Wall clock time and date at job start Tue Mar 31 2020 13:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86807 * 119.99923 * 2 1 4 4 H 1.48502 * 109.46968 * 269.99901 * 3 2 1 5 5 H 1.48501 * 109.46952 * 30.00149 * 3 2 1 6 6 H 1.48501 * 109.46876 * 150.00124 * 3 2 1 7 7 C 1.39943 * 120.00311 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00558 * 197.86871 * 7 2 1 9 9 C 1.41403 * 119.99389 * 17.86632 * 7 2 1 10 10 C 1.40717 * 120.23880 * 204.38901 * 9 7 2 11 11 C 1.37619 * 119.74023 * 179.97438 * 10 9 7 12 12 C 1.38636 * 120.25322 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.75496 * 179.97438 * 12 11 10 14 14 O 1.45202 * 109.47139 * 89.99722 * 13 12 11 15 15 C 1.34223 * 117.00147 * 179.97438 * 14 13 12 16 16 O 1.20828 * 119.99719 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00070 * 180.27944 * 15 14 13 18 18 H 1.08999 * 110.01387 * 59.02566 * 17 15 14 19 19 C 1.53885 * 110.02621 * 297.64536 * 17 15 14 20 20 C 1.54187 * 108.68574 * 193.57520 * 19 17 15 21 21 S 1.82916 * 105.11587 * 27.83719 * 20 19 17 22 22 O 1.42094 * 109.35535 * 244.51510 * 21 20 19 23 23 O 1.42103 * 109.47391 * 111.34752 * 21 20 19 24 24 C 1.55048 * 110.02745 * 180.40899 * 17 15 14 25 25 C 1.38646 * 120.49747 * 0.27604 * 12 11 10 26 26 C 1.37620 * 120.24711 * 359.44482 * 25 12 11 27 27 H 0.97004 * 120.00170 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.13064 * 359.96315 * 10 9 7 29 29 H 1.07997 * 119.87673 * 180.02562 * 11 10 9 30 30 H 1.08998 * 109.46786 * 329.99913 * 13 12 11 31 31 H 1.09002 * 109.46997 * 210.00147 * 13 12 11 32 32 H 1.08997 * 109.64674 * 313.38098 * 19 17 15 33 33 H 1.09000 * 109.64361 * 73.67620 * 19 17 15 34 34 H 1.09001 * 110.27763 * 268.93719 * 20 19 17 35 35 H 1.09003 * 110.33893 * 146.76636 * 20 19 17 36 36 H 1.09006 * 110.78839 * 279.99153 * 24 17 15 37 37 H 1.09003 * 110.79257 * 43.45173 * 24 17 15 38 38 H 1.07993 * 119.87443 * 179.70348 * 25 12 11 39 39 H 1.07994 * 120.12413 * 180.27600 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0465 -1.4001 5 1 1.4396 2.6527 0.7001 6 1 3.5398 1.4402 0.7000 7 6 2.0080 -1.2119 0.0005 8 1 3.0489 -1.2344 0.2875 9 6 1.3521 -2.4071 -0.3746 10 6 1.8257 -3.6498 0.0852 11 6 1.1791 -4.8066 -0.2859 12 6 0.0656 -4.7508 -1.1099 13 6 -0.6335 -6.0246 -1.5097 14 8 -1.6670 -6.3350 -0.5382 15 6 -2.3885 -7.4467 -0.7502 16 8 -2.1637 -8.1379 -1.7154 17 6 -3.4828 -7.8298 0.2125 18 1 -4.2247 -7.0334 0.2701 19 6 -2.8884 -8.0981 1.6063 20 6 -3.9515 -8.8082 2.4684 21 16 -5.0029 -9.7153 1.2777 22 8 -6.3193 -9.1813 1.3100 23 8 -4.8020 -11.1129 1.4373 24 6 -4.1551 -9.1497 -0.2457 25 6 -0.4060 -3.5324 -1.5739 26 6 0.2213 -2.3625 -1.2110 27 1 -0.4850 0.8401 0.0004 28 1 2.6933 -3.6956 0.7267 29 1 1.5405 -5.7615 0.0661 30 1 0.0891 -6.8399 -1.5447 31 1 -1.0857 -5.8974 -2.4933 32 1 -2.0083 -8.7343 1.5131 33 1 -2.6079 -7.1539 2.0730 34 1 -4.5447 -8.0758 3.0158 35 1 -3.4757 -9.5038 3.1597 36 1 -4.8753 -8.9610 -1.0419 37 1 -3.4063 -9.8752 -0.5638 38 1 -1.2714 -3.5010 -2.2192 39 1 -0.1504 -1.4142 -1.5700 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776112404.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:42 Heat of formation + Delta-G solvation = -164.878446 kcal Electronic energy + Delta-G solvation = -24156.356185 eV Core-core repulsion = 20347.887289 eV Total energy + Delta-G solvation = -3808.468896 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.65640 -39.52706 -38.13951 -37.85449 -37.17045 -36.84411 -35.68067 -32.60366 -31.23236 -31.10813 -29.13005 -27.20487 -25.45600 -23.77656 -22.94336 -21.87612 -21.43788 -19.87437 -19.26611 -18.98398 -18.03897 -17.91239 -17.31097 -17.07515 -16.78598 -16.52322 -15.91661 -15.61865 -15.49087 -15.35194 -14.95349 -14.54122 -14.16508 -13.90659 -13.83022 -13.54664 -13.49253 -13.29180 -13.25942 -13.11509 -12.93913 -12.86136 -12.69046 -12.58368 -12.14820 -12.07157 -11.89695 -11.71286 -11.60965 -11.41111 -11.32715 -11.26957 -11.04525 -9.43294 -9.32680 -8.68966 -6.39653 -0.97342 0.72635 1.09050 1.12266 1.37618 1.40765 1.52099 1.52863 1.94258 2.19320 2.54862 2.70949 3.02357 3.15548 3.47593 3.57399 3.71148 3.82796 3.97860 4.01371 4.09290 4.12234 4.45035 4.48375 4.54419 4.56519 4.66827 4.82626 4.91062 5.01415 5.01922 5.12206 5.31162 5.39702 5.48588 5.65593 5.89058 6.06245 6.14882 6.32756 6.65063 6.68830 6.88956 6.97619 8.27416 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.025965 B = 0.002294 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.096962 B =12200.296268 C =12580.337276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.036 3.964 3 Si 0.983 3.017 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.257 1.257 7 C -0.493 4.493 8 H 0.079 0.921 9 C 0.087 3.913 10 C -0.245 4.245 11 C -0.063 4.063 12 C -0.230 4.230 13 C 0.140 3.860 14 O -0.354 6.354 15 C 0.470 3.530 16 O -0.533 6.533 17 C -0.087 4.087 18 H 0.155 0.845 19 C -0.110 4.110 20 C -0.563 4.563 21 S 2.410 3.590 22 O -0.969 6.969 23 O -0.973 6.973 24 C -0.574 4.574 25 C -0.081 4.081 26 C -0.195 4.195 27 H 0.290 0.710 28 H 0.102 0.898 29 H 0.120 0.880 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.118 0.882 34 H 0.165 0.835 35 H 0.167 0.833 36 H 0.153 0.847 37 H 0.149 0.851 38 H 0.106 0.894 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.018 -12.355 3.770 14.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.181 1.181 7 C -0.522 4.522 8 H 0.097 0.903 9 C 0.085 3.915 10 C -0.265 4.265 11 C -0.081 4.081 12 C -0.231 4.231 13 C 0.067 3.933 14 O -0.271 6.271 15 C 0.314 3.686 16 O -0.423 6.423 17 C -0.107 4.107 18 H 0.172 0.828 19 C -0.149 4.149 20 C -0.695 4.695 21 S 2.596 3.404 22 O -0.966 6.966 23 O -0.970 6.970 24 C -0.703 4.703 25 C -0.099 4.099 26 C -0.214 4.214 27 H 0.101 0.899 28 H 0.120 0.880 29 H 0.138 0.862 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.116 0.884 33 H 0.136 0.864 34 H 0.183 0.817 35 H 0.185 0.815 36 H 0.172 0.828 37 H 0.167 0.833 38 H 0.124 0.876 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.934 -13.020 3.616 15.670 hybrid contribution 1.014 1.355 -0.517 1.770 sum -6.920 -11.665 3.099 13.912 Atomic orbital electron populations 1.69864 1.09040 1.30842 1.34452 1.26791 0.95497 1.04621 0.91129 0.85187 0.79132 0.75798 0.79537 1.18746 1.19197 1.18106 1.19935 0.98533 0.92444 1.41265 0.90280 1.18045 0.91566 0.93233 0.88665 1.21180 1.04742 0.92875 1.07654 1.20711 0.94685 0.97280 0.95431 1.18979 1.01018 0.92736 1.10354 1.21603 0.87118 0.94875 0.89673 1.86675 1.46014 1.41806 1.52583 1.23621 0.81643 0.78195 0.85187 1.90645 1.67929 1.52770 1.30983 1.21880 0.95773 0.98876 0.94215 0.82760 1.21956 0.98329 1.05043 0.89568 1.30370 1.11829 1.14083 1.13180 1.08354 0.76572 0.75453 0.79974 1.93590 1.35916 1.81121 1.85966 1.93578 1.87402 1.30860 1.85163 1.30721 1.13872 1.05288 1.20440 1.20783 0.97974 0.92408 0.98733 1.21266 1.00610 0.96971 1.02568 0.89886 0.87978 0.86159 0.90552 0.91389 0.88371 0.86389 0.81716 0.81538 0.82844 0.83300 0.87628 0.87933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.01 10.95 21.83 0.24 -40.78 16 2 C 0.04 1.73 5.14 85.26 0.44 2.17 16 3 Si 0.98 36.45 29.60 68.60 2.03 38.48 16 4 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 5 H -0.27 -9.42 7.11 99.48 0.71 -8.71 16 6 H -0.26 -9.28 7.11 99.48 0.71 -8.58 16 7 C -0.49 -25.52 9.05 23.46 0.21 -25.31 16 8 H 0.08 3.93 7.91 -2.91 -0.02 3.91 16 9 C 0.09 4.54 5.58 -21.29 -0.12 4.42 16 10 C -0.25 -11.39 9.80 22.73 0.22 -11.17 16 11 C -0.06 -2.56 9.67 22.22 0.21 -2.35 16 12 C -0.23 -9.21 5.54 -19.67 -0.11 -9.32 16 13 C 0.14 4.58 5.58 71.24 0.40 4.97 16 14 O -0.35 -10.63 10.18 -51.35 -0.52 -11.15 16 15 C 0.47 11.71 7.25 71.24 0.52 12.23 16 16 O -0.53 -15.88 15.53 21.96 0.34 -15.54 16 17 C -0.09 -1.32 3.07 -10.54 -0.03 -1.35 16 18 H 0.15 1.68 8.14 -2.39 -0.02 1.66 16 19 C -0.11 -1.19 5.72 31.29 0.18 -1.01 16 20 C -0.56 -3.87 7.26 72.38 0.53 -3.35 16 21 S 2.41 32.44 6.10 -56.49 -0.34 32.10 16 22 O -0.97 -19.97 18.14 -127.47 -2.31 -22.28 16 23 O -0.97 -20.53 18.15 -127.47 -2.31 -22.84 16 24 C -0.57 -7.73 6.20 72.68 0.45 -7.28 16 25 C -0.08 -3.56 9.67 22.22 0.21 -3.35 16 26 C -0.19 -9.87 8.70 22.73 0.20 -9.67 16 27 H 0.29 13.12 8.30 -92.71 -0.77 12.35 16 28 H 0.10 4.45 8.06 -2.91 -0.02 4.43 16 29 H 0.12 4.08 8.06 -2.91 -0.02 4.06 16 30 H 0.08 2.30 8.07 -2.39 -0.02 2.28 16 31 H 0.07 2.16 8.07 -2.39 -0.02 2.14 16 32 H 0.10 0.97 8.09 -2.39 -0.02 0.95 16 33 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.16 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.17 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.15 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.15 2.08 7.65 -2.39 -0.02 2.06 16 38 H 0.11 4.19 8.06 -2.91 -0.02 4.17 16 39 H 0.10 5.45 6.16 -2.91 -0.02 5.43 16 Total: -1.00 -72.42 347.33 1.49 -70.92 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: 1.07 Total: 21.45 kcal Atomic # 6 Polarization: -53.67 SS G_CDS: 3.31 Total: -50.36 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: 0.24 Total: -40.78 kcal Atomic # 8 Polarization: -67.01 SS G_CDS: -4.81 Total: -71.81 kcal Atomic # 14 Polarization: 36.45 SS G_CDS: 2.03 Total: 38.48 kcal Atomic # 16 Polarization: 32.44 SS G_CDS: -0.34 Total: 32.10 kcal Total: -72.42 1.49 -70.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776112404.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.955 kcal (2) G-P(sol) polarization free energy of solvation -72.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds