Wall clock time and date at job start Tue Mar 31 2020 13:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99888 * 2 1 4 4 H 1.48498 * 109.47325 * 239.99904 * 3 2 1 5 5 H 1.48498 * 109.47262 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46958 * 120.00069 * 3 2 1 7 7 C 1.37874 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99959 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00366 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47550 * 180.02562 * 9 7 2 11 11 C 1.46499 * 120.00174 * 84.23693 * 10 9 7 12 12 C 1.50693 * 109.46879 * 270.00228 * 11 10 9 13 13 C 1.38676 * 120.42165 * 270.24696 * 12 11 10 14 14 C 1.38629 * 118.42025 * 180.24840 * 13 12 11 15 15 C 1.38223 * 119.16302 * 359.74962 * 14 13 12 16 16 N 1.31850 * 120.76365 * 0.02562 * 15 14 13 17 17 C 1.31886 * 121.72697 * 359.97438 * 16 15 14 18 18 C 1.34780 * 119.99796 * 264.23927 * 10 9 7 19 19 O 1.21281 * 119.99721 * 174.35492 * 18 10 9 20 20 C 1.50699 * 120.00385 * 354.36085 * 18 10 9 21 21 S 1.82847 * 110.30985 * 304.44385 * 20 18 10 22 22 C 1.82923 * 99.53504 * 217.12073 * 21 20 18 23 23 C 1.54492 * 104.97856 * 44.29006 * 22 21 20 24 24 S 1.82127 * 106.98070 * 313.62328 * 23 22 21 25 25 H 0.97007 * 120.00459 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46684 * 60.00434 * 9 7 2 27 27 H 1.09000 * 109.47472 * 300.00982 * 9 7 2 28 28 H 1.08997 * 109.47167 * 150.00303 * 11 10 9 29 29 H 1.08998 * 109.46805 * 30.00199 * 11 10 9 30 30 H 1.08002 * 120.78681 * 359.97438 * 13 12 11 31 31 H 1.08002 * 120.41336 * 179.73358 * 14 13 12 32 32 H 1.08002 * 119.61742 * 180.02562 * 15 14 13 33 33 H 1.07999 * 119.61428 * 179.97438 * 17 16 15 34 34 H 1.09002 * 110.27543 * 66.64381 * 20 18 10 35 35 H 1.09007 * 110.33942 * 285.41284 * 22 21 20 36 36 H 1.08999 * 110.43164 * 163.21136 * 22 21 20 37 37 H 1.08994 * 109.96161 * 194.24852 * 23 22 21 38 38 H 1.08998 * 109.98853 * 73.02041 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.7759 -4.0867 1.2618 12 6 4.0467 -3.3305 1.5519 13 6 5.2656 -3.8017 1.0878 14 6 6.4092 -3.0759 1.3832 15 6 6.2968 -1.9124 2.1208 16 7 5.1202 -1.4919 2.5420 17 6 4.0116 -2.1565 2.2798 18 6 2.5519 -4.2010 -1.1619 19 8 3.4151 -5.0528 -1.1748 20 6 1.8695 -3.8003 -2.4444 21 16 0.0579 -3.9906 -2.2857 22 6 -0.3333 -4.5833 -3.9714 23 6 0.7473 -5.6426 -4.2830 24 16 2.3497 -4.9270 -3.7960 25 1 -0.4851 0.8401 0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 0.6246 -2.5571 0.8896 28 1 2.9963 -5.1513 1.1836 29 1 2.0625 -3.9216 2.0691 30 1 5.3231 -4.7146 0.5136 31 1 7.3758 -3.4156 1.0415 32 1 7.1829 -1.3410 2.3548 33 1 3.0660 -1.7811 2.6421 34 1 2.1224 -2.7716 -2.7014 35 1 -0.2751 -3.7614 -4.6851 36 1 -1.3249 -5.0353 -3.9953 37 1 0.7497 -5.8692 -5.3492 38 1 0.5555 -6.5500 -3.7104 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760191379.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:32 Heat of formation + Delta-G solvation = 17.681534 kcal Electronic energy + Delta-G solvation = -23345.305732 eV Core-core repulsion = 20019.798853 eV Total energy + Delta-G solvation = -3325.506879 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.94734 -38.89778 -35.36520 -33.13043 -33.01569 -32.10760 -31.30474 -29.44581 -27.60768 -25.58446 -23.70563 -23.14890 -22.92170 -21.80407 -19.13672 -17.16662 -16.96079 -16.84249 -16.45706 -16.06463 -15.69291 -15.28652 -15.11968 -14.83830 -14.45217 -14.16124 -13.72698 -13.41720 -13.04368 -12.78484 -12.58507 -12.51705 -12.37181 -12.21398 -11.96923 -11.85289 -11.52151 -11.33947 -10.93397 -10.86345 -10.44938 -10.20132 -9.84835 -9.59935 -9.43976 -9.26069 -9.02105 -8.63285 -8.46806 -7.95074 -7.64428 -7.50312 -6.20848 -4.27753 1.21005 1.50861 1.58721 1.76132 1.90410 2.75909 3.26192 3.28472 3.30023 3.38557 3.66376 4.31866 4.35196 4.45782 4.81495 4.89319 4.94271 5.13614 5.20302 5.23365 5.33302 5.40401 5.40843 5.47265 5.54011 5.60813 5.71636 6.00338 6.07316 6.26872 6.54274 6.57482 6.76953 7.11091 7.17309 7.33353 7.71393 7.97058 8.08176 8.44882 8.61114 8.81355 9.39469 10.85008 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.011175 B = 0.006098 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.083470 B = 4590.524851 C = 6268.654378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.073 3.927 3 Si 0.887 3.113 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.539 4.539 8 H 0.061 0.939 9 C 0.228 3.772 10 N -0.582 5.582 11 C 0.170 3.830 12 C -0.146 4.146 13 C -0.056 4.056 14 C -0.189 4.189 15 C 0.090 3.910 16 N -0.493 5.493 17 C 0.142 3.858 18 C 0.542 3.458 19 O -0.534 6.534 20 C -0.044 4.044 21 S -0.165 6.165 22 C -0.122 4.122 23 C -0.093 4.093 24 S -0.203 6.203 25 H 0.266 0.734 26 H 0.061 0.939 27 H 0.039 0.961 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.135 0.865 31 H 0.126 0.874 32 H 0.146 0.854 33 H 0.159 0.841 34 H 0.150 0.850 35 H 0.100 0.900 36 H 0.121 0.879 37 H 0.114 0.886 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.796 -9.133 -3.330 9.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.131 4.131 3 Si 0.714 3.286 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.577 4.577 8 H 0.079 0.921 9 C 0.108 3.892 10 N -0.312 5.312 11 C 0.046 3.954 12 C -0.149 4.149 13 C -0.083 4.083 14 C -0.208 4.208 15 C -0.066 4.066 16 N -0.201 5.201 17 C -0.016 4.016 18 C 0.325 3.675 19 O -0.412 6.412 20 C -0.285 4.285 21 S 0.062 5.938 22 C -0.271 4.271 23 C -0.244 4.244 24 S 0.023 5.977 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.057 0.943 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.153 0.847 31 H 0.144 0.856 32 H 0.163 0.837 33 H 0.176 0.824 34 H 0.168 0.832 35 H 0.118 0.882 36 H 0.139 0.861 37 H 0.133 0.867 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.307 -8.683 -2.387 9.296 hybrid contribution 0.058 0.618 -1.187 1.340 sum 2.365 -8.066 -3.574 9.134 Atomic orbital electron populations 1.69915 1.05863 1.27438 1.48729 1.24857 0.94750 0.99040 0.94501 0.86695 0.79769 0.82836 0.79252 1.20313 1.21118 1.19447 1.21370 0.93472 0.90072 1.52831 0.92058 1.19881 0.87328 0.82570 0.99412 1.48122 1.44416 1.34565 1.04132 1.20137 0.91566 0.97237 0.86496 1.21211 0.96045 0.98068 0.99540 1.21594 0.91817 0.99440 0.95408 1.22018 0.99274 0.97640 1.01917 1.22652 0.95650 0.93852 0.94495 1.67714 0.98784 1.32265 1.21376 1.22756 0.96508 0.89570 0.92723 1.19209 0.82769 0.81632 0.83926 1.90643 1.31785 1.33285 1.85486 1.25864 0.97784 1.06174 0.98706 1.88361 1.02984 1.86049 1.16398 1.24756 1.02194 1.00600 0.99580 1.24395 0.93244 1.01225 1.05523 1.87130 1.14581 1.55288 1.40708 0.92418 0.92194 0.94257 0.89927 0.89419 0.84716 0.85602 0.83655 0.82380 0.83237 0.88186 0.86134 0.86741 0.88350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.54 13.29 55.43 0.74 -22.80 16 2 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 3 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.54 -13.40 8.36 -34.44 -0.29 -13.68 16 8 H 0.06 1.60 6.70 -52.48 -0.35 1.25 16 9 C 0.23 5.12 4.87 -5.20 -0.03 5.09 16 10 N -0.58 -11.58 2.45 -176.44 -0.43 -12.01 16 11 C 0.17 2.95 5.55 -5.20 -0.03 2.92 16 12 C -0.15 -2.60 5.03 -104.48 -0.53 -3.13 16 13 C -0.06 -0.95 9.72 -39.28 -0.38 -1.33 16 14 C -0.19 -2.88 10.11 -39.44 -0.40 -3.28 16 15 C 0.09 1.46 11.18 -17.55 -0.20 1.26 16 16 N -0.49 -9.37 10.36 -13.25 -0.14 -9.51 16 17 C 0.14 2.68 9.19 -17.55 -0.16 2.52 16 18 C 0.54 10.88 7.14 -10.98 -0.08 10.80 16 19 O -0.53 -11.24 14.87 5.56 0.08 -11.16 16 20 C -0.04 -0.80 3.13 36.00 0.11 -0.69 16 21 S -0.16 -2.78 19.06 -104.25 -1.99 -4.77 16 22 C -0.12 -1.45 7.04 37.94 0.27 -1.19 16 23 C -0.09 -1.08 6.84 37.94 0.26 -0.82 16 24 S -0.20 -3.28 21.51 -104.25 -2.24 -5.52 16 25 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 26 H 0.06 1.39 3.91 -28.41 -0.11 1.28 16 27 H 0.04 0.93 7.97 -51.93 -0.41 0.52 16 28 H 0.08 1.36 7.46 -51.93 -0.39 0.97 16 29 H 0.09 1.38 7.90 -51.93 -0.41 0.97 16 30 H 0.13 2.25 7.44 -52.49 -0.39 1.86 16 31 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 32 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 33 H 0.16 3.03 8.06 -52.49 -0.42 2.61 16 34 H 0.15 2.96 8.14 -51.93 -0.42 2.54 16 35 H 0.10 1.14 8.14 -51.92 -0.42 0.71 16 36 H 0.12 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 340.58 15.07 5.13 5.13 Total: -1.00 -29.19 340.58 -9.99 -39.18 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -4.58 Total: 5.37 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -1.54 Total: 0.27 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 0.17 Total: -44.32 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.08 Total: -11.16 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: -6.06 SS G_CDS: -4.23 Total: -10.29 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.19 -9.99 -39.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760191379.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.866 kcal (2) G-P(sol) polarization free energy of solvation -29.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds