Wall clock time and date at job start Tue Mar 31 2020 13:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86802 * 119.99951 * 2 1 4 4 H 1.48497 * 109.47210 * 84.67936 * 3 2 1 5 5 H 1.48500 * 109.47157 * 324.67932 * 3 2 1 6 6 H 1.48504 * 109.46993 * 204.67768 * 3 2 1 7 7 C 1.39948 * 120.00049 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99970 * 20.09886 * 7 2 1 9 9 C 1.41402 * 119.99923 * 200.09959 * 7 2 1 10 10 C 1.40711 * 120.24057 * 25.34816 * 9 7 2 11 11 C 1.37627 * 119.73999 * 179.76434 * 10 9 7 12 12 C 1.38631 * 120.24541 * 0.49184 * 11 10 9 13 13 C 1.50703 * 119.74838 * 179.74379 * 12 11 10 14 14 O 1.45201 * 109.46852 * 270.02196 * 13 12 11 15 15 C 1.34234 * 117.00182 * 179.97438 * 14 13 12 16 16 O 1.20826 * 119.99279 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00013 * 179.97438 * 15 14 13 18 18 H 1.08996 * 109.64304 * 300.43041 * 17 15 14 19 19 C 1.53874 * 109.64533 * 60.72876 * 17 15 14 20 20 C 1.55048 * 106.62371 * 167.03241 * 19 17 15 21 21 S 1.83281 * 102.56523 * 317.56173 * 20 19 17 22 22 O 1.42105 * 109.35600 * 269.81762 * 21 20 19 23 23 O 1.42103 * 109.35359 * 136.61446 * 21 20 19 24 24 C 1.54173 * 109.64294 * 179.97438 * 17 15 14 25 25 C 1.38635 * 120.50435 * 359.75860 * 12 11 10 26 26 C 1.37613 * 120.24630 * 0.02562 * 25 12 11 27 27 H 0.97006 * 120.00158 * 185.10977 * 1 2 3 28 28 H 1.07994 * 120.13347 * 359.97438 * 10 9 7 29 29 H 1.08001 * 119.87639 * 180.23602 * 11 10 9 30 30 H 1.08997 * 109.47383 * 30.01533 * 13 12 11 31 31 H 1.09001 * 109.47345 * 150.02443 * 13 12 11 32 32 H 1.09007 * 110.02501 * 286.31942 * 19 17 15 33 33 H 1.08998 * 110.03395 * 47.73543 * 19 17 15 34 34 H 1.09000 * 110.79103 * 199.29929 * 20 19 17 35 35 H 1.08996 * 110.78918 * 75.83048 * 20 19 17 36 36 H 1.09004 * 110.31910 * 331.14092 * 24 17 15 37 37 H 1.08994 * 110.31725 * 93.34133 * 24 17 15 38 38 H 1.08005 * 119.87690 * 179.97438 * 25 12 11 39 39 H 1.08009 * 120.12734 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3772 2.1114 1.3940 5 1 1.5004 2.6176 -0.8095 6 1 3.5915 1.4103 -0.5846 7 6 2.0079 -1.2120 0.0005 8 1 1.5173 -2.1189 -0.3204 9 6 3.3573 -1.2490 0.4214 10 6 3.8498 -0.2749 1.3094 11 6 5.1637 -0.3236 1.7161 12 6 6.0035 -1.3215 1.2463 13 6 7.4418 -1.3608 1.6945 14 8 8.2551 -0.5790 0.7804 15 6 9.5703 -0.5111 1.0405 16 8 10.0266 -1.0857 2.0004 17 6 10.4775 0.2816 0.1352 18 1 10.4257 -0.1189 -0.8772 19 6 10.0405 1.7569 0.1280 20 6 11.1897 2.5568 -0.5379 21 16 12.6845 1.8027 0.2078 22 8 13.0256 2.5070 1.3940 23 8 13.6628 1.5982 -0.8024 24 6 11.9274 0.1985 0.6527 25 6 5.5305 -2.2833 0.3671 26 6 4.2192 -2.2567 -0.0496 27 1 -0.4851 -0.8367 0.0748 28 1 3.1984 0.5060 1.6730 29 1 5.5429 0.4208 2.4006 30 1 7.5211 -0.9440 2.6985 31 1 7.7924 -2.3929 1.7007 32 1 9.1227 1.8716 -0.4489 33 1 9.8859 2.1055 1.1491 34 1 11.1225 3.6147 -0.2841 35 1 11.1835 2.4158 -1.6187 36 1 11.9361 0.0626 1.7342 37 1 12.4576 -0.6185 0.1634 38 1 6.1937 -3.0560 0.0071 39 1 3.8527 -3.0068 -0.7349 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776112410.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:45 Heat of formation + Delta-G solvation = -168.815859 kcal Electronic energy + Delta-G solvation = -24348.780114 eV Core-core repulsion = 20540.140479 eV Total energy + Delta-G solvation = -3808.639635 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.68582 -39.76781 -38.12560 -37.89215 -37.15530 -36.82841 -35.79610 -33.00249 -31.57624 -31.09033 -29.13870 -27.12042 -25.06900 -23.72300 -23.43167 -21.88163 -21.43631 -20.12936 -19.82074 -19.00930 -18.09514 -17.90883 -17.25347 -17.15265 -16.66741 -16.51806 -16.25504 -15.89920 -15.50280 -15.13353 -15.01721 -14.63085 -14.47417 -14.13919 -13.81248 -13.69263 -13.48046 -13.24641 -13.23949 -13.14976 -13.03842 -13.00723 -12.61139 -12.29063 -12.19001 -12.03751 -11.84934 -11.66452 -11.63246 -11.46845 -11.27139 -11.26034 -10.95792 -9.62959 -9.54236 -9.36687 -6.63460 -0.94908 0.57789 0.85349 1.10331 1.37258 1.45329 1.56107 1.78217 1.90180 2.18588 2.56764 2.58968 3.05554 3.18925 3.43823 3.48546 3.61605 3.78512 4.00917 4.02843 4.04254 4.07805 4.34583 4.42065 4.52331 4.53188 4.64214 4.71413 4.81554 4.93495 5.00417 5.02413 5.08890 5.36294 5.46005 5.48811 5.66400 5.79221 5.95039 6.07320 6.37425 6.59137 6.68665 6.76248 7.91753 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.022078 B = 0.002663 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.932036 B =10510.843562 C =11275.376152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.011 3.989 3 Si 1.105 2.895 4 H -0.258 1.258 5 H -0.282 1.282 6 H -0.256 1.256 7 C -0.544 4.544 8 H 0.049 0.951 9 C 0.083 3.917 10 C -0.262 4.262 11 C -0.049 4.049 12 C -0.223 4.223 13 C 0.136 3.864 14 O -0.351 6.351 15 C 0.466 3.534 16 O -0.535 6.535 17 C -0.076 4.076 18 H 0.164 0.836 19 C -0.120 4.120 20 C -0.555 4.555 21 S 2.403 3.597 22 O -0.977 6.977 23 O -0.971 6.971 24 C -0.584 4.584 25 C -0.051 4.051 26 C -0.235 4.235 27 H 0.280 0.720 28 H 0.104 0.896 29 H 0.128 0.872 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.129 0.871 33 H 0.093 0.907 34 H 0.163 0.837 35 H 0.172 0.828 36 H 0.142 0.858 37 H 0.163 0.837 38 H 0.125 0.875 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.927 5.045 -1.772 21.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.203 4.203 3 Si 0.925 3.075 4 H -0.184 1.184 5 H -0.209 1.209 6 H -0.180 1.180 7 C -0.573 4.573 8 H 0.067 0.933 9 C 0.080 3.920 10 C -0.281 4.281 11 C -0.067 4.067 12 C -0.224 4.224 13 C 0.064 3.936 14 O -0.267 6.267 15 C 0.310 3.690 16 O -0.425 6.425 17 C -0.096 4.096 18 H 0.181 0.819 19 C -0.159 4.159 20 C -0.688 4.688 21 S 2.590 3.410 22 O -0.975 6.975 23 O -0.968 6.968 24 C -0.713 4.713 25 C -0.070 4.070 26 C -0.255 4.255 27 H 0.090 0.910 28 H 0.121 0.879 29 H 0.146 0.854 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.147 0.853 33 H 0.112 0.888 34 H 0.181 0.819 35 H 0.189 0.811 36 H 0.160 0.840 37 H 0.181 0.819 38 H 0.143 0.857 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 21.661 6.762 -1.418 22.736 hybrid contribution -1.470 -2.860 0.239 3.224 sum 20.191 3.902 -1.180 20.599 Atomic orbital electron populations 1.70603 1.08848 1.32417 1.33896 1.28431 0.95714 1.07067 0.89133 0.83213 0.75229 0.70244 0.78764 1.18425 1.20868 1.18032 1.20726 0.97384 0.96876 1.42315 0.93255 1.17984 0.92564 0.92002 0.89430 1.21121 0.97367 1.03974 1.05605 1.20819 0.92560 0.96193 0.97093 1.19044 0.93568 1.01375 1.08371 1.21614 0.85879 0.94908 0.91232 1.86648 1.19256 1.66631 1.54194 1.23805 0.82177 0.78748 0.84305 1.90651 1.76688 1.44877 1.30325 1.21614 0.89108 0.97196 1.01671 0.81883 1.22323 1.00784 0.88569 1.04192 1.30509 1.12738 1.11878 1.13625 1.08536 0.78762 0.78590 0.75114 1.93583 1.83758 1.71407 1.48709 1.93580 1.58522 1.85564 1.59133 1.30602 1.04472 1.23061 1.13199 1.20823 0.94597 0.97132 0.94403 1.21146 0.94529 1.03348 1.06453 0.90960 0.87878 0.85407 0.90567 0.90683 0.85261 0.88843 0.81879 0.81053 0.83991 0.81885 0.85698 0.88336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.82 13.65 21.83 0.30 -44.52 16 2 C 0.01 0.59 5.40 85.26 0.46 1.05 16 3 Si 1.10 46.29 24.83 68.60 1.70 47.99 16 4 H -0.26 -9.94 6.64 99.48 0.66 -9.28 16 5 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 6 H -0.26 -10.44 6.83 99.48 0.68 -9.76 16 7 C -0.54 -29.24 9.44 23.46 0.22 -29.02 16 8 H 0.05 2.82 8.06 -2.91 -0.02 2.79 16 9 C 0.08 4.05 5.20 -21.29 -0.11 3.94 16 10 C -0.26 -11.57 7.21 22.73 0.16 -11.41 16 11 C -0.05 -1.81 9.67 22.22 0.21 -1.60 16 12 C -0.22 -7.75 5.54 -19.67 -0.11 -7.86 16 13 C 0.14 3.82 5.58 71.24 0.40 4.22 16 14 O -0.35 -8.86 10.15 -51.46 -0.52 -9.38 16 15 C 0.47 9.96 7.24 71.23 0.52 10.48 16 16 O -0.54 -14.48 15.18 21.96 0.33 -14.14 16 17 C -0.08 -0.88 3.05 -10.85 -0.03 -0.91 16 18 H 0.16 0.87 8.14 -2.39 -0.02 0.85 16 19 C -0.12 -1.01 5.74 31.59 0.18 -0.83 16 20 C -0.56 -2.70 7.31 72.68 0.53 -2.17 16 21 S 2.40 29.51 6.10 -56.49 -0.34 29.17 16 22 O -0.98 -20.72 18.15 -127.49 -2.31 -23.04 16 23 O -0.97 -18.42 18.15 -127.49 -2.31 -20.73 16 24 C -0.58 -6.62 6.48 72.38 0.47 -6.15 16 25 C -0.05 -1.90 9.67 22.22 0.21 -1.68 16 26 C -0.24 -10.34 9.80 22.73 0.22 -10.12 16 27 H 0.28 14.89 8.73 -92.70 -0.81 14.08 16 28 H 0.10 4.52 4.26 -2.91 -0.01 4.51 16 29 H 0.13 3.93 8.06 -2.91 -0.02 3.91 16 30 H 0.08 2.02 8.07 -2.39 -0.02 2.00 16 31 H 0.07 1.99 8.07 -2.39 -0.02 1.97 16 32 H 0.13 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.09 0.85 8.11 -2.39 -0.02 0.83 16 34 H 0.16 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.17 0.02 8.14 -2.39 -0.02 0.00 16 36 H 0.14 2.08 6.99 -2.39 -0.02 2.06 16 37 H 0.16 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.13 3.82 8.06 -2.91 -0.02 3.79 16 39 H 0.10 4.22 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -74.03 341.28 1.14 -72.89 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 0.96 Total: 13.82 kcal Atomic # 6 Polarization: -55.39 SS G_CDS: 3.34 Total: -52.05 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: 0.30 Total: -44.52 kcal Atomic # 8 Polarization: -62.48 SS G_CDS: -4.82 Total: -67.29 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 1.70 Total: 47.99 kcal Atomic # 16 Polarization: 29.51 SS G_CDS: -0.34 Total: 29.17 kcal Total: -74.03 1.14 -72.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776112410.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.930 kcal (2) G-P(sol) polarization free energy of solvation -74.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds