Wall clock time and date at job start Tue Mar 31 2020 13:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86799 * 120.00275 * 2 1 4 4 H 1.48503 * 109.47019 * 239.99716 * 3 2 1 5 5 H 1.48508 * 109.46968 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47536 * 119.99245 * 3 2 1 7 7 C 1.39939 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00105 * 197.88955 * 7 2 1 9 9 C 1.41441 * 119.99678 * 17.88418 * 7 2 1 10 10 C 1.40788 * 120.17335 * 204.48706 * 9 7 2 11 11 C 1.37727 * 120.05056 * 179.97438 * 10 9 7 12 12 C 1.38356 * 120.41658 * 359.79343 * 11 10 9 13 13 C 1.39931 * 120.35167 * 0.46656 * 12 11 10 14 14 C 1.47769 * 120.03003 * 179.78742 * 13 12 11 15 15 O 1.21469 * 120.00040 * 179.72148 * 14 13 12 16 16 O 1.34713 * 119.99925 * 359.72697 * 14 13 12 17 17 C 1.45195 * 116.99916 * 180.02562 * 16 14 13 18 18 C 1.52999 * 109.47218 * 179.97438 * 17 16 14 19 19 H 1.09000 * 110.01320 * 306.37945 * 18 17 16 20 20 C 1.54013 * 110.02860 * 67.71574 * 18 17 16 21 21 C 1.54166 * 108.63331 * 166.38970 * 20 18 17 22 22 S 1.82923 * 105.17152 * 332.22043 * 21 20 18 23 23 O 1.42095 * 109.35347 * 115.47587 * 22 21 20 24 24 O 1.42098 * 109.35198 * 248.67660 * 22 21 20 25 25 C 1.55044 * 110.02960 * 184.99941 * 18 17 16 26 26 C 1.39083 * 119.93808 * 359.50965 * 13 12 11 27 27 H 0.97003 * 119.99924 * 0.02562 * 1 2 3 28 28 H 1.07998 * 119.97973 * 359.97438 * 10 9 7 29 29 H 1.07995 * 119.79121 * 180.02562 * 11 10 9 30 30 H 1.08001 * 119.82423 * 180.23331 * 12 11 10 31 31 H 1.09002 * 109.47248 * 59.99718 * 17 16 14 32 32 H 1.09004 * 109.47253 * 299.99725 * 17 16 14 33 33 H 1.09003 * 109.62184 * 46.59484 * 20 18 17 34 34 H 1.09004 * 109.74967 * 286.25825 * 20 18 17 35 35 H 1.09005 * 110.31835 * 213.26757 * 21 20 18 36 36 H 1.09001 * 110.32238 * 91.17046 * 21 20 18 37 37 H 1.08996 * 110.79496 * 80.00315 * 25 18 17 38 38 H 1.09005 * 110.78775 * 316.54425 * 25 18 17 39 39 H 1.08003 * 120.20279 * 180.27213 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2773 2.7465 -0.0006 6 1 3.0960 1.6965 1.2126 7 6 2.0080 -1.2119 0.0005 8 1 3.0487 -1.2344 0.2878 9 6 1.3520 -2.4074 -0.3751 10 6 1.8257 -3.6499 0.0874 11 6 1.1846 -4.8123 -0.2795 12 6 0.0710 -4.7693 -1.0994 13 6 -0.4112 -3.5442 -1.5734 14 6 -1.5984 -3.5070 -2.4525 15 8 -2.0195 -2.4428 -2.8595 16 8 -2.2136 -4.6532 -2.8024 17 6 -3.3733 -4.5409 -3.6688 18 6 -3.9327 -5.9358 -3.9556 19 1 -3.1444 -6.5814 -4.3430 20 6 -4.5247 -6.5414 -2.6693 21 6 -5.3732 -7.7713 -3.0491 22 16 -5.9555 -7.4438 -4.7520 23 8 -5.3979 -8.4082 -5.6340 24 8 -7.3594 -7.2246 -4.7355 25 6 -5.0934 -5.8423 -4.9792 26 6 0.2245 -2.3612 -1.2116 27 1 -0.4850 0.8401 -0.0004 28 1 2.6924 -3.6916 0.7304 29 1 1.5513 -5.7631 0.0781 30 1 -0.4265 -5.6865 -1.3781 31 1 -3.0821 -4.0668 -4.6061 32 1 -4.1365 -3.9369 -3.1779 33 1 -5.1529 -5.8022 -2.1721 34 1 -3.7193 -6.8444 -2.0002 35 1 -6.2212 -7.8700 -2.3714 36 1 -4.7630 -8.6742 -3.0249 37 1 -4.7075 -5.7514 -5.9946 38 1 -5.7546 -5.0095 -4.7395 39 1 -0.1467 -1.4130 -1.5714 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778352996.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:20 Heat of formation + Delta-G solvation = -146.492248 kcal Electronic energy + Delta-G solvation = -24321.291268 eV Core-core repulsion = 20513.619657 eV Total energy + Delta-G solvation = -3807.671611 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -39.97868 -37.84099 -37.36716 -37.09169 -36.32237 -35.48767 -33.82760 -31.06927 -30.36413 -29.58964 -27.61021 -25.45183 -24.43823 -23.03738 -21.09616 -20.95894 -19.94672 -19.15733 -17.94543 -17.31324 -17.06352 -16.36652 -16.10438 -15.94915 -15.75875 -15.07726 -14.81127 -14.66864 -14.48619 -14.01368 -13.57284 -13.31030 -13.09867 -12.78083 -12.60950 -12.48312 -12.44574 -12.35888 -12.16414 -11.83372 -11.66533 -11.29076 -11.22678 -11.17018 -11.04572 -10.85104 -10.69397 -10.60056 -10.35088 -10.29372 -9.81786 -9.58338 -9.30552 -7.83475 -7.64216 -6.90578 -4.51522 -0.31184 1.87690 2.13768 2.71462 2.94917 3.01544 3.02914 3.08632 3.27821 3.49599 3.65552 3.84134 3.95280 4.17415 4.27106 4.43872 4.49873 4.54463 4.85211 4.97393 5.15505 5.30099 5.34925 5.38762 5.46073 5.53236 5.70041 5.76831 6.04767 6.30533 6.53736 6.80552 6.85818 6.89180 7.09092 7.22277 7.59163 7.66372 7.82629 8.02049 8.36008 8.42614 8.68883 8.70853 10.04672 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.027412 B = 0.002454 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.216059 B =11407.165407 C =12076.745123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.459 4.459 8 H 0.083 0.917 9 C 0.096 3.904 10 C -0.201 4.201 11 C -0.103 4.103 12 C -0.195 4.195 13 C -0.115 4.115 14 C 0.513 3.487 15 O -0.517 6.517 16 O -0.356 6.356 17 C 0.078 3.922 18 C -0.088 4.088 19 H 0.109 0.891 20 C -0.112 4.112 21 C -0.589 4.589 22 S 2.391 3.609 23 O -0.937 6.937 24 O -0.940 6.940 25 C -0.586 4.586 26 C -0.090 4.090 27 H 0.286 0.714 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.728 -10.240 -5.521 14.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.488 4.488 8 H 0.101 0.899 9 C 0.093 3.907 10 C -0.221 4.221 11 C -0.121 4.121 12 C -0.215 4.215 13 C -0.117 4.117 14 C 0.360 3.640 15 O -0.406 6.406 16 O -0.273 6.273 17 C 0.003 3.997 18 C -0.107 4.107 19 H 0.127 0.873 20 C -0.151 4.151 21 C -0.719 4.719 22 S 2.575 3.425 23 O -0.934 6.934 24 O -0.937 6.937 25 C -0.715 4.715 26 C -0.109 4.109 27 H 0.097 0.903 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.121 0.879 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.123 0.877 35 H 0.157 0.843 36 H 0.157 0.843 37 H 0.161 0.839 38 H 0.160 0.840 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.713 -10.296 -6.258 15.476 hybrid contribution 0.683 1.313 0.515 1.567 sum -9.030 -8.983 -5.743 13.972 Atomic orbital electron populations 1.69764 1.07630 1.29996 1.33670 1.25971 0.94791 1.01645 0.92183 0.86297 0.80108 0.79919 0.80066 1.18675 1.20199 1.18879 1.19555 0.98305 0.90945 1.40015 0.89916 1.17539 0.91126 0.92616 0.89401 1.21196 1.03220 0.92709 1.04996 1.20513 0.96079 0.96925 0.98610 1.20538 1.00254 0.95234 1.05483 1.18815 0.94921 0.95948 1.01997 1.21894 0.83006 0.80763 0.78296 1.90775 1.65126 1.31163 1.53524 1.86571 1.41791 1.36400 1.62575 1.22777 0.87088 0.95253 0.94605 1.21851 0.96669 0.98471 0.93726 0.87286 1.22041 1.00492 0.94346 0.98174 1.30495 1.11236 1.07415 1.22764 1.09002 0.76121 0.78390 0.79035 1.93629 1.80134 1.57454 1.62165 1.93620 1.27874 1.85591 1.86622 1.30719 1.10389 1.22501 1.07915 1.21657 0.96556 0.96013 0.96690 0.90306 0.88318 0.88517 0.87891 0.90625 0.90748 0.89428 0.87702 0.84263 0.84320 0.83929 0.83966 0.84683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.98 10.96 55.55 0.61 -19.37 16 2 C 0.07 1.78 5.14 -17.34 -0.09 1.69 16 3 Si 0.91 18.08 29.59 -169.99 -5.03 13.05 16 4 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.28 -5.40 7.11 56.52 0.40 -4.99 16 6 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.46 -11.58 9.05 -37.73 -0.34 -11.92 16 8 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 9 C 0.10 2.42 5.57 -106.87 -0.60 1.83 16 10 C -0.20 -4.57 9.78 -38.81 -0.38 -4.95 16 11 C -0.10 -2.11 10.01 -39.72 -0.40 -2.51 16 12 C -0.20 -4.03 9.62 -38.90 -0.37 -4.41 16 13 C -0.12 -2.63 5.87 -105.05 -0.62 -3.25 16 14 C 0.51 10.68 7.90 34.63 0.27 10.96 16 15 O -0.52 -11.85 16.12 -19.24 -0.31 -12.16 16 16 O -0.36 -5.80 9.31 -40.53 -0.38 -6.18 16 17 C 0.08 0.95 4.88 37.16 0.18 1.13 16 18 C -0.09 -0.72 2.86 -89.01 -0.25 -0.98 16 19 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 20 C -0.11 -0.82 5.63 -25.59 -0.14 -0.97 16 21 C -0.59 -3.36 7.26 37.77 0.27 -3.09 16 22 S 2.39 18.15 6.11 -107.50 -0.66 17.49 16 23 O -0.94 -10.43 18.14 -57.71 -1.05 -11.48 16 24 O -0.94 -10.42 18.15 -57.71 -1.05 -11.46 16 25 C -0.59 -3.72 6.67 38.24 0.26 -3.46 16 26 C -0.09 -2.28 8.24 -38.43 -0.32 -2.60 16 27 H 0.29 6.68 8.30 -40.82 -0.34 6.34 16 28 H 0.10 2.07 8.06 -52.49 -0.42 1.64 16 29 H 0.10 1.67 8.06 -52.49 -0.42 1.24 16 30 H 0.10 1.85 7.59 -52.49 -0.40 1.46 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.87 8.07 -51.93 -0.42 0.45 16 33 H 0.09 0.59 8.05 -51.93 -0.42 0.17 16 34 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.14 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.14 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.14 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.14 0.73 8.10 -51.93 -0.42 0.31 16 39 H 0.14 3.69 5.74 -52.48 -0.30 3.39 16 LS Contribution 346.89 15.07 5.23 5.23 Total: -1.00 -33.30 346.89 -10.05 -43.35 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -4.89 Total: 4.07 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: -2.53 Total: -22.53 kcal Atomic # 7 Polarization: -19.98 SS G_CDS: 0.61 Total: -19.37 kcal Atomic # 8 Polarization: -38.50 SS G_CDS: -2.78 Total: -41.28 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.05 kcal Atomic # 16 Polarization: 18.15 SS G_CDS: -0.66 Total: 17.49 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.30 -10.05 -43.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778352996.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.141 kcal (2) G-P(sol) polarization free energy of solvation -33.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds