0.135 4.135 11 C -0.128 4.128 12 C -0.131 4.131 13 C -0.120 4.120 14 O -0.318 6.318 15 C 0.490 3.510 16 O -0.515 6.515 17 C -0.107 4.107 18 S -0.133 6.133 19 C -0.548 4.548 20 H 0.086 0.914 21 C 0.018 3.982 22 N -0.910 5.910 23 Si 1.000 3.000 24 H -0.257 1.257 25 H -0.274 1.274 26 H -0.271 1.271 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.144 0.856 30 H 0.137 0.863 31 H 0.101 0.899 32 H 0.127 0.873 33 H 0.134 0.866 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.126 0.874 38 H 0.117 0.883 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.717 -16.581 -18.635 24.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.263 6.263 3 C 0.293 3.707 4 O -0.413 6.413 5 C 0.043 3.957 6 H 0.140 0.860 7 C -0.094 4.094 8 C -0.104 4.104 9 C -0.134 4.134 10 C -0.152 4.152 11 C -0.146 4.146 12 C -0.149 4.149 13 C -0.138 4.138 14 O -0.235 6.235 15 C 0.333 3.667 16 O -0.403 6.403 17 C -0.255 4.255 18 S 0.094 5.906 19 C -0.696 4.696 20 H 0.104 0.896 21 C -0.188 4.188 22 N -0.546 5.546 23 Si 0.822 3.178 24 H -0.181 1.181 25 H -0.199 1.199 26 H -0.197 1.197 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.162 0.838 30 H 0.155 0.845 31 H 0.119 0.881 32 H 0.145 0.855 33 H 0.151 0.849 34 H 0.156 0.844 35 H 0.160 0.840 36 H 0.162 0.838 37 H 0.144 0.856 38 H 0.135 0.865 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.196 -17.222 -17.299 24.439 hybrid contribution 0.078 1.931 -0.444 1.983 sum -1.118 -15.291 -17.743 23.449 Atomic orbital electron populations 1.23671 0.74031 1.06364 1.02597 1.86461 1.25471 1.31022 1.83366 1.24117 0.92270 0.82216 0.72053 1.90714 1.67388 1.37598 1.45610 1.22445 0.86768 0.81885 1.04609 0.86016 1.20735 0.92062 1.03866 0.92698 1.19733 0.94501 0.95235 1.00959 1.21318 0.94535 0.98131 0.99442 1.21440 0.94696 0.99025 1.00082 1.21515 1.01086 0.93715 0.98291 1.21467 0.94263 0.99431 0.99718 1.21392 0.95186 0.98309 0.98915 1.86666 1.77730 1.28734 1.30336 1.23152 0.72651 0.90010 0.80912 1.90654 1.47760 1.59430 1.42427 1.23079 1.06760 0.91646 1.04042 1.85512 1.89855 1.15755 0.99487 1.23220 1.53751 0.96116 0.96481 0.89618 1.26109 0.94418 1.04426 0.93801 1.70167 1.46916 1.39138 0.98384 0.84884 0.77997 0.75833 0.79120 1.18054 1.19910 1.19659 0.92865 0.91161 0.83846 0.84517 0.88097 0.85477 0.84851 0.84448 0.84030 0.83820 0.85605 0.86471 0.91797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.61 16 2 O -0.35 -7.51 10.53 -51.40 -0.54 -8.05 16 3 C 0.45 12.68 7.26 71.24 0.52 13.20 16 4 O -0.52 -18.67 16.26 28.33 0.46 -18.21 16 5 C 0.10 2.61 2.45 29.85 0.07 2.69 16 6 H 0.12 3.31 7.16 -2.39 -0.02 3.29 16 7 C -0.06 -1.00 5.04 29.85 0.15 -0.85 16 8 C -0.10 -2.08 4.97 -19.87 -0.10 -2.18 16 9 C -0.12 -2.49 9.41 22.27 0.21 -2.28 16 10 C -0.13 -2.74 10.05 22.27 0.22 -2.51 16 11 C -0.13 -2.41 10.05 22.27 0.22 -2.19 16 12 C -0.13 -2.34 10.05 22.27 0.22 -2.12 16 13 C -0.12 -2.18 9.70 22.27 0.22 -1.96 16 14 O -0.32 -10.33 8.93 -44.99 -0.40 -10.73 16 15 C 0.49 19.69 7.94 71.24 0.57 20.25 16 16 O -0.52 -23.60 15.08 21.96 0.33 -23.27 16 17 C -0.11 -4.52 6.27 71.24 0.45 -4.07 16 18 S -0.13 -7.38 20.58 -56.49 -1.16 -8.54 16 19 C -0.55 -31.23 9.50 67.95 0.65 -30.58 16 20 H 0.09 4.56 7.80 -2.91 -0.02 4.54 16 21 C 0.02 0.99 5.49 84.86 0.47 1.46 16 22 N -0.91 -55.28 13.22 21.65 0.29 -54.99 16 23 Si 1.00 43.39 29.55 68.60 2.03 45.42 16 24 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 26 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 27 H 0.05 1.00 8.13 -2.39 -0.02 0.98 16 28 H 0.07 1.06 8.13 -2.39 -0.02 1.04 16 29 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.14 1.58 8.06 -2.39 -0.02 1.56 16 31 H 0.10 1.62 8.08 -2.39 -0.02 1.60 16 32 H 0.13 2.57 8.06 -2.91 -0.02 2.55 16 33 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 34 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 35 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 36 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 37 H 0.13 4.75 8.14 -2.39 -0.02 4.73 16 38 H 0.12 4.67 8.14 -2.39 -0.02 4.65 16 39 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 Total: -1.00 -77.72 364.60 7.12 -70.61 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 1.06 Total: 17.31 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: 5.06 Total: -9.53 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 0.29 Total: -54.99 kcal Atomic # 8 Polarization: -60.11 SS G_CDS: -0.15 Total: -60.26 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: -7.38 SS G_CDS: -1.16 Total: -8.54 kcal Total: -77.72 7.12 -70.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759483266.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.453 kcal (2) G-P(sol) polarization free energy of solvation -77.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds