Wall clock time and date at job start Tue Mar 31 2020 13:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86807 * 119.99923 * 2 1 4 4 H 1.48502 * 109.46968 * 269.99901 * 3 2 1 5 5 H 1.48501 * 109.46952 * 30.00149 * 3 2 1 6 6 H 1.48501 * 109.46876 * 150.00124 * 3 2 1 7 7 C 1.39943 * 120.00311 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00558 * 197.86871 * 7 2 1 9 9 C 1.41403 * 119.99389 * 17.86632 * 7 2 1 10 10 C 1.40717 * 120.23880 * 204.38901 * 9 7 2 11 11 C 1.37619 * 119.74023 * 179.97438 * 10 9 7 12 12 C 1.38636 * 120.25322 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.75496 * 179.97438 * 12 11 10 14 14 O 1.45202 * 109.47139 * 89.99722 * 13 12 11 15 15 C 1.34223 * 117.00147 * 179.97438 * 14 13 12 16 16 O 1.20828 * 119.99719 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00070 * 180.27944 * 15 14 13 18 18 H 1.08999 * 110.01387 * 59.02566 * 17 15 14 19 19 C 1.53885 * 110.02621 * 297.64536 * 17 15 14 20 20 C 1.54187 * 108.68574 * 193.57520 * 19 17 15 21 21 S 1.82916 * 105.11587 * 27.83719 * 20 19 17 22 22 O 1.42094 * 109.35535 * 244.51510 * 21 20 19 23 23 O 1.42103 * 109.47391 * 111.34752 * 21 20 19 24 24 C 1.55048 * 110.02745 * 180.40899 * 17 15 14 25 25 C 1.38646 * 120.49747 * 0.27604 * 12 11 10 26 26 C 1.37620 * 120.24711 * 359.44482 * 25 12 11 27 27 H 0.97004 * 120.00170 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.13064 * 359.96315 * 10 9 7 29 29 H 1.07997 * 119.87673 * 180.02562 * 11 10 9 30 30 H 1.08998 * 109.46786 * 329.99913 * 13 12 11 31 31 H 1.09002 * 109.46997 * 210.00147 * 13 12 11 32 32 H 1.08997 * 109.64674 * 313.38098 * 19 17 15 33 33 H 1.09000 * 109.64361 * 73.67620 * 19 17 15 34 34 H 1.09001 * 110.27763 * 268.93719 * 20 19 17 35 35 H 1.09003 * 110.33893 * 146.76636 * 20 19 17 36 36 H 1.09006 * 110.78839 * 279.99153 * 24 17 15 37 37 H 1.09003 * 110.79257 * 43.45173 * 24 17 15 38 38 H 1.07993 * 119.87443 * 179.70348 * 25 12 11 39 39 H 1.07994 * 120.12413 * 180.27600 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0465 -1.4001 5 1 1.4396 2.6527 0.7001 6 1 3.5398 1.4402 0.7000 7 6 2.0080 -1.2119 0.0005 8 1 3.0489 -1.2344 0.2875 9 6 1.3521 -2.4071 -0.3746 10 6 1.8257 -3.6498 0.0852 11 6 1.1791 -4.8066 -0.2859 12 6 0.0656 -4.7508 -1.1099 13 6 -0.6335 -6.0246 -1.5097 14 8 -1.6670 -6.3350 -0.5382 15 6 -2.3885 -7.4467 -0.7502 16 8 -2.1637 -8.1379 -1.7154 17 6 -3.4828 -7.8298 0.2125 18 1 -4.2247 -7.0334 0.2701 19 6 -2.8884 -8.0981 1.6063 20 6 -3.9515 -8.8082 2.4684 21 16 -5.0029 -9.7153 1.2777 22 8 -6.3193 -9.1813 1.3100 23 8 -4.8020 -11.1129 1.4373 24 6 -4.1551 -9.1497 -0.2457 25 6 -0.4060 -3.5324 -1.5739 26 6 0.2213 -2.3625 -1.2110 27 1 -0.4850 0.8401 0.0004 28 1 2.6933 -3.6956 0.7267 29 1 1.5405 -5.7615 0.0661 30 1 0.0891 -6.8399 -1.5447 31 1 -1.0857 -5.8974 -2.4933 32 1 -2.0083 -8.7343 1.5131 33 1 -2.6079 -7.1539 2.0730 34 1 -4.5447 -8.0758 3.0158 35 1 -3.4757 -9.5038 3.1597 36 1 -4.8753 -8.9610 -1.0419 37 1 -3.4063 -9.8752 -0.5638 38 1 -1.2714 -3.5010 -2.2192 39 1 -0.1504 -1.4142 -1.5700 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776112404.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:43 Heat of formation + Delta-G solvation = -144.235530 kcal Electronic energy + Delta-G solvation = -24155.461041 eV Core-core repulsion = 20347.887289 eV Total energy + Delta-G solvation = -3807.573752 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.51741 -37.87997 -37.38815 -36.79993 -36.34231 -35.93547 -33.94794 -30.95596 -30.48345 -29.45495 -27.63915 -26.23640 -23.99690 -22.92695 -21.17329 -20.51336 -20.14164 -19.22184 -18.05278 -17.46990 -17.28867 -16.80505 -16.18530 -15.96244 -15.74128 -15.34715 -14.81386 -14.53168 -14.38935 -13.95739 -13.75031 -13.36494 -12.83826 -12.71538 -12.60494 -12.48971 -12.39915 -12.33966 -12.20102 -12.10377 -11.80424 -11.51307 -11.25996 -11.20271 -11.06874 -10.93125 -10.73577 -10.54766 -10.40932 -10.28516 -9.78264 -9.54549 -9.30204 -7.64932 -7.53877 -6.93954 -4.54135 -0.35760 2.04338 2.16422 2.35943 2.86078 2.93168 2.98545 3.01144 3.16220 3.22201 3.64288 3.79896 3.82001 4.12296 4.19205 4.41294 4.43049 4.49828 4.95223 5.05017 5.16584 5.29485 5.45072 5.51433 5.54562 5.55169 5.59519 5.96555 6.15538 6.22775 6.66266 6.79560 6.90355 7.09942 7.18361 7.43544 7.64953 7.84004 7.88318 7.92310 8.11448 8.46357 8.71038 8.78763 9.99664 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.025965 B = 0.002294 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.096962 B =12200.296268 C =12580.337276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.455 4.455 8 H 0.081 0.919 9 C 0.119 3.881 10 C -0.231 4.231 11 C -0.063 4.063 12 C -0.239 4.239 13 C 0.136 3.864 14 O -0.345 6.345 15 C 0.470 3.530 16 O -0.510 6.510 17 C -0.087 4.087 18 H 0.132 0.868 19 C -0.107 4.107 20 C -0.589 4.589 21 S 2.392 3.608 22 O -0.933 6.933 23 O -0.935 6.935 24 C -0.576 4.576 25 C -0.075 4.075 26 C -0.171 4.171 27 H 0.284 0.716 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.113 0.887 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.150 0.850 38 H 0.089 0.911 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.878 -11.696 2.888 13.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.483 4.483 8 H 0.099 0.901 9 C 0.116 3.884 10 C -0.250 4.250 11 C -0.081 4.081 12 C -0.241 4.241 13 C 0.064 3.936 14 O -0.261 6.261 15 C 0.311 3.689 16 O -0.399 6.399 17 C -0.107 4.107 18 H 0.150 0.850 19 C -0.146 4.146 20 C -0.718 4.718 21 S 2.575 3.425 22 O -0.931 6.931 23 O -0.933 6.933 24 C -0.704 4.704 25 C -0.093 4.093 26 C -0.190 4.190 27 H 0.095 0.905 28 H 0.113 0.887 29 H 0.107 0.893 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.131 0.869 34 H 0.161 0.839 35 H 0.162 0.838 36 H 0.164 0.836 37 H 0.168 0.832 38 H 0.107 0.893 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.764 -12.321 2.746 14.819 hybrid contribution 1.021 1.325 -0.215 1.686 sum -6.743 -10.996 2.531 13.145 Atomic orbital electron populations 1.69819 1.07696 1.29633 1.33626 1.25983 0.94778 1.01603 0.92085 0.86259 0.80509 0.80222 0.79491 1.19108 1.20160 1.18477 1.19708 0.98286 0.91226 1.39125 0.90090 1.17698 0.90776 0.92099 0.87829 1.20965 1.04142 0.92677 1.07221 1.20381 0.95075 0.96624 0.96021 1.18647 1.01376 0.91871 1.12184 1.21803 0.86346 0.96123 0.89322 1.86726 1.45951 1.40319 1.53092 1.22839 0.81660 0.79554 0.84833 1.90648 1.67197 1.52350 1.29682 1.21688 0.96942 0.97756 0.94345 0.84973 1.21874 0.97697 1.04383 0.90602 1.30511 1.13117 1.14004 1.14202 1.09014 0.77134 0.76403 0.79957 1.93637 1.33226 1.80833 1.85363 1.93628 1.86934 1.28136 1.84559 1.30725 1.13843 1.05916 1.19959 1.20540 0.97670 0.92464 0.98673 1.21300 0.99690 0.96681 1.01317 0.90548 0.88692 0.89317 0.91924 0.91873 0.89015 0.86902 0.83877 0.83826 0.83650 0.83222 0.89324 0.86220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.17 10.95 55.55 0.61 -18.56 16 2 C 0.07 1.77 5.14 -17.34 -0.09 1.69 16 3 Si 0.91 17.61 29.60 -169.99 -5.03 12.58 16 4 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 5 H -0.28 -5.23 7.11 56.52 0.40 -4.83 16 6 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 7 C -0.45 -11.41 9.05 -37.74 -0.34 -11.75 16 8 H 0.08 1.95 7.91 -52.49 -0.42 1.53 16 9 C 0.12 3.00 5.58 -106.82 -0.60 2.41 16 10 C -0.23 -5.34 9.80 -38.87 -0.38 -5.72 16 11 C -0.06 -1.32 9.67 -39.66 -0.38 -1.70 16 12 C -0.24 -4.97 5.54 -104.33 -0.58 -5.55 16 13 C 0.14 2.38 5.58 36.00 0.20 2.58 16 14 O -0.34 -5.59 10.18 -39.24 -0.40 -5.98 16 15 C 0.47 6.40 7.25 36.01 0.26 6.66 16 16 O -0.51 -8.07 15.53 -18.75 -0.29 -8.37 16 17 C -0.09 -0.78 3.07 -90.23 -0.28 -1.05 16 18 H 0.13 0.93 8.14 -51.93 -0.42 0.50 16 19 C -0.11 -0.76 5.72 -25.65 -0.15 -0.91 16 20 C -0.59 -3.11 7.26 37.78 0.27 -2.83 16 21 S 2.39 18.25 6.10 -107.50 -0.66 17.60 16 22 O -0.93 -10.24 18.14 -57.73 -1.05 -11.29 16 23 O -0.94 -10.38 18.15 -57.73 -1.05 -11.43 16 24 C -0.58 -4.43 6.20 38.24 0.24 -4.19 16 25 C -0.07 -1.66 9.67 -39.66 -0.38 -2.04 16 26 C -0.17 -4.21 8.70 -38.87 -0.34 -4.54 16 27 H 0.28 6.28 8.30 -40.82 -0.34 5.94 16 28 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 29 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 30 H 0.06 1.03 8.07 -51.93 -0.42 0.61 16 31 H 0.06 1.07 8.07 -51.93 -0.42 0.65 16 32 H 0.09 0.61 8.09 -51.93 -0.42 0.19 16 33 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.14 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.14 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.15 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.15 1.16 7.65 -51.93 -0.40 0.77 16 38 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.12 3.04 6.16 -52.49 -0.32 2.72 16 LS Contribution 347.33 15.07 5.23 5.23 Total: -1.00 -32.92 347.33 -10.08 -43.01 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -4.91 Total: 4.19 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: -2.54 Total: -26.97 kcal Atomic # 7 Polarization: -19.17 SS G_CDS: 0.61 Total: -18.56 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -2.79 Total: -37.07 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.58 kcal Atomic # 16 Polarization: 18.25 SS G_CDS: -0.66 Total: 17.60 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.92 -10.08 -43.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776112404.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.229 kcal (2) G-P(sol) polarization free energy of solvation -32.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds