Wall clock time and date at job start Tue Mar 31 2020 13:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86794 * 119.99607 * 2 1 4 4 H 1.48499 * 109.47681 * 274.69287 * 3 2 1 5 5 H 1.48502 * 109.47493 * 34.69649 * 3 2 1 6 6 H 1.48504 * 109.47121 * 154.69322 * 3 2 1 7 7 C 1.39934 * 119.99859 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99739 * 197.72793 * 7 2 1 9 9 C 1.41439 * 120.00305 * 17.73303 * 7 2 1 10 10 C 1.40795 * 120.17455 * 204.35527 * 9 7 2 11 11 C 1.37711 * 120.05008 * 179.97438 * 10 9 7 12 12 C 1.38358 * 120.42165 * 0.02715 * 11 10 9 13 13 C 1.39933 * 120.34934 * 359.97438 * 12 11 10 14 14 C 1.47768 * 120.02880 * 180.02562 * 13 12 11 15 15 O 1.21465 * 119.99985 * 180.02562 * 14 13 12 16 16 O 1.34712 * 120.00146 * 0.02562 * 14 13 12 17 17 C 1.45199 * 116.99870 * 180.02562 * 16 14 13 18 18 C 1.53004 * 109.46820 * 179.97438 * 17 16 14 19 19 H 1.09001 * 110.01119 * 54.29677 * 18 17 16 20 20 C 1.53874 * 110.02880 * 292.91615 * 18 17 16 21 21 C 1.54275 * 108.64637 * 193.51510 * 20 18 17 22 22 S 1.82921 * 105.10434 * 27.89171 * 21 20 18 23 23 O 1.42099 * 109.35016 * 244.48215 * 22 21 20 24 24 O 1.42100 * 109.35389 * 111.27862 * 22 21 20 25 25 C 1.55046 * 110.02665 * 175.67325 * 18 17 16 26 26 C 1.39081 * 119.93973 * 0.27503 * 13 12 11 27 27 H 0.96997 * 120.00644 * 359.97438 * 1 2 3 28 28 H 1.07996 * 119.97169 * 0.02562 * 10 9 7 29 29 H 1.07996 * 119.79119 * 180.02562 * 11 10 9 30 30 H 1.07994 * 119.82760 * 179.97438 * 12 11 10 31 31 H 1.09000 * 109.47346 * 59.99900 * 17 16 14 32 32 H 1.08996 * 109.46743 * 299.99555 * 17 16 14 33 33 H 1.08998 * 109.64900 * 313.33481 * 20 18 17 34 34 H 1.09005 * 109.64181 * 73.62716 * 20 18 17 35 35 H 1.08993 * 110.30851 * 268.98493 * 21 20 18 36 36 H 1.08997 * 110.31173 * 146.80067 * 21 20 18 37 37 H 1.08992 * 110.79326 * 280.04730 * 25 18 17 38 38 H 1.09004 * 110.78683 * 43.31962 * 25 18 17 39 39 H 1.08004 * 120.20898 * 179.71929 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.3905 2.1038 -1.3953 5 1 1.4927 2.6220 0.7970 6 1 3.5858 1.4137 0.5985 7 6 2.0079 -1.2119 -0.0005 8 1 3.0494 -1.2342 0.2843 9 6 1.3512 -2.4075 -0.3741 10 6 1.8276 -3.6501 0.0856 11 6 1.1859 -4.8126 -0.2793 12 6 0.0716 -4.7703 -1.0984 13 6 -0.4166 -3.5448 -1.5653 14 6 -1.6075 -3.5078 -2.4393 15 8 -2.0305 -2.4438 -2.8446 16 8 -2.2240 -4.6541 -2.7866 17 6 -3.3875 -4.5420 -3.6480 18 6 -3.9477 -5.9371 -3.9324 19 1 -4.1435 -6.4586 -2.9954 20 6 -2.9509 -6.7417 -4.7849 21 6 -3.6692 -7.9905 -5.3366 22 16 -5.4316 -7.5144 -5.4524 23 8 -6.1945 -8.3116 -4.5570 24 8 -5.8068 -7.4262 -6.8201 25 6 -5.2533 -5.8262 -4.7612 26 6 0.2232 -2.3620 -1.2101 27 1 -0.4851 0.8400 0.0004 28 1 2.6966 -3.6914 0.7256 29 1 1.5547 -5.7634 0.0761 30 1 -0.4239 -5.6879 -1.3790 31 1 -3.1004 -4.0679 -4.5866 32 1 -4.1485 -3.9383 -3.1538 33 1 -2.5967 -6.1270 -5.6124 34 1 -2.1046 -7.0465 -4.1691 35 1 -3.5481 -8.8299 -4.6521 36 1 -3.2807 -8.2459 -6.3225 37 1 -6.0991 -5.5795 -4.1196 38 1 -5.1451 -5.0888 -5.5567 39 1 -0.1472 -1.4141 -1.5717 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778352997.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:24 Heat of formation + Delta-G solvation = -146.489631 kcal Electronic energy + Delta-G solvation = -24317.475122 eV Core-core repulsion = 20509.803625 eV Total energy + Delta-G solvation = -3807.671497 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -39.98111 -37.84692 -37.36853 -37.09611 -36.32332 -35.48876 -33.82722 -31.06680 -30.36455 -29.59096 -27.61114 -25.45334 -24.44797 -23.04061 -21.09776 -20.95838 -19.94800 -19.15902 -17.94573 -17.31822 -17.06598 -16.36826 -16.10742 -15.94647 -15.76982 -15.06150 -14.81918 -14.67212 -14.49279 -14.01777 -13.56961 -13.31331 -13.08813 -12.78898 -12.61717 -12.48438 -12.44809 -12.36175 -12.18155 -11.75209 -11.73822 -11.28936 -11.23643 -11.18861 -11.05760 -10.82698 -10.69637 -10.59246 -10.35354 -10.28155 -9.80883 -9.58125 -9.32125 -7.83572 -7.64340 -6.90537 -4.51647 -0.31416 1.87540 2.13610 2.70352 2.94787 3.01847 3.05407 3.06953 3.27547 3.49637 3.65244 3.84198 3.94773 4.17540 4.26467 4.43543 4.49732 4.54069 4.84978 4.97189 5.15455 5.30086 5.34176 5.38336 5.46075 5.53337 5.69060 5.76536 6.04615 6.30407 6.53626 6.80449 6.85918 6.89059 7.09076 7.22180 7.59153 7.66317 7.82714 8.01928 8.36319 8.42555 8.68848 8.70931 10.04763 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.027656 B = 0.002448 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.193396 B =11434.622699 C =12117.737958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.459 4.459 8 H 0.083 0.917 9 C 0.095 3.905 10 C -0.201 4.201 11 C -0.103 4.103 12 C -0.195 4.195 13 C -0.115 4.115 14 C 0.513 3.487 15 O -0.516 6.516 16 O -0.356 6.356 17 C 0.078 3.922 18 C -0.088 4.088 19 H 0.109 0.891 20 C -0.112 4.112 21 C -0.589 4.589 22 S 2.391 3.609 23 O -0.936 6.936 24 O -0.940 6.940 25 C -0.586 4.586 26 C -0.090 4.090 27 H 0.285 0.715 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.685 -10.518 -8.261 14.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.488 4.488 8 H 0.101 0.899 9 C 0.093 3.907 10 C -0.221 4.221 11 C -0.121 4.121 12 C -0.215 4.215 13 C -0.117 4.117 14 C 0.360 3.640 15 O -0.406 6.406 16 O -0.273 6.273 17 C 0.003 3.997 18 C -0.107 4.107 19 H 0.127 0.873 20 C -0.150 4.150 21 C -0.719 4.719 22 S 2.575 3.425 23 O -0.934 6.934 24 O -0.937 6.937 25 C -0.716 4.716 26 C -0.109 4.109 27 H 0.096 0.904 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.121 0.879 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.123 0.877 35 H 0.157 0.843 36 H 0.157 0.843 37 H 0.161 0.839 38 H 0.160 0.840 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.864 -10.551 -8.727 15.790 hybrid contribution 0.830 1.298 0.291 1.568 sum -7.034 -9.253 -8.435 14.361 Atomic orbital electron populations 1.69773 1.07624 1.29869 1.33780 1.25975 0.94792 1.01663 0.92197 0.86228 0.80483 0.80344 0.79317 1.19186 1.20153 1.18456 1.19600 0.98272 0.90915 1.39987 0.89864 1.17551 0.91151 0.92630 0.89378 1.21194 1.03146 0.92712 1.05046 1.20510 0.96098 0.96931 0.98589 1.20540 1.00183 0.95222 1.05554 1.18816 0.94753 0.95946 1.02154 1.21893 0.83107 0.80762 0.78201 1.90774 1.65219 1.31170 1.53413 1.86571 1.41537 1.36393 1.62840 1.22776 0.87033 0.95272 0.94633 1.21832 0.91569 0.97420 0.99913 0.87273 1.22033 0.99541 0.92775 1.00684 1.30511 1.22819 1.07543 1.11039 1.08998 0.79002 0.78927 0.75612 1.93632 1.67571 1.66051 1.66103 1.93619 1.81558 1.86145 1.32396 1.30728 1.05507 1.23501 1.11814 1.21660 0.96511 0.96020 0.96728 0.90374 0.88312 0.88516 0.87889 0.90802 0.90574 0.89454 0.87704 0.84311 0.84270 0.83927 0.83967 0.84690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.01 10.96 55.55 0.61 -19.40 16 2 C 0.07 1.77 5.14 -17.34 -0.09 1.68 16 3 Si 0.91 18.09 29.59 -169.99 -5.03 13.06 16 4 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.26 -5.06 7.11 56.52 0.40 -4.65 16 7 C -0.46 -11.57 9.05 -37.73 -0.34 -11.91 16 8 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 9 C 0.10 2.42 5.57 -106.87 -0.60 1.82 16 10 C -0.20 -4.56 9.78 -38.81 -0.38 -4.94 16 11 C -0.10 -2.11 10.01 -39.73 -0.40 -2.51 16 12 C -0.20 -4.03 9.62 -38.90 -0.37 -4.40 16 13 C -0.12 -2.63 5.87 -105.05 -0.62 -3.25 16 14 C 0.51 10.68 7.90 34.63 0.27 10.95 16 15 O -0.52 -11.85 16.12 -19.24 -0.31 -12.16 16 16 O -0.36 -5.80 9.30 -40.52 -0.38 -6.17 16 17 C 0.08 0.95 4.88 37.16 0.18 1.13 16 18 C -0.09 -0.73 2.86 -89.08 -0.25 -0.98 16 19 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 20 C -0.11 -0.80 5.61 -25.61 -0.14 -0.94 16 21 C -0.59 -3.30 7.26 37.82 0.27 -3.02 16 22 S 2.39 18.08 6.11 -107.50 -0.66 17.42 16 23 O -0.94 -10.46 18.15 -57.71 -1.05 -11.50 16 24 O -0.94 -10.36 18.15 -57.71 -1.05 -11.40 16 25 C -0.59 -3.73 6.67 38.24 0.26 -3.47 16 26 C -0.09 -2.28 8.24 -38.43 -0.32 -2.60 16 27 H 0.29 6.65 8.30 -40.82 -0.34 6.32 16 28 H 0.10 2.07 8.06 -52.49 -0.42 1.64 16 29 H 0.10 1.67 8.06 -52.49 -0.42 1.24 16 30 H 0.10 1.85 7.59 -52.49 -0.40 1.46 16 31 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.09 0.56 8.05 -51.93 -0.42 0.14 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.14 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.14 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.14 0.72 8.10 -51.93 -0.42 0.30 16 39 H 0.14 3.69 5.74 -52.48 -0.30 3.39 16 LS Contribution 346.88 15.07 5.23 5.23 Total: -1.00 -33.37 346.88 -10.05 -43.41 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -4.89 Total: 3.97 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: -2.52 Total: -22.44 kcal Atomic # 7 Polarization: -20.01 SS G_CDS: 0.61 Total: -19.40 kcal Atomic # 8 Polarization: -38.46 SS G_CDS: -2.78 Total: -41.24 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Atomic # 16 Polarization: 18.08 SS G_CDS: -0.66 Total: 17.42 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.37 -10.05 -43.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778352997.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.076 kcal (2) G-P(sol) polarization free energy of solvation -33.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds