Wall clock time and date at job start Tue Mar 31 2020 13:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99888 * 2 1 4 4 H 1.48498 * 109.47325 * 239.99904 * 3 2 1 5 5 H 1.48498 * 109.47262 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46958 * 120.00069 * 3 2 1 7 7 C 1.37874 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99959 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00366 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47550 * 180.02562 * 9 7 2 11 11 C 1.46499 * 120.00174 * 84.23693 * 10 9 7 12 12 C 1.50693 * 109.46879 * 270.00228 * 11 10 9 13 13 C 1.38676 * 120.42165 * 270.24696 * 12 11 10 14 14 C 1.38629 * 118.42025 * 180.24840 * 13 12 11 15 15 C 1.38223 * 119.16302 * 359.74962 * 14 13 12 16 16 N 1.31850 * 120.76365 * 0.02562 * 15 14 13 17 17 C 1.31886 * 121.72697 * 359.97438 * 16 15 14 18 18 C 1.34780 * 119.99796 * 264.23927 * 10 9 7 19 19 O 1.21281 * 119.99721 * 174.35492 * 18 10 9 20 20 C 1.50699 * 120.00385 * 354.36085 * 18 10 9 21 21 S 1.82847 * 110.30985 * 304.44385 * 20 18 10 22 22 C 1.82923 * 99.53504 * 217.12073 * 21 20 18 23 23 C 1.54492 * 104.97856 * 44.29006 * 22 21 20 24 24 S 1.82127 * 106.98070 * 313.62328 * 23 22 21 25 25 H 0.97007 * 120.00459 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46684 * 60.00434 * 9 7 2 27 27 H 1.09000 * 109.47472 * 300.00982 * 9 7 2 28 28 H 1.08997 * 109.47167 * 150.00303 * 11 10 9 29 29 H 1.08998 * 109.46805 * 30.00199 * 11 10 9 30 30 H 1.08002 * 120.78681 * 359.97438 * 13 12 11 31 31 H 1.08002 * 120.41336 * 179.73358 * 14 13 12 32 32 H 1.08002 * 119.61742 * 180.02562 * 15 14 13 33 33 H 1.07999 * 119.61428 * 179.97438 * 17 16 15 34 34 H 1.09002 * 110.27543 * 66.64381 * 20 18 10 35 35 H 1.09007 * 110.33942 * 285.41284 * 22 21 20 36 36 H 1.08999 * 110.43164 * 163.21136 * 22 21 20 37 37 H 1.08994 * 109.96161 * 194.24852 * 23 22 21 38 38 H 1.08998 * 109.98853 * 73.02041 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.7759 -4.0867 1.2618 12 6 4.0467 -3.3305 1.5519 13 6 5.2656 -3.8017 1.0878 14 6 6.4092 -3.0759 1.3832 15 6 6.2968 -1.9124 2.1208 16 7 5.1202 -1.4919 2.5420 17 6 4.0116 -2.1565 2.2798 18 6 2.5519 -4.2010 -1.1619 19 8 3.4151 -5.0528 -1.1748 20 6 1.8695 -3.8003 -2.4444 21 16 0.0579 -3.9906 -2.2857 22 6 -0.3333 -4.5833 -3.9714 23 6 0.7473 -5.6426 -4.2830 24 16 2.3497 -4.9270 -3.7960 25 1 -0.4851 0.8401 0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 0.6246 -2.5571 0.8896 28 1 2.9963 -5.1513 1.1836 29 1 2.0625 -3.9216 2.0691 30 1 5.3231 -4.7146 0.5136 31 1 7.3758 -3.4156 1.0415 32 1 7.1829 -1.3410 2.3548 33 1 3.0660 -1.7811 2.6421 34 1 2.1224 -2.7716 -2.7014 35 1 -0.2751 -3.7614 -4.6851 36 1 -1.3249 -5.0353 -3.9953 37 1 0.7497 -5.8692 -5.3492 38 1 0.5555 -6.5500 -3.7104 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760191379.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:31 Heat of formation + Delta-G solvation = 1.800191 kcal Electronic energy + Delta-G solvation = -23345.994399 eV Core-core repulsion = 20019.798853 eV Total energy + Delta-G solvation = -3326.195546 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.37927 -40.38794 -36.98680 -34.80206 -34.13096 -33.66815 -32.65359 -30.85253 -29.42230 -27.04779 -24.92856 -24.66999 -24.37710 -23.16707 -20.62844 -18.80445 -18.62189 -18.24090 -17.83649 -17.48621 -17.02357 -16.77239 -16.56021 -16.37099 -15.89609 -15.54530 -14.89187 -14.79830 -14.50741 -14.28568 -14.09407 -13.91959 -13.74007 -13.57481 -13.32962 -13.27554 -13.07955 -12.90400 -12.73054 -12.43752 -12.12757 -11.82256 -11.49597 -11.14348 -10.76797 -10.70005 -10.46754 -10.40996 -9.90069 -9.55089 -8.93171 -8.83811 -8.19335 -6.29394 -0.04389 0.16878 0.25482 0.40910 0.80967 1.35666 1.38882 1.45085 1.60539 1.75642 2.17063 2.39482 2.97454 3.13027 3.38289 3.48809 3.60855 3.89050 3.95315 3.96285 3.99931 4.11983 4.17657 4.40997 4.46514 4.53259 4.62933 4.70113 4.75128 4.88843 4.92811 5.23169 5.27724 5.40840 5.63193 5.74214 5.84456 6.05536 6.41628 6.78127 7.09062 7.09486 7.39516 8.85589 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.011175 B = 0.006098 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.083470 B = 4590.524851 C = 6268.654378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.036 3.964 3 Si 0.933 3.067 4 H -0.280 1.280 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.532 4.532 8 H 0.045 0.955 9 C 0.240 3.760 10 N -0.582 5.582 11 C 0.166 3.834 12 C -0.153 4.153 13 C -0.065 4.065 14 C -0.177 4.177 15 C 0.085 3.915 16 N -0.520 5.520 17 C 0.124 3.876 18 C 0.538 3.462 19 O -0.547 6.547 20 C -0.040 4.040 21 S -0.219 6.219 22 C -0.098 4.098 23 C -0.077 4.077 24 S -0.235 6.235 25 H 0.267 0.733 26 H 0.063 0.937 27 H 0.022 0.978 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.137 0.863 31 H 0.163 0.837 32 H 0.180 0.820 33 H 0.143 0.857 34 H 0.126 0.874 35 H 0.110 0.890 36 H 0.156 0.844 37 H 0.154 0.846 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.213 -10.218 -4.904 11.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.165 4.165 3 Si 0.760 3.240 4 H -0.206 1.206 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.571 4.571 8 H 0.064 0.936 9 C 0.118 3.882 10 N -0.312 5.312 11 C 0.043 3.957 12 C -0.156 4.156 13 C -0.091 4.091 14 C -0.196 4.196 15 C -0.071 4.071 16 N -0.229 5.229 17 C -0.033 4.033 18 C 0.321 3.679 19 O -0.426 6.426 20 C -0.282 4.282 21 S 0.008 5.992 22 C -0.247 4.247 23 C -0.227 4.227 24 S -0.009 6.009 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.040 0.960 28 H 0.111 0.889 29 H 0.115 0.885 30 H 0.155 0.845 31 H 0.181 0.819 32 H 0.197 0.803 33 H 0.161 0.839 34 H 0.143 0.857 35 H 0.129 0.871 36 H 0.174 0.826 37 H 0.172 0.828 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.728 -9.767 -3.949 10.883 hybrid contribution -0.045 0.844 -0.785 1.153 sum 2.683 -8.923 -4.733 10.451 Atomic orbital electron populations 1.69977 1.06576 1.27831 1.50100 1.25346 0.95304 1.01107 0.94789 0.85993 0.78780 0.80774 0.78489 1.20586 1.20355 1.20257 1.21442 0.92707 0.91268 1.51658 0.93637 1.19577 0.87362 0.82407 0.98819 1.48067 1.44096 1.33927 1.05120 1.20288 0.91841 0.97659 0.85900 1.21197 0.96633 0.97928 0.99823 1.21748 0.92097 0.99813 0.95475 1.22395 1.00253 0.96640 1.00355 1.23252 0.95677 0.94388 0.93826 1.67679 0.99703 1.33075 1.22441 1.22584 0.96351 0.90356 0.93968 1.19499 0.82593 0.81352 0.84429 1.90616 1.32275 1.33866 1.85862 1.25611 0.98565 1.05454 0.98545 1.88372 1.02490 1.86843 1.21503 1.24848 1.03780 1.00961 0.95070 1.24540 0.89694 1.00685 1.07757 1.87155 1.18930 1.55223 1.39620 0.92419 0.92036 0.95958 0.88927 0.88534 0.84537 0.81941 0.80288 0.83915 0.85653 0.87126 0.82607 0.82826 0.87395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.16 13.29 21.45 0.28 -48.88 16 2 C 0.04 1.90 5.46 84.65 0.46 2.36 16 3 Si 0.93 43.39 29.54 68.60 2.03 45.42 16 4 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 7 C -0.53 -27.20 8.36 25.60 0.21 -26.99 16 8 H 0.05 2.45 6.70 -2.91 -0.02 2.43 16 9 C 0.24 11.09 4.87 85.63 0.42 11.51 16 10 N -0.58 -23.75 2.45 -830.53 -2.03 -25.78 16 11 C 0.17 5.92 5.55 85.63 0.48 6.40 16 12 C -0.15 -5.55 5.03 -19.77 -0.10 -5.65 16 13 C -0.06 -2.14 9.72 22.47 0.22 -1.93 16 14 C -0.18 -5.04 10.11 22.36 0.23 -4.81 16 15 C 0.09 2.61 11.18 84.69 0.95 3.56 16 16 N -0.52 -19.77 10.36 -195.85 -2.03 -21.80 16 17 C 0.12 4.83 9.19 84.67 0.78 5.61 16 18 C 0.54 21.87 7.14 87.66 0.63 22.50 16 19 O -0.55 -23.07 14.87 -3.03 -0.05 -23.12 16 20 C -0.04 -1.49 3.13 71.24 0.22 -1.27 16 21 S -0.22 -7.24 19.06 -49.83 -0.95 -8.19 16 22 C -0.10 -1.99 7.04 72.49 0.51 -1.48 16 23 C -0.08 -1.50 6.84 72.49 0.50 -1.00 16 24 S -0.24 -7.27 21.51 -49.83 -1.07 -8.34 16 25 H 0.27 13.89 8.31 -92.70 -0.77 13.12 16 26 H 0.06 2.93 3.91 -17.34 -0.07 2.86 16 27 H 0.02 1.10 7.97 -2.39 -0.02 1.08 16 28 H 0.09 3.07 7.46 -2.39 -0.02 3.06 16 29 H 0.10 3.18 7.90 -2.39 -0.02 3.16 16 30 H 0.14 4.45 7.44 -2.91 -0.02 4.43 16 31 H 0.16 3.39 8.06 -2.91 -0.02 3.37 16 32 H 0.18 4.12 8.06 -2.91 -0.02 4.09 16 33 H 0.14 5.82 8.06 -2.91 -0.02 5.80 16 34 H 0.13 5.16 8.14 -2.39 -0.02 5.14 16 35 H 0.11 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.16 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.15 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -64.42 340.58 2.70 -61.72 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 1.02 Total: 20.16 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: 5.49 Total: 8.81 kcal Atomic # 7 Polarization: -92.68 SS G_CDS: -3.78 Total: -96.46 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.05 Total: -23.12 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: -14.51 SS G_CDS: -2.02 Total: -16.53 kcal Total: -64.42 2.70 -61.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760191379.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.520 kcal (2) G-P(sol) polarization free energy of solvation -64.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds