Wall clock time and date at job start Tue Mar 31 2020 14:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34232 * 117.00123 * 2 1 4 4 O 1.20829 * 119.99784 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00134 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.47477 * 59.99633 * 5 3 2 7 7 C 1.53011 * 109.46943 * 299.99891 * 5 3 2 8 8 C 1.50700 * 109.46883 * 175.00340 * 7 5 3 9 9 C 1.38232 * 119.99655 * 269.72085 * 8 7 5 10 10 C 1.38239 * 119.99698 * 179.76796 * 9 8 7 11 11 C 1.38231 * 120.00122 * 0.50995 * 10 9 8 12 12 C 1.38238 * 119.99794 * 359.74578 * 11 10 9 13 13 C 1.38229 * 120.00269 * 0.02562 * 12 11 10 14 14 O 1.45201 * 109.47225 * 179.97438 * 5 3 2 15 15 C 1.34222 * 117.00137 * 269.99702 * 14 5 3 16 16 O 1.20833 * 119.99852 * 0.02562 * 15 14 5 17 17 C 1.50696 * 120.00432 * 179.71953 * 15 14 5 18 18 S 1.80997 * 109.47482 * 180.27682 * 17 15 14 19 19 C 1.76202 * 100.00062 * 180.02562 * 18 17 15 20 20 H 1.07997 * 119.99653 * 0.02562 * 19 18 17 21 21 C 1.38802 * 119.99986 * 180.02562 * 19 18 17 22 22 N 1.31632 * 119.99638 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99763 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47369 * 59.99919 * 23 21 19 25 25 H 1.48505 * 109.47033 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47342 * 299.99691 * 23 21 19 27 27 H 1.08998 * 109.46848 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46810 * 299.99911 * 1 2 3 29 29 H 1.09001 * 109.46940 * 60.00249 * 1 2 3 30 30 H 1.09002 * 109.46612 * 295.00058 * 7 5 3 31 31 H 1.08998 * 109.47034 * 55.00107 * 7 5 3 32 32 H 1.08006 * 120.00098 * 0.02562 * 9 8 7 33 33 H 1.08003 * 119.99604 * 180.23432 * 10 9 8 34 34 H 1.07997 * 120.00362 * 179.72366 * 11 10 9 35 35 H 1.08000 * 119.99778 * 179.97438 * 12 11 10 36 36 H 1.08005 * 120.00625 * 179.97438 * 13 12 11 37 37 H 1.09000 * 109.47190 * 300.28287 * 17 15 14 38 38 H 1.09006 * 109.46468 * 60.27870 * 17 15 14 39 39 H 0.96999 * 119.99316 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9558 0.7809 -0.8907 7 6 4.1139 0.5810 1.2484 8 6 5.6194 0.5517 1.1875 9 6 6.2665 -0.5183 0.5983 10 6 7.6473 -0.5429 0.5381 11 6 8.3813 0.4974 1.0765 12 6 7.7342 1.5649 1.6704 13 6 6.3533 1.5918 1.7264 14 8 3.9781 2.6673 -0.0011 15 6 4.1505 3.2514 -1.1972 16 8 3.9631 2.6201 -2.2104 17 6 4.5710 4.6963 -1.2767 18 16 4.7096 5.1898 -3.0125 19 6 5.2004 6.8705 -2.8145 20 1 5.3245 7.2837 -1.8245 21 6 5.4277 7.6632 -3.9310 22 7 5.2769 7.1593 -5.1377 23 14 5.9487 9.4447 -3.7210 24 1 7.2310 9.5007 -2.9743 25 1 6.1254 10.0695 -5.0566 26 1 4.9033 10.1805 -2.9654 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.7967 1.1280 2.1363 31 1 3.7321 -0.4389 1.2942 32 1 5.6931 -1.3331 0.1813 33 1 8.1528 -1.3771 0.0744 34 1 9.4602 0.4761 1.0335 35 1 8.3077 2.3775 2.0914 36 1 5.8477 2.4257 2.1908 37 1 3.8270 5.3191 -0.7801 38 1 5.5359 4.8213 -0.7852 39 1 5.4361 7.7132 -5.9178 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759483270.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:49 Heat of formation + Delta-G solvation = -166.046920 kcal Electronic energy + Delta-G solvation = -24571.423815 eV Core-core repulsion = 20762.904250 eV Total energy + Delta-G solvation = -3808.519565 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.33785 -41.12441 -40.08633 -38.09386 -37.44591 -34.78662 -34.62375 -31.73707 -31.71907 -30.60725 -28.48404 -27.72337 -25.84379 -23.57543 -23.25811 -22.19771 -21.71317 -20.00305 -19.23870 -19.01881 -18.27876 -17.68002 -17.35012 -17.22630 -16.90515 -16.70211 -16.19768 -15.99009 -15.84176 -14.96793 -14.89350 -14.57239 -14.37514 -14.23666 -14.10572 -13.87090 -13.83189 -13.28651 -13.21441 -13.11733 -12.88646 -12.78353 -12.66630 -12.58601 -12.09841 -11.93742 -11.85823 -11.82546 -11.72402 -11.41809 -11.15530 -10.42490 -9.76819 -9.64315 -8.76079 -8.38481 -6.18893 0.37301 0.55220 0.75833 0.86149 0.98878 1.35478 1.44308 1.47081 1.54971 1.84940 2.22739 2.85646 2.96654 3.21098 3.37604 3.57589 3.70368 3.72420 3.95159 4.04679 4.11145 4.21007 4.25046 4.27517 4.34447 4.36862 4.45219 4.64600 4.66602 4.74769 4.80905 5.01008 5.09491 5.16613 5.21805 5.39546 5.60050 5.67654 5.69905 6.15641 6.16741 6.36558 6.54862 7.02925 8.70736 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.010801 B = 0.003701 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.611152 B = 7563.084838 C = 9486.261897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.346 6.346 3 C 0.451 3.549 4 O -0.526 6.526 5 C 0.100 3.900 6 H 0.123 0.877 7 C -0.057 4.057 8 C -0.104 4.104 9 C -0.120 4.120 10 C -0.131 4.131 11 C -0.128 4.128 12 C -0.135 4.135 13 C -0.116 4.116 14 O -0.318 6.318 15 C 0.491 3.509 16 O -0.515 6.515 17 C -0.107 4.107 18 S -0.133 6.133 19 C -0.550 4.550 20 H 0.086 0.914 21 C 0.018 3.982 22 N -0.910 5.910 23 Si 0.999 3.001 24 H -0.260 1.260 25 H -0.277 1.277 26 H -0.263 1.263 27 H 0.144 0.856 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.101 0.899 31 H 0.137 0.863 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.137 0.863 35 H 0.133 0.867 36 H 0.127 0.873 37 H 0.117 0.883 38 H 0.126 0.874 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.575 -18.157 17.374 25.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.262 6.262 3 C 0.294 3.706 4 O -0.414 6.414 5 C 0.043 3.957 6 H 0.140 0.860 7 C -0.093 4.093 8 C -0.104 4.104 9 C -0.138 4.138 10 C -0.149 4.149 11 C -0.146 4.146 12 C -0.152 4.152 13 C -0.134 4.134 14 O -0.235 6.235 15 C 0.333 3.667 16 O -0.403 6.403 17 C -0.255 4.255 18 S 0.094 5.906 19 C -0.698 4.698 20 H 0.104 0.896 21 C -0.187 4.187 22 N -0.546 5.546 23 Si 0.821 3.179 24 H -0.184 1.184 25 H -0.202 1.202 26 H -0.188 1.188 27 H 0.162 0.838 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.119 0.881 31 H 0.155 0.845 32 H 0.162 0.838 33 H 0.160 0.840 34 H 0.155 0.845 35 H 0.151 0.849 36 H 0.145 0.855 37 H 0.135 0.865 38 H 0.144 0.856 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.060 -18.678 15.954 24.587 hybrid contribution 0.078 1.885 0.607 1.982 sum -0.981 -16.793 16.561 23.605 Atomic orbital electron populations 1.23673 0.74043 1.06365 1.02572 1.86460 1.25443 1.30927 1.83382 1.24117 0.92263 0.82226 0.72027 1.90721 1.67398 1.37660 1.45662 1.22448 0.86750 0.81309 1.05194 0.85982 1.20746 0.91957 1.02610 0.94035 1.19746 0.94555 0.95722 1.00423 1.21397 0.95193 0.98471 0.98748 1.21469 0.94266 0.99481 0.99679 1.21512 1.01079 0.94197 0.97837 1.21439 0.94719 0.99092 0.99997 1.21321 0.94513 0.98121 0.99482 1.86659 1.77774 1.26697 1.32359 1.23138 0.72602 0.89615 0.81298 1.90653 1.47617 1.65044 1.36989 1.23078 1.06815 0.90989 1.04634 1.85512 1.90133 1.14022 1.00932 1.23159 1.54122 0.96010 0.96478 0.89597 1.26113 0.94364 1.04465 0.93780 1.70159 1.46848 1.38863 0.98717 0.84989 0.79285 0.75766 0.77893 1.18439 1.20222 1.18766 0.83795 0.91261 0.92847 0.88070 0.84476 0.83818 0.84044 0.84464 0.84860 0.85466 0.86479 0.85602 0.91794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.61 16 2 O -0.35 -7.36 10.37 -51.43 -0.53 -7.90 16 3 C 0.45 12.67 7.30 71.24 0.52 13.19 16 4 O -0.53 -18.88 16.21 28.32 0.46 -18.42 16 5 C 0.10 2.61 2.45 29.85 0.07 2.68 16 6 H 0.12 3.32 7.15 -2.39 -0.02 3.31 16 7 C -0.06 -0.99 5.03 29.85 0.15 -0.84 16 8 C -0.10 -2.08 4.97 -19.87 -0.10 -2.17 16 9 C -0.12 -2.18 9.70 22.27 0.22 -1.96 16 10 C -0.13 -2.35 10.05 22.27 0.22 -2.12 16 11 C -0.13 -2.41 10.05 22.27 0.22 -2.19 16 12 C -0.13 -2.74 10.05 22.27 0.22 -2.51 16 13 C -0.12 -2.49 9.40 22.27 0.21 -2.28 16 14 O -0.32 -10.33 8.93 -44.97 -0.40 -10.73 16 15 C 0.49 19.77 7.90 71.23 0.56 20.33 16 16 O -0.52 -23.72 15.08 21.94 0.33 -23.39 16 17 C -0.11 -4.52 6.27 71.23 0.45 -4.08 16 18 S -0.13 -7.40 20.57 -56.49 -1.16 -8.56 16 19 C -0.55 -31.39 9.50 67.95 0.65 -30.74 16 20 H 0.09 4.55 7.80 -2.91 -0.02 4.53 16 21 C 0.02 1.02 5.49 84.86 0.47 1.49 16 22 N -0.91 -55.39 13.22 21.65 0.29 -55.11 16 23 Si 1.00 43.36 29.55 68.60 2.03 45.39 16 24 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 25 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 26 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 27 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.07 1.05 8.13 -2.39 -0.02 1.03 16 29 H 0.05 0.99 8.13 -2.39 -0.02 0.98 16 30 H 0.10 1.60 8.09 -2.39 -0.02 1.58 16 31 H 0.14 1.58 7.94 -2.39 -0.02 1.56 16 32 H 0.14 1.90 8.06 -2.91 -0.02 1.87 16 33 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 34 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 35 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 36 H 0.13 2.56 8.06 -2.91 -0.02 2.54 16 37 H 0.12 4.68 8.14 -2.40 -0.02 4.66 16 38 H 0.13 4.75 8.14 -2.39 -0.02 4.73 16 39 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -77.97 364.25 7.12 -70.84 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 1.06 Total: 17.46 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: 5.06 Total: -9.60 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: 0.29 Total: -55.11 kcal Atomic # 8 Polarization: -60.29 SS G_CDS: -0.15 Total: -60.43 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: -7.40 SS G_CDS: -1.16 Total: -8.56 kcal Total: -77.97 7.12 -70.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759483270.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.203 kcal (2) G-P(sol) polarization free energy of solvation -77.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds