Wall clock time and date at job start Tue Mar 31 2020 13:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86796 * 120.00485 * 2 1 4 4 H 1.48503 * 109.47259 * 270.00667 * 3 2 1 5 5 H 1.48503 * 109.47079 * 29.99916 * 3 2 1 6 6 H 1.48500 * 109.47583 * 150.00310 * 3 2 1 7 7 C 1.37885 * 119.99666 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99551 * 179.97438 * 7 2 1 9 9 C 1.50690 * 120.00260 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47649 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00381 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00065 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99693 * 179.97438 * 11 10 9 14 14 O 1.45199 * 109.46821 * 179.97438 * 13 11 10 15 15 C 1.34706 * 117.00217 * 180.02562 * 14 13 11 16 16 O 1.21477 * 119.99835 * 0.02562 * 15 14 13 17 17 C 1.47742 * 120.00581 * 180.02562 * 15 14 13 18 18 C 1.39585 * 120.11682 * 0.02562 * 17 15 14 19 19 C 1.38439 * 119.78334 * 179.97438 * 18 17 15 20 20 O 1.35909 * 119.98167 * 179.97438 * 19 18 17 21 21 C 1.38862 * 120.04195 * 359.97438 * 19 18 17 22 22 C 1.38258 * 120.24449 * 0.03791 * 21 19 18 23 23 N 1.48018 * 119.89270 * 179.97438 * 22 21 19 24 24 O 1.21799 * 119.99794 * 179.97438 * 23 22 21 25 25 O 1.21797 * 119.99787 * 359.97438 * 23 22 21 26 26 C 1.37995 * 120.21432 * 359.96496 * 22 21 19 27 27 H 0.97006 * 119.99743 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47191 * 59.99782 * 9 7 2 29 29 H 1.09000 * 109.47283 * 300.00092 * 9 7 2 30 30 H 0.97000 * 119.99372 * 359.97438 * 10 9 7 31 31 H 1.09001 * 109.47053 * 60.00487 * 13 11 10 32 32 H 1.09000 * 109.47565 * 299.99796 * 13 11 10 33 33 H 1.07991 * 120.10681 * 359.70001 * 18 17 15 34 34 H 0.96696 * 114.00594 * 90.00165 * 20 19 18 35 35 H 1.07993 * 119.87993 * 180.02562 * 21 19 18 36 36 H 1.07999 * 120.01905 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2028 -3.6128 -0.0005 11 6 1.7535 -4.8834 -0.0011 12 8 0.5611 -5.1050 -0.0011 13 6 2.7329 -6.0289 -0.0016 14 8 2.0068 -7.2863 -0.0015 15 6 2.7404 -8.4161 -0.0015 16 8 3.9535 -8.3526 -0.0010 17 6 2.0697 -9.7325 -0.0019 18 6 0.6759 -9.8084 -0.0029 19 6 0.0546 -11.0456 -0.0039 20 8 -1.3022 -11.1242 -0.0044 21 6 0.8169 -12.2063 -0.0044 22 6 2.1975 -12.1328 -0.0031 23 7 3.0024 -13.3750 -0.0030 24 8 4.2188 -13.3124 -0.0024 25 8 2.4483 -14.4596 -0.0036 26 6 2.8275 -10.9050 -0.0021 27 1 -0.4850 0.8401 0.0004 28 1 0.6239 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8897 30 1 3.1565 -3.4355 -0.0009 31 1 3.3595 -5.9715 0.8884 32 1 3.3595 -5.9708 -0.8916 33 1 0.0842 -8.9051 0.0015 34 1 -1.6946 -11.1465 -0.8878 35 1 0.3295 -13.1700 -0.0055 36 1 3.9062 -10.8513 -0.0015 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000780067263.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:50 Heat of formation + Delta-G solvation = -134.825263 kcal Electronic energy + Delta-G solvation = -25483.843744 eV Core-core repulsion = 21130.384837 eV Total energy + Delta-G solvation = -4353.458907 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.093 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.68065 -41.23182 -40.17482 -38.88969 -37.56904 -37.00023 -36.63074 -34.38079 -32.99137 -32.50464 -31.06167 -29.44294 -27.21531 -26.90677 -25.13802 -23.13451 -22.72939 -21.74005 -20.19512 -20.03909 -19.15271 -18.26806 -17.98937 -17.93506 -17.71323 -17.23174 -16.95356 -16.48614 -16.32575 -15.66014 -15.51007 -15.18678 -14.87665 -14.40335 -13.60864 -13.44827 -13.39820 -13.07544 -12.93554 -12.66177 -12.10612 -12.08655 -11.94186 -11.92032 -11.64550 -11.56151 -11.10825 -11.05791 -11.03712 -10.93463 -10.41772 -10.37135 -9.86743 -9.52792 -9.35333 -8.86913 -8.11331 -6.27175 -4.34962 -0.79459 -0.26170 0.67500 0.77321 1.75434 1.94897 2.63726 3.00765 3.12477 3.17985 3.24556 3.26600 3.56432 3.85674 3.95565 4.05680 4.12286 4.26661 4.35848 4.52312 4.86078 4.95107 5.02695 5.09637 5.13488 5.16980 5.25031 5.36472 5.85234 5.89938 6.78310 7.09493 7.14079 7.15764 7.23442 7.35356 7.51761 7.83244 8.36872 8.59913 8.83218 9.31714 10.82851 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.029496 B = 0.002006 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.063299 B =13952.506770 C =14878.587932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.547 4.547 8 H 0.065 0.935 9 C 0.251 3.749 10 N -0.704 5.704 11 C 0.500 3.500 12 O -0.535 6.535 13 C 0.050 3.950 14 O -0.321 6.321 15 C 0.511 3.489 16 O -0.491 6.491 17 C -0.099 4.099 18 C -0.035 4.035 19 C 0.108 3.892 20 O -0.479 6.479 21 C -0.055 4.055 22 C -0.040 4.040 23 N 0.029 4.971 24 O -0.147 6.147 25 O -0.152 6.152 26 C -0.003 4.003 27 H 0.267 0.733 28 H 0.030 0.970 29 H 0.030 0.970 30 H 0.394 0.606 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.173 0.827 34 H 0.404 0.596 35 H 0.167 0.833 36 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.579 -23.330 -1.731 23.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.585 4.585 8 H 0.083 0.917 9 C 0.131 3.869 10 N -0.354 5.354 11 C 0.283 3.717 12 O -0.412 6.412 13 C -0.028 4.028 14 O -0.235 6.235 15 C 0.354 3.646 16 O -0.379 6.379 17 C -0.101 4.101 18 C -0.053 4.053 19 C 0.062 3.938 20 O -0.290 6.290 21 C -0.075 4.075 22 C -0.123 4.123 23 N 0.550 4.450 24 O -0.365 6.365 25 O -0.369 6.369 26 C -0.023 4.023 27 H 0.077 0.923 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.227 0.773 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.190 0.810 34 H 0.262 0.738 35 H 0.184 0.816 36 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 1.541 -22.655 -1.123 22.735 hybrid contribution 1.113 0.764 -0.479 1.433 sum 2.655 -21.891 -1.603 22.110 Atomic orbital electron populations 1.69965 1.06133 1.27503 1.48512 1.24956 0.94952 0.99546 0.94529 0.86378 0.79607 0.82428 0.78289 1.20397 1.20945 1.19694 1.21194 0.93349 0.90247 1.53744 0.91725 1.19197 0.88120 0.81473 0.98082 1.46380 1.11663 1.05273 1.72087 1.19810 0.89026 0.83968 0.78938 1.90712 1.16237 1.84528 1.49768 1.23009 0.94520 0.80088 1.05147 1.86557 1.39823 1.13914 1.83223 1.20635 0.85518 0.84742 0.73678 1.90905 1.14288 1.87805 1.44934 1.18735 0.92982 0.90448 1.07905 1.22465 0.93859 0.99865 0.89147 1.17920 0.84463 0.90229 1.01213 1.84924 1.13914 1.95673 1.34519 1.21565 0.90963 1.01765 0.93168 1.20605 0.91268 0.84885 1.15502 1.43436 1.01434 1.02274 0.97818 1.94596 0.95142 1.93876 1.52863 1.94562 1.74267 1.14895 1.53139 1.21059 1.03214 0.88175 0.89815 0.92311 0.95193 0.95183 0.77308 0.87982 0.87979 0.80977 0.73833 0.81553 0.80999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.11 13.29 55.43 0.74 -24.37 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.91 20.13 29.54 -169.99 -5.02 15.11 16 4 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.55 -14.13 9.28 -34.44 -0.32 -14.45 16 8 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 9 C 0.25 6.26 5.43 -5.20 -0.03 6.23 16 10 N -0.70 -13.50 5.55 -61.48 -0.34 -13.84 16 11 C 0.50 9.06 7.91 -10.99 -0.09 8.98 16 12 O -0.53 -11.94 16.50 -14.11 -0.23 -12.17 16 13 C 0.05 0.65 5.95 36.01 0.21 0.86 16 14 O -0.32 -4.22 9.01 -47.19 -0.42 -4.64 16 15 C 0.51 5.86 7.90 34.61 0.27 6.14 16 16 O -0.49 -6.42 16.13 -19.25 -0.31 -6.73 16 17 C -0.10 -0.88 5.87 -105.00 -0.62 -1.50 16 18 C -0.03 -0.26 9.56 -39.01 -0.37 -0.64 16 19 C 0.11 0.68 6.70 -39.28 -0.26 0.42 16 20 O -0.48 -2.54 13.50 -19.45 -0.26 -2.80 16 21 C -0.06 -0.36 9.49 -39.34 -0.37 -0.73 16 22 C -0.04 -0.33 6.84 -80.03 -0.55 -0.88 16 23 N 0.03 0.30 4.45 33.92 0.15 0.45 16 24 O -0.15 -1.68 18.44 -29.46 -0.54 -2.22 16 25 O -0.15 -1.62 18.43 -29.46 -0.54 -2.17 16 26 C 0.00 -0.03 9.10 -39.16 -0.36 -0.39 16 27 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.39 6.27 8.32 -40.82 -0.34 5.93 16 31 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.17 1.34 7.61 -52.49 -0.40 0.94 16 34 H 0.40 0.16 9.06 45.56 0.41 0.57 16 35 H 0.17 0.83 7.59 -52.49 -0.40 0.43 16 36 H 0.17 1.45 7.19 -52.49 -0.38 1.08 16 LS Contribution 343.87 15.07 5.18 5.18 Total: -1.00 -34.00 343.87 -6.51 -40.51 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -2.33 Total: 2.02 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -2.57 Total: 5.67 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.55 Total: -37.76 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -2.32 Total: -30.73 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.00 -6.51 -40.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780067263.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.314 kcal (2) G-P(sol) polarization free energy of solvation -34.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds