Wall clock time and date at job start Tue Mar 31 2020 14:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34708 * 117.00047 * 2 1 4 4 O 1.21472 * 120.00302 * 359.97438 * 3 2 1 5 5 C 1.47731 * 119.99804 * 180.02562 * 3 2 1 6 6 C 1.39650 * 120.15174 * 5.67122 * 5 3 2 7 7 C 1.37918 * 119.84781 * 180.31560 * 6 5 3 8 8 C 1.38389 * 120.15089 * 359.66867 * 7 6 5 9 9 C 1.38351 * 120.30296 * 359.97438 * 8 7 6 10 10 C 1.37962 * 120.14913 * 0.04936 * 9 8 7 11 11 C 1.50702 * 120.07872 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47106 * 98.63857 * 11 10 9 13 13 O 1.45199 * 109.47142 * 180.02562 * 12 11 10 14 14 C 1.34223 * 116.99865 * 180.02562 * 13 12 11 15 15 O 1.20827 * 120.00164 * 0.02562 * 14 13 12 16 16 C 1.50706 * 120.00053 * 180.02562 * 14 13 12 17 17 S 1.80998 * 109.47150 * 179.97438 * 16 14 13 18 18 C 1.76205 * 99.99556 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00141 * 359.97438 * 18 17 16 20 20 C 1.38806 * 119.99824 * 180.02562 * 18 17 16 21 21 N 1.31630 * 119.99525 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99854 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47088 * 89.99930 * 22 20 18 24 24 H 1.48506 * 109.46908 * 209.99499 * 22 20 18 25 25 H 1.48496 * 109.47205 * 329.99551 * 22 20 18 26 26 H 1.08995 * 109.46707 * 300.00326 * 1 2 3 27 27 H 1.09001 * 109.47047 * 60.00205 * 1 2 3 28 28 H 1.09002 * 109.47258 * 180.02562 * 1 2 3 29 29 H 1.07999 * 120.07403 * 359.97438 * 6 5 3 30 30 H 1.08003 * 119.92693 * 179.67787 * 7 6 5 31 31 H 1.07998 * 119.85112 * 180.02562 * 8 7 6 32 32 H 1.07996 * 119.92620 * 180.02562 * 9 8 7 33 33 H 1.09000 * 109.47229 * 218.64549 * 11 10 9 34 34 H 1.09004 * 109.46629 * 338.64019 * 11 10 9 35 35 H 1.08999 * 109.46924 * 300.00241 * 12 11 10 36 36 H 1.09005 * 109.46780 * 60.00276 * 12 11 10 37 37 H 1.09000 * 109.46562 * 300.00425 * 16 14 13 38 38 H 1.09001 * 109.47089 * 59.99145 * 16 14 13 39 39 H 0.97004 * 119.99652 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5389 1.2775 -0.0006 6 6 4.3022 0.1142 -0.1204 7 6 5.6791 0.1930 -0.1137 8 6 6.3045 1.4218 0.0046 9 6 5.5544 2.5789 0.1163 10 6 4.1763 2.5146 0.1114 11 6 3.3608 3.7760 0.2338 12 6 2.9013 4.2229 -1.1555 13 8 2.1161 5.4386 -1.0376 14 6 1.6338 5.9650 -2.1742 15 8 1.8598 5.4276 -3.2325 16 6 0.8103 7.2265 -2.1305 17 16 0.3116 7.6800 -3.8102 18 6 -0.6099 9.1431 -3.4711 19 1 -0.7172 9.4901 -2.4541 20 6 -1.1989 9.8490 -4.5111 21 7 -1.0685 9.4256 -5.7506 22 14 -2.1752 11.4004 -4.1517 23 1 -1.2698 12.5766 -4.1964 24 1 -3.2441 11.5596 -5.1703 25 1 -2.7880 11.2983 -2.8029 26 1 -0.3632 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.8154 -0.8454 -0.2127 30 1 6.2707 -0.7064 -0.2011 31 1 7.3830 1.4779 0.0089 32 1 6.0488 3.5347 0.2079 33 1 2.4899 3.5862 0.8611 34 1 3.9695 4.5597 0.6848 35 1 3.7723 4.4127 -1.7826 36 1 2.2926 3.4391 -1.6064 37 1 -0.0771 7.0599 -1.5199 38 1 1.4030 8.0324 -1.6976 39 1 -1.4797 9.9191 -6.4775 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771989586.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:43 Heat of formation + Delta-G solvation = -165.724269 kcal Electronic energy + Delta-G solvation = -23931.473364 eV Core-core repulsion = 20122.967791 eV Total energy + Delta-G solvation = -3808.505574 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.93791 -41.41073 -39.91307 -37.87103 -37.49568 -34.62596 -34.54803 -32.56278 -31.60766 -29.91970 -28.61048 -27.72347 -25.43293 -24.55095 -22.73398 -22.45148 -21.63253 -19.92350 -19.00577 -18.74255 -18.06029 -17.83463 -17.52783 -17.16722 -16.90423 -16.69548 -16.34737 -16.05350 -15.61110 -15.25484 -14.84704 -14.63070 -14.45517 -14.27609 -14.16405 -13.86503 -13.60946 -13.20942 -13.13319 -12.93941 -12.88502 -12.76723 -12.74445 -12.63066 -12.13271 -11.93896 -11.80153 -11.64251 -11.54556 -11.19467 -11.16801 -10.40631 -10.07347 -9.86871 -8.76165 -8.38637 -6.19069 -0.38288 0.27911 1.00905 1.08965 1.40044 1.42754 1.45727 1.54818 1.63883 1.87058 2.22812 2.71825 2.96211 3.24140 3.56892 3.59431 3.78080 3.87286 3.99042 4.03334 4.12702 4.15273 4.25517 4.27774 4.30103 4.37843 4.40326 4.41904 4.64679 4.73619 4.77636 4.86786 5.01775 5.20843 5.27715 5.33231 5.39751 5.44339 5.50899 5.86647 6.17038 6.61770 6.65202 7.02634 8.70870 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.020967 B = 0.002388 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.094950 B =11722.445853 C =12478.731067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.356 6.356 3 C 0.495 3.505 4 O -0.523 6.523 5 C -0.148 4.148 6 C -0.063 4.063 7 C -0.129 4.129 8 C -0.074 4.074 9 C -0.128 4.128 10 C -0.036 4.036 11 C -0.079 4.079 12 C 0.084 3.916 13 O -0.349 6.349 14 C 0.486 3.514 15 O -0.524 6.524 16 C -0.107 4.107 17 S -0.138 6.138 18 C -0.548 4.548 19 H 0.086 0.914 20 C 0.015 3.985 21 N -0.910 5.910 22 Si 1.002 2.998 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.259 1.259 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.137 0.863 29 H 0.151 0.849 30 H 0.164 0.836 31 H 0.164 0.836 32 H 0.153 0.847 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.069 0.931 36 H 0.052 0.948 37 H 0.119 0.881 38 H 0.125 0.875 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.982 -21.210 17.313 30.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.272 6.272 3 C 0.342 3.658 4 O -0.414 6.414 5 C -0.149 4.149 6 C -0.081 4.081 7 C -0.147 4.147 8 C -0.091 4.091 9 C -0.146 4.146 10 C -0.037 4.037 11 C -0.116 4.116 12 C 0.010 3.990 13 O -0.266 6.266 14 C 0.329 3.671 15 O -0.413 6.413 16 C -0.255 4.255 17 S 0.089 5.911 18 C -0.696 4.696 19 H 0.104 0.896 20 C -0.190 4.190 21 N -0.547 5.547 22 Si 0.823 3.177 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.183 1.183 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.155 0.845 29 H 0.169 0.831 30 H 0.182 0.818 31 H 0.182 0.818 32 H 0.170 0.830 33 H 0.110 0.890 34 H 0.119 0.881 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.137 0.863 38 H 0.143 0.857 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.013 -21.629 15.847 30.254 hybrid contribution -1.353 1.378 0.784 2.084 sum 12.660 -20.252 16.631 29.103 Atomic orbital electron populations 1.23543 0.74536 1.05847 1.02314 1.86504 1.24924 1.31824 1.83995 1.21706 0.90016 0.81566 0.72508 1.90869 1.67748 1.36296 1.46518 1.19123 0.88402 0.95810 1.11531 1.21688 0.94862 0.97375 0.94162 1.21610 0.93712 0.99684 0.99669 1.21895 1.02113 0.91582 0.93543 1.21387 0.91415 1.01090 1.00697 1.19773 0.94834 0.92232 0.96858 1.20628 1.00663 0.95060 0.95255 1.22980 0.93682 0.83203 0.99142 1.86437 1.63919 1.41474 1.34738 1.23078 0.77147 0.85205 0.81695 1.90642 1.56536 1.61634 1.32447 1.23088 1.02356 0.95393 1.04673 1.85534 1.67969 1.33718 1.03905 1.23194 1.38270 1.11061 0.97052 0.89588 1.26158 0.96947 1.01943 0.93965 1.70173 1.43580 1.40777 1.00126 0.84900 0.77521 0.76627 0.78605 1.19091 1.20158 1.18260 0.91817 0.92854 0.84474 0.83138 0.81824 0.81825 0.82956 0.88994 0.88058 0.91306 0.92990 0.86328 0.85675 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.57 113.37 1.20 1.70 16 2 O -0.36 -7.34 9.83 -56.18 -0.55 -7.89 16 3 C 0.50 12.33 7.76 70.33 0.55 12.87 16 4 O -0.52 -16.23 11.38 19.93 0.23 -16.01 16 5 C -0.15 -3.04 5.87 -20.10 -0.12 -3.16 16 6 C -0.06 -0.89 9.62 22.53 0.22 -0.68 16 7 C -0.13 -1.22 10.03 22.23 0.22 -0.99 16 8 C -0.07 -0.69 10.04 22.33 0.22 -0.46 16 9 C -0.13 -1.76 9.66 22.23 0.21 -1.55 16 10 C -0.04 -0.73 5.17 -19.60 -0.10 -0.83 16 11 C -0.08 -1.89 4.99 29.85 0.15 -1.74 16 12 C 0.08 2.62 4.98 71.98 0.36 2.98 16 13 O -0.35 -12.61 10.22 -51.35 -0.52 -13.14 16 14 C 0.49 20.68 7.98 71.24 0.57 21.25 16 15 O -0.52 -25.64 15.61 21.96 0.34 -25.30 16 16 C -0.11 -4.62 6.27 71.24 0.45 -4.17 16 17 S -0.14 -7.82 20.58 -56.49 -1.16 -8.98 16 18 C -0.55 -31.62 9.50 67.96 0.65 -30.97 16 19 H 0.09 4.62 7.80 -2.91 -0.02 4.59 16 20 C 0.01 0.85 5.49 84.86 0.47 1.32 16 21 N -0.91 -55.92 13.22 21.65 0.29 -55.64 16 22 Si 1.00 43.79 29.55 68.60 2.03 45.82 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 24 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 25 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 26 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.15 1.67 7.63 -2.91 -0.02 1.65 16 30 H 0.16 0.50 8.06 -2.91 -0.02 0.48 16 31 H 0.16 0.48 8.06 -2.91 -0.02 0.46 16 32 H 0.15 1.51 8.04 -2.91 -0.02 1.48 16 33 H 0.09 2.51 5.96 -2.39 -0.01 2.50 16 34 H 0.10 1.95 8.02 -2.38 -0.02 1.93 16 35 H 0.07 2.05 8.13 -2.39 -0.02 2.03 16 36 H 0.05 1.86 6.56 -2.38 -0.02 1.84 16 37 H 0.12 4.76 8.14 -2.39 -0.02 4.74 16 38 H 0.13 4.84 8.14 -2.40 -0.02 4.82 16 39 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -79.25 356.90 6.75 -72.50 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 1.07 Total: 13.07 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: 5.04 Total: -4.44 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: 0.29 Total: -55.64 kcal Atomic # 8 Polarization: -61.82 SS G_CDS: -0.51 Total: -62.33 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: -7.82 SS G_CDS: -1.16 Total: -8.98 kcal Total: -79.25 6.75 -72.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771989586.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.223 kcal (2) G-P(sol) polarization free energy of solvation -79.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds