Wall clock time and date at job start Tue Mar 31 2020 13:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86794 * 119.99607 * 2 1 4 4 H 1.48499 * 109.47681 * 274.69287 * 3 2 1 5 5 H 1.48502 * 109.47493 * 34.69649 * 3 2 1 6 6 H 1.48504 * 109.47121 * 154.69322 * 3 2 1 7 7 C 1.39934 * 119.99859 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99739 * 197.72793 * 7 2 1 9 9 C 1.41439 * 120.00305 * 17.73303 * 7 2 1 10 10 C 1.40795 * 120.17455 * 204.35527 * 9 7 2 11 11 C 1.37711 * 120.05008 * 179.97438 * 10 9 7 12 12 C 1.38358 * 120.42165 * 0.02715 * 11 10 9 13 13 C 1.39933 * 120.34934 * 359.97438 * 12 11 10 14 14 C 1.47768 * 120.02880 * 180.02562 * 13 12 11 15 15 O 1.21465 * 119.99985 * 180.02562 * 14 13 12 16 16 O 1.34712 * 120.00146 * 0.02562 * 14 13 12 17 17 C 1.45199 * 116.99870 * 180.02562 * 16 14 13 18 18 C 1.53004 * 109.46820 * 179.97438 * 17 16 14 19 19 H 1.09001 * 110.01119 * 54.29677 * 18 17 16 20 20 C 1.53874 * 110.02880 * 292.91615 * 18 17 16 21 21 C 1.54275 * 108.64637 * 193.51510 * 20 18 17 22 22 S 1.82921 * 105.10434 * 27.89171 * 21 20 18 23 23 O 1.42099 * 109.35016 * 244.48215 * 22 21 20 24 24 O 1.42100 * 109.35389 * 111.27862 * 22 21 20 25 25 C 1.55046 * 110.02665 * 175.67325 * 18 17 16 26 26 C 1.39081 * 119.93973 * 0.27503 * 13 12 11 27 27 H 0.96997 * 120.00644 * 359.97438 * 1 2 3 28 28 H 1.07996 * 119.97169 * 0.02562 * 10 9 7 29 29 H 1.07996 * 119.79119 * 180.02562 * 11 10 9 30 30 H 1.07994 * 119.82760 * 179.97438 * 12 11 10 31 31 H 1.09000 * 109.47346 * 59.99900 * 17 16 14 32 32 H 1.08996 * 109.46743 * 299.99555 * 17 16 14 33 33 H 1.08998 * 109.64900 * 313.33481 * 20 18 17 34 34 H 1.09005 * 109.64181 * 73.62716 * 20 18 17 35 35 H 1.08993 * 110.30851 * 268.98493 * 21 20 18 36 36 H 1.08997 * 110.31173 * 146.80067 * 21 20 18 37 37 H 1.08992 * 110.79326 * 280.04730 * 25 18 17 38 38 H 1.09004 * 110.78683 * 43.31962 * 25 18 17 39 39 H 1.08004 * 120.20898 * 179.71929 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.3905 2.1038 -1.3953 5 1 1.4927 2.6220 0.7970 6 1 3.5858 1.4137 0.5985 7 6 2.0079 -1.2119 -0.0005 8 1 3.0494 -1.2342 0.2843 9 6 1.3512 -2.4075 -0.3741 10 6 1.8276 -3.6501 0.0856 11 6 1.1859 -4.8126 -0.2793 12 6 0.0716 -4.7703 -1.0984 13 6 -0.4166 -3.5448 -1.5653 14 6 -1.6075 -3.5078 -2.4393 15 8 -2.0305 -2.4438 -2.8446 16 8 -2.2240 -4.6541 -2.7866 17 6 -3.3875 -4.5420 -3.6480 18 6 -3.9477 -5.9371 -3.9324 19 1 -4.1435 -6.4586 -2.9954 20 6 -2.9509 -6.7417 -4.7849 21 6 -3.6692 -7.9905 -5.3366 22 16 -5.4316 -7.5144 -5.4524 23 8 -6.1945 -8.3116 -4.5570 24 8 -5.8068 -7.4262 -6.8201 25 6 -5.2533 -5.8262 -4.7612 26 6 0.2232 -2.3620 -1.2101 27 1 -0.4851 0.8400 0.0004 28 1 2.6966 -3.6914 0.7256 29 1 1.5547 -5.7634 0.0761 30 1 -0.4239 -5.6879 -1.3790 31 1 -3.1004 -4.0679 -4.5866 32 1 -4.1485 -3.9383 -3.1538 33 1 -2.5967 -6.1270 -5.6124 34 1 -2.1046 -7.0465 -4.1691 35 1 -3.5481 -8.8299 -4.6521 36 1 -3.2807 -8.2459 -6.3225 37 1 -6.0991 -5.5795 -4.1196 38 1 -5.1451 -5.0888 -5.5567 39 1 -0.1472 -1.4141 -1.5717 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778352997.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:23 Heat of formation + Delta-G solvation = -167.937761 kcal Electronic energy + Delta-G solvation = -24318.405183 eV Core-core repulsion = 20509.803625 eV Total energy + Delta-G solvation = -3808.601558 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.47235 -39.29029 -38.32966 -38.07411 -37.09805 -36.73528 -35.60582 -32.31849 -31.50334 -31.32320 -28.51313 -27.22880 -25.30977 -24.43079 -22.84128 -21.68371 -21.54035 -19.83849 -19.60354 -18.35885 -17.88047 -17.84725 -17.28740 -17.19198 -16.62747 -16.58530 -16.40631 -15.53291 -15.21381 -15.14989 -15.07199 -14.65062 -14.38039 -14.24265 -13.87850 -13.49580 -13.25894 -13.15827 -13.09759 -13.00742 -12.85185 -12.83342 -12.59212 -12.53595 -12.20691 -12.04177 -11.91356 -11.78593 -11.55410 -11.52885 -11.30798 -11.17254 -11.10145 -9.60491 -9.43196 -8.68922 -6.39595 -0.91158 0.14661 0.97594 1.37951 1.46379 1.47168 1.52016 1.76856 1.81818 2.18867 2.64416 2.72593 3.04784 3.30906 3.51242 3.58300 3.64113 3.88263 4.01893 4.03574 4.19110 4.25883 4.41722 4.47669 4.65294 4.68123 4.68608 4.84233 4.89294 5.04426 5.07339 5.13827 5.15188 5.28333 5.30523 5.46108 5.83012 5.90736 6.02233 6.24498 6.53955 6.82392 6.87495 6.89825 8.28519 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.027656 B = 0.002448 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.193396 B =11434.622699 C =12117.737958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.031 3.969 3 Si 0.982 3.018 4 H -0.266 1.266 5 H -0.270 1.270 6 H -0.251 1.251 7 C -0.494 4.494 8 H 0.086 0.914 9 C 0.064 3.936 10 C -0.204 4.204 11 C -0.100 4.100 12 C -0.177 4.177 13 C -0.129 4.129 14 C 0.518 3.482 15 O -0.547 6.547 16 O -0.344 6.344 17 C 0.068 3.932 18 C -0.086 4.086 19 H 0.119 0.881 20 C -0.117 4.117 21 C -0.567 4.567 22 S 2.402 3.598 23 O -0.976 6.976 24 O -0.978 6.978 25 C -0.577 4.577 26 C -0.125 4.125 27 H 0.287 0.713 28 H 0.113 0.887 29 H 0.141 0.859 30 H 0.139 0.861 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.155 0.845 36 H 0.159 0.841 37 H 0.156 0.844 38 H 0.157 0.843 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.078 -12.381 -8.497 16.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.184 4.184 3 Si 0.803 3.197 4 H -0.191 1.191 5 H -0.195 1.195 6 H -0.174 1.174 7 C -0.524 4.524 8 H 0.104 0.896 9 C 0.062 3.938 10 C -0.224 4.224 11 C -0.118 4.118 12 C -0.196 4.196 13 C -0.130 4.130 14 C 0.366 3.634 15 O -0.439 6.439 16 O -0.260 6.260 17 C -0.007 4.007 18 C -0.106 4.106 19 H 0.137 0.863 20 C -0.156 4.156 21 C -0.699 4.699 22 S 2.590 3.410 23 O -0.973 6.973 24 O -0.975 6.975 25 C -0.707 4.707 26 C -0.145 4.145 27 H 0.098 0.902 28 H 0.131 0.869 29 H 0.159 0.841 30 H 0.156 0.844 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.114 0.886 34 H 0.124 0.876 35 H 0.173 0.827 36 H 0.177 0.823 37 H 0.174 0.826 38 H 0.175 0.825 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.287 -12.465 -8.971 16.999 hybrid contribution 0.603 1.674 0.332 1.810 sum -6.684 -10.792 -8.638 15.354 Atomic orbital electron populations 1.69863 1.09190 1.30701 1.35434 1.26827 0.95413 1.04904 0.91289 0.85178 0.79379 0.75909 0.79220 1.19130 1.19490 1.17437 1.19867 0.98636 0.92021 1.41844 0.89594 1.17903 0.91783 0.94021 0.90064 1.21506 1.03515 0.92649 1.04726 1.20974 0.95350 0.97945 0.97514 1.20991 0.99547 0.95483 1.03603 1.19091 0.95441 0.96052 1.02457 1.21603 0.82796 0.81358 0.77688 1.90756 1.66024 1.32604 1.54511 1.86517 1.42596 1.33777 1.63132 1.23204 0.85409 0.98057 0.94037 1.21864 0.92382 0.95223 1.01093 0.86320 1.22104 0.99249 0.93333 1.00900 1.30368 1.19503 1.07434 1.12622 1.08472 0.79662 0.78754 0.74107 1.93580 1.69665 1.67401 1.66677 1.93570 1.82951 1.86732 1.34280 1.30678 1.05079 1.22813 1.12117 1.21466 0.98170 0.96004 0.98815 0.90195 0.86915 0.84138 0.84354 0.90148 0.90815 0.88579 0.87644 0.82659 0.82315 0.82621 0.82478 0.87745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.15 10.96 21.82 0.24 -43.91 16 2 C 0.03 1.54 5.14 85.25 0.44 1.97 16 3 Si 0.98 38.01 29.59 68.60 2.03 40.04 16 4 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 5 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 6 H -0.25 -9.20 7.11 99.48 0.71 -8.49 16 7 C -0.49 -25.76 9.05 23.47 0.21 -25.55 16 8 H 0.09 4.22 7.91 -2.91 -0.02 4.20 16 9 C 0.06 3.35 5.57 -21.32 -0.12 3.23 16 10 C -0.20 -9.07 9.78 22.77 0.22 -8.84 16 11 C -0.10 -3.78 10.01 22.17 0.22 -3.56 16 12 C -0.18 -6.81 9.62 22.71 0.22 -6.59 16 13 C -0.13 -5.86 5.87 -20.14 -0.12 -5.98 16 14 C 0.52 21.42 7.90 70.34 0.56 21.97 16 15 O -0.55 -25.68 16.12 19.95 0.32 -25.36 16 16 O -0.34 -10.53 9.30 -56.21 -0.52 -11.05 16 17 C 0.07 1.51 4.88 71.98 0.35 1.86 16 18 C -0.09 -1.19 2.86 -9.80 -0.03 -1.21 16 19 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 20 C -0.12 -1.29 5.61 31.32 0.18 -1.11 16 21 C -0.57 -4.48 7.26 72.41 0.53 -3.95 16 22 S 2.40 32.28 6.11 -56.49 -0.34 31.94 16 23 O -0.98 -20.76 18.15 -127.49 -2.31 -23.08 16 24 O -0.98 -20.57 18.15 -127.49 -2.31 -22.88 16 25 C -0.58 -6.02 6.67 72.68 0.48 -5.53 16 26 C -0.12 -6.58 8.24 23.02 0.19 -6.39 16 27 H 0.29 14.11 8.30 -92.71 -0.77 13.34 16 28 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 29 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 30 H 0.14 4.33 7.59 -2.91 -0.02 4.31 16 31 H 0.08 1.71 8.08 -2.39 -0.02 1.69 16 32 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.10 0.92 8.05 -2.39 -0.02 0.90 16 34 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.16 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.16 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.16 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.16 1.22 8.10 -2.38 -0.02 1.20 16 39 H 0.10 6.09 5.74 -2.91 -0.02 6.07 16 Total: -1.00 -75.33 346.88 1.50 -73.83 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 1.07 Total: 20.15 kcal Atomic # 6 Polarization: -43.02 SS G_CDS: 3.33 Total: -39.69 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.24 Total: -43.91 kcal Atomic # 8 Polarization: -77.54 SS G_CDS: -4.83 Total: -82.37 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 2.03 Total: 40.04 kcal Atomic # 16 Polarization: 32.28 SS G_CDS: -0.34 Total: 31.94 kcal Total: -75.33 1.50 -73.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778352997.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.105 kcal (2) G-P(sol) polarization free energy of solvation -75.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds