Wall clock time and date at job start Tue Mar 31 2020 13:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31295 * 1 3 3 Si 1.86798 * 119.99917 * 2 1 4 4 H 1.48497 * 109.47176 * 239.99832 * 3 2 1 5 5 H 1.48494 * 109.47303 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47185 * 120.00258 * 3 2 1 7 7 C 1.38991 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99982 * 180.02562 * 7 2 1 9 9 N 1.37317 * 120.00304 * 0.02562 * 7 2 1 10 10 C 1.36483 * 126.06751 * 180.28012 * 9 7 2 11 11 C 1.35708 * 107.50652 * 180.15940 * 10 9 7 12 12 N 1.40503 * 126.08924 * 179.84538 * 11 10 9 13 13 C 1.34784 * 119.99888 * 179.71477 * 12 11 10 14 14 O 1.21574 * 120.00085 * 359.72587 * 13 12 11 15 15 C 1.47893 * 119.99815 * 179.97438 * 13 12 11 16 16 C 1.39479 * 119.65868 * 179.97438 * 15 13 12 17 17 C 1.38316 * 119.13024 * 179.97438 * 16 15 13 18 18 C 1.39231 * 118.45054 * 0.02562 * 17 16 15 19 19 O 1.35728 * 120.37982 * 180.02562 * 18 17 16 20 20 C 1.42898 * 116.99720 * 180.02562 * 19 18 17 21 21 F 1.39899 * 109.47062 * 299.99925 * 20 19 18 22 22 F 1.39904 * 109.47545 * 59.99716 * 20 19 18 23 23 C 1.39222 * 119.23530 * 359.97438 * 18 17 16 24 24 N 1.31381 * 120.81143 * 359.74540 * 23 18 17 25 25 C 1.40680 * 107.82379 * 359.57993 * 11 10 9 26 26 N 1.30901 * 108.38453 * 0.26348 * 25 11 10 27 27 H 0.96999 * 120.00124 * 359.97438 * 1 2 3 28 28 H 1.07999 * 126.25153 * 359.97438 * 10 9 7 29 29 H 0.96999 * 120.00067 * 359.71197 * 12 11 10 30 30 H 1.07998 * 120.43735 * 359.96039 * 16 15 13 31 31 H 1.08006 * 120.77270 * 180.02562 * 17 16 15 32 32 H 1.08996 * 109.47113 * 179.97438 * 20 19 18 33 33 H 1.08005 * 119.59102 * 179.97438 * 23 18 17 34 34 H 1.07991 * 125.80362 * 180.27999 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 3.1007 1.6964 -1.2125 5 1 1.2820 2.7464 0.0006 6 1 3.1007 1.6964 1.2125 7 6 2.0079 -1.2037 0.0005 8 1 3.0880 -1.2037 0.0010 9 7 1.3214 -2.3929 0.0005 10 6 1.8750 -3.6404 0.0064 11 6 0.8578 -4.5386 0.0005 12 7 0.9888 -5.9375 0.0005 13 6 -0.1105 -6.7173 0.0001 14 8 -1.2155 -6.2103 0.0047 15 6 0.0275 -8.1898 -0.0005 16 6 -1.1149 -8.9901 -0.0004 17 6 -0.9731 -10.3660 -0.0015 18 6 0.3125 -10.9003 -0.0020 19 8 0.4970 -12.2450 -0.0036 20 6 1.8466 -12.7146 -0.0034 21 9 2.5044 -12.2436 -1.1448 22 9 2.5033 -12.2464 1.1397 23 6 1.4067 -10.0394 -0.0020 24 7 1.2378 -8.7365 -0.0065 25 6 -0.3515 -3.8196 0.0006 26 7 -0.0715 -2.5409 0.0006 27 1 -0.4850 0.8400 0.0004 28 1 2.9302 -3.8708 0.0115 29 1 1.8704 -6.3420 0.0009 30 1 -2.0972 -8.5414 0.0007 31 1 -1.8396 -11.0107 -0.0019 32 1 1.8520 -13.8046 -0.0043 33 1 2.4066 -10.4477 -0.0020 34 1 -1.3421 -4.2496 0.0009 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771996214.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:24 Heat of formation + Delta-G solvation = -49.018442 kcal Electronic energy + Delta-G solvation = -25709.880362 eV Core-core repulsion = 21281.347553 eV Total energy + Delta-G solvation = -4428.532808 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.082 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.87728 -47.86391 -41.01089 -39.82555 -38.90090 -37.82164 -34.29305 -33.23608 -32.61802 -31.11764 -30.17613 -27.87019 -26.81048 -25.13122 -24.32895 -23.59364 -21.25344 -20.64174 -19.63361 -19.41872 -18.89365 -18.44375 -17.93621 -17.16298 -16.63242 -15.98725 -15.47255 -15.46159 -15.14320 -14.88069 -14.72797 -14.42529 -14.17498 -14.16925 -13.88773 -13.71115 -13.45855 -13.33830 -13.18580 -12.86803 -12.79202 -12.31513 -11.66185 -11.41253 -11.22861 -10.96362 -10.54601 -10.17150 -10.14674 -10.06252 -9.31855 -9.15201 -9.01185 -8.80018 -8.04487 -6.66662 -6.54256 -4.20650 0.43314 0.87890 1.94147 2.72203 2.92564 3.01431 3.06320 3.10406 3.48086 3.54239 3.72307 3.85791 3.86611 4.05751 4.08722 4.16641 4.48354 4.52809 4.66905 4.85918 5.04000 5.06161 5.29586 5.41342 5.73021 5.94273 6.28408 6.36882 6.48974 6.90899 6.96713 7.10834 7.24633 7.47923 7.87309 8.20119 8.30138 8.62527 8.84180 9.39037 9.68066 10.41684 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.032046 B = 0.002279 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.543809 B =12283.395834 C =12982.445844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.322 4.322 8 H 0.116 0.884 9 N -0.141 5.141 10 C -0.080 4.080 11 C -0.063 4.063 12 N -0.597 5.597 13 C 0.551 3.449 14 O -0.531 6.531 15 C 0.073 3.927 16 C -0.079 4.079 17 C -0.095 4.095 18 C 0.062 3.938 19 O -0.313 6.313 20 C 0.409 3.591 21 F -0.195 7.195 22 F -0.195 7.195 23 C 0.040 3.960 24 N -0.426 5.426 25 C -0.030 4.030 26 N -0.260 5.260 27 H 0.275 0.725 28 H 0.147 0.853 29 H 0.407 0.593 30 H 0.162 0.838 31 H 0.153 0.847 32 H 0.187 0.813 33 H 0.166 0.834 34 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.393 -24.930 0.000 25.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.454 4.454 8 H 0.134 0.866 9 N 0.092 4.908 10 C -0.231 4.231 11 C -0.169 4.169 12 N -0.238 5.238 13 C 0.335 3.665 14 O -0.408 6.408 15 C -0.066 4.066 16 C -0.099 4.099 17 C -0.122 4.122 18 C 0.016 3.984 19 O -0.230 6.230 20 C 0.319 3.681 21 F -0.177 7.177 22 F -0.177 7.177 23 C -0.121 4.121 24 N -0.138 5.138 25 C -0.206 4.206 26 N -0.091 5.091 27 H 0.086 0.914 28 H 0.165 0.835 29 H 0.242 0.758 30 H 0.180 0.820 31 H 0.171 0.829 32 H 0.203 0.797 33 H 0.183 0.817 34 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 2.539 -22.750 -0.008 22.891 hybrid contribution 0.975 -0.983 0.003 1.385 sum 3.515 -23.733 -0.005 23.991 Atomic orbital electron populations 1.70207 1.06132 1.28116 1.35146 1.25650 0.95717 1.00283 0.95483 0.85885 0.79134 0.79586 0.79485 1.19146 1.20142 1.19151 1.19845 0.91681 0.80538 1.53381 0.86601 1.44553 1.04067 1.03309 1.38916 1.21282 0.96936 0.85275 1.19623 1.17291 0.94459 0.81053 1.24061 1.42326 1.08697 1.04393 1.68343 1.17457 0.84847 0.84208 0.79985 1.90694 1.25584 1.73260 1.51311 1.21385 0.88896 0.95255 1.01060 1.22042 1.01056 0.91985 0.94851 1.20934 0.95033 0.95023 1.01163 1.20179 0.96188 0.82220 0.99795 1.86596 1.27254 1.20858 1.88245 1.23484 0.74936 0.97699 0.71954 1.93129 1.81618 1.90980 1.51990 1.93130 1.81665 1.91067 1.51861 1.23248 0.98313 0.89158 1.01393 1.67525 1.25222 1.12460 1.08555 1.24139 0.98019 0.90744 1.07670 1.78254 0.90109 1.15030 1.25748 0.91390 0.83520 0.75781 0.82031 0.82902 0.79713 0.81709 0.80599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.66 11.81 55.50 0.66 -21.00 16 2 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 3 Si 0.94 19.07 29.55 -169.99 -5.02 14.05 16 4 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.32 -8.62 10.25 -14.82 -0.15 -8.77 16 8 H 0.12 2.76 7.83 -52.48 -0.41 2.35 16 9 N -0.14 -3.94 3.74 -11.41 -0.04 -3.98 16 10 C -0.08 -1.94 11.49 -16.39 -0.19 -2.13 16 11 C -0.06 -1.51 6.90 -83.86 -0.58 -2.08 16 12 N -0.60 -11.73 5.45 -10.84 -0.06 -11.79 16 13 C 0.55 10.47 7.77 -12.30 -0.10 10.38 16 14 O -0.53 -11.49 13.46 5.30 0.07 -11.42 16 15 C 0.07 1.10 6.74 -83.03 -0.56 0.54 16 16 C -0.08 -0.96 9.62 -39.09 -0.38 -1.34 16 17 C -0.10 -0.93 10.12 -39.18 -0.40 -1.33 16 18 C 0.06 0.63 6.51 -38.85 -0.25 0.38 16 19 O -0.31 -2.41 10.43 -18.89 -0.20 -2.60 16 20 C 0.41 2.10 5.98 101.05 0.60 2.70 16 21 F -0.20 -1.40 15.59 2.25 0.04 -1.37 16 22 F -0.20 -1.40 15.60 2.25 0.04 -1.37 16 23 C 0.04 0.47 9.44 -17.38 -0.16 0.30 16 24 N -0.43 -6.03 9.53 -9.68 -0.09 -6.12 16 25 C -0.03 -0.81 10.85 -17.03 -0.18 -0.99 16 26 N -0.26 -7.67 10.39 30.80 0.32 -7.35 16 27 H 0.28 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.15 3.00 8.06 -52.49 -0.42 2.57 16 29 H 0.41 6.90 8.14 -40.82 -0.33 6.56 16 30 H 0.16 1.84 7.63 -52.49 -0.40 1.44 16 31 H 0.15 1.02 8.06 -52.48 -0.42 0.60 16 32 H 0.19 -0.03 8.14 -51.93 -0.42 -0.45 16 33 H 0.17 1.69 5.11 -52.48 -0.27 1.42 16 34 H 0.18 4.61 5.91 -52.49 -0.31 4.30 16 LS Contribution 315.24 15.07 4.75 4.75 Total: -1.00 -34.71 315.24 -4.11 -38.82 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -2.13 Total: 10.62 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -2.44 Total: -1.23 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: 0.78 Total: -50.25 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.13 Total: -14.02 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.07 Total: -2.74 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.05 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.71 -4.11 -38.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771996214.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.195 kcal (2) G-P(sol) polarization free energy of solvation -34.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds