Wall clock time and date at job start Tue Mar 31 2020 13:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86796 * 120.00485 * 2 1 4 4 H 1.48503 * 109.47259 * 270.00667 * 3 2 1 5 5 H 1.48503 * 109.47079 * 29.99916 * 3 2 1 6 6 H 1.48500 * 109.47583 * 150.00310 * 3 2 1 7 7 C 1.37885 * 119.99666 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99551 * 179.97438 * 7 2 1 9 9 C 1.50690 * 120.00260 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47649 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00381 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00065 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99693 * 179.97438 * 11 10 9 14 14 O 1.45199 * 109.46821 * 179.97438 * 13 11 10 15 15 C 1.34706 * 117.00217 * 180.02562 * 14 13 11 16 16 O 1.21477 * 119.99835 * 0.02562 * 15 14 13 17 17 C 1.47742 * 120.00581 * 180.02562 * 15 14 13 18 18 C 1.39585 * 120.11682 * 0.02562 * 17 15 14 19 19 C 1.38439 * 119.78334 * 179.97438 * 18 17 15 20 20 O 1.35909 * 119.98167 * 179.97438 * 19 18 17 21 21 C 1.38862 * 120.04195 * 359.97438 * 19 18 17 22 22 C 1.38258 * 120.24449 * 0.03791 * 21 19 18 23 23 N 1.48018 * 119.89270 * 179.97438 * 22 21 19 24 24 O 1.21799 * 119.99794 * 179.97438 * 23 22 21 25 25 O 1.21797 * 119.99787 * 359.97438 * 23 22 21 26 26 C 1.37995 * 120.21432 * 359.96496 * 22 21 19 27 27 H 0.97006 * 119.99743 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47191 * 59.99782 * 9 7 2 29 29 H 1.09000 * 109.47283 * 300.00092 * 9 7 2 30 30 H 0.97000 * 119.99372 * 359.97438 * 10 9 7 31 31 H 1.09001 * 109.47053 * 60.00487 * 13 11 10 32 32 H 1.09000 * 109.47565 * 299.99796 * 13 11 10 33 33 H 1.07991 * 120.10681 * 359.70001 * 18 17 15 34 34 H 0.96696 * 114.00594 * 90.00165 * 20 19 18 35 35 H 1.07993 * 119.87993 * 180.02562 * 21 19 18 36 36 H 1.07999 * 120.01905 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2028 -3.6128 -0.0005 11 6 1.7535 -4.8834 -0.0011 12 8 0.5611 -5.1050 -0.0011 13 6 2.7329 -6.0289 -0.0016 14 8 2.0068 -7.2863 -0.0015 15 6 2.7404 -8.4161 -0.0015 16 8 3.9535 -8.3526 -0.0010 17 6 2.0697 -9.7325 -0.0019 18 6 0.6759 -9.8084 -0.0029 19 6 0.0546 -11.0456 -0.0039 20 8 -1.3022 -11.1242 -0.0044 21 6 0.8169 -12.2063 -0.0044 22 6 2.1975 -12.1328 -0.0031 23 7 3.0024 -13.3750 -0.0030 24 8 4.2188 -13.3124 -0.0024 25 8 2.4483 -14.4596 -0.0036 26 6 2.8275 -10.9050 -0.0021 27 1 -0.4850 0.8401 0.0004 28 1 0.6239 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8897 30 1 3.1565 -3.4355 -0.0009 31 1 3.3595 -5.9715 0.8884 32 1 3.3595 -5.9708 -0.8916 33 1 0.0842 -8.9051 0.0015 34 1 -1.6946 -11.1465 -0.8878 35 1 0.3295 -13.1700 -0.0055 36 1 3.9062 -10.8513 -0.0015 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000780067263.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:50 Heat of formation + Delta-G solvation = -159.116109 kcal Electronic energy + Delta-G solvation = -25484.897074 eV Core-core repulsion = 21130.384837 eV Total energy + Delta-G solvation = -4354.512237 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.093 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.43632 -42.10292 -40.96510 -40.30157 -38.21255 -37.78671 -37.58421 -36.19342 -34.42730 -33.67540 -31.66591 -30.84135 -28.66164 -27.87101 -26.03498 -24.54476 -23.76416 -22.57269 -21.67286 -20.91205 -19.92558 -19.26677 -18.93031 -18.77228 -18.59459 -18.05835 -17.96453 -17.70594 -17.21788 -16.95522 -16.79908 -16.32411 -16.10046 -15.89662 -14.77908 -14.69688 -14.20870 -14.02595 -14.00782 -13.92423 -13.65690 -13.48427 -12.94733 -12.85967 -12.72689 -12.65633 -12.40713 -12.39517 -12.23827 -12.03543 -11.87214 -11.50334 -11.02738 -10.94294 -10.82225 -10.42800 -9.93670 -8.30339 -6.46404 -1.49805 -0.92041 -0.03008 0.05511 0.97620 0.98913 1.44701 1.45731 1.53749 1.57141 1.96400 2.28485 2.46124 2.62171 3.05285 3.11444 3.24342 3.40274 3.47899 3.62795 3.80916 3.86160 4.02714 4.04109 4.29760 4.52465 4.64841 4.77343 4.94465 5.08957 5.11536 5.22128 5.41010 5.61716 5.81966 6.26598 6.32450 6.56975 6.62641 6.76141 7.19844 7.34502 8.81501 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.029496 B = 0.002006 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.063299 B =13952.506770 C =14878.587932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.983 3.017 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.256 1.256 7 C -0.557 4.557 8 H 0.086 0.914 9 C 0.267 3.733 10 N -0.699 5.699 11 C 0.500 3.500 12 O -0.581 6.581 13 C 0.061 3.939 14 O -0.335 6.335 15 C 0.518 3.482 16 O -0.508 6.508 17 C -0.105 4.105 18 C -0.030 4.030 19 C 0.124 3.876 20 O -0.485 6.485 21 C -0.040 4.040 22 C -0.045 4.045 23 N 0.031 4.969 24 O -0.180 6.180 25 O -0.149 6.149 26 C -0.001 4.001 27 H 0.269 0.731 28 H -0.006 1.006 29 H -0.007 1.007 30 H 0.413 0.587 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.170 0.830 34 H 0.426 0.574 35 H 0.187 0.813 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.572 -23.845 -1.835 24.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.195 4.195 3 Si 0.806 3.194 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.180 1.180 7 C -0.595 4.595 8 H 0.104 0.896 9 C 0.145 3.855 10 N -0.350 5.350 11 C 0.286 3.714 12 O -0.462 6.462 13 C -0.016 4.016 14 O -0.250 6.250 15 C 0.362 3.638 16 O -0.398 6.398 17 C -0.107 4.107 18 C -0.049 4.049 19 C 0.078 3.922 20 O -0.300 6.300 21 C -0.059 4.059 22 C -0.128 4.128 23 N 0.549 4.451 24 O -0.391 6.391 25 O -0.369 6.369 26 C -0.020 4.020 27 H 0.078 0.922 28 H 0.012 0.988 29 H 0.011 0.989 30 H 0.249 0.751 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.188 0.812 34 H 0.289 0.711 35 H 0.204 0.796 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 2.625 -23.188 -1.246 23.369 hybrid contribution 0.642 0.819 -0.457 1.137 sum 3.268 -22.369 -1.702 22.671 Atomic orbital electron populations 1.70120 1.08167 1.28589 1.49853 1.26023 0.95770 1.03795 0.93923 0.85179 0.78505 0.77136 0.78542 1.19689 1.21139 1.17980 1.21615 0.94439 0.90449 1.52958 0.89614 1.18621 0.88537 0.83701 0.94690 1.46042 1.11788 1.04750 1.72423 1.20614 0.89273 0.84632 0.76883 1.90689 1.18756 1.85257 1.51473 1.22866 0.92600 0.78291 1.07797 1.86542 1.40508 1.14300 1.83619 1.20894 0.85295 0.84792 0.72813 1.90896 1.14970 1.87945 1.45977 1.18502 0.93407 0.89192 1.09632 1.22480 0.93247 1.00480 0.88691 1.17758 0.84967 0.89468 1.00009 1.84887 1.13017 1.95468 1.36652 1.21756 0.90037 1.02715 0.91396 1.20579 0.91685 0.83814 1.16679 1.43654 1.01407 1.02741 0.97305 1.94601 0.95855 1.94118 1.54490 1.94540 1.74110 1.15636 1.52564 1.20975 1.03116 0.88164 0.89744 0.92229 0.98806 0.98875 0.75071 0.85310 0.85151 0.81214 0.71136 0.79609 0.81341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.03 13.29 21.45 0.28 -53.74 16 2 C 0.00 0.26 5.46 84.66 0.46 0.72 16 3 Si 0.98 40.79 29.54 68.60 2.03 42.82 16 4 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.29 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 7 C -0.56 -28.72 9.28 25.60 0.24 -28.48 16 8 H 0.09 3.96 7.60 -2.91 -0.02 3.94 16 9 C 0.27 13.73 5.43 85.63 0.46 14.19 16 10 N -0.70 -26.68 5.55 -466.80 -2.59 -29.27 16 11 C 0.50 18.05 7.91 87.66 0.69 18.74 16 12 O -0.58 -26.60 16.50 15.76 0.26 -26.34 16 13 C 0.06 1.48 5.95 71.24 0.42 1.91 16 14 O -0.33 -8.41 9.01 -49.78 -0.45 -8.86 16 15 C 0.52 11.24 7.90 70.33 0.56 11.80 16 16 O -0.51 -12.59 16.13 19.91 0.32 -12.27 16 17 C -0.11 -1.76 5.87 -20.11 -0.12 -1.87 16 18 C -0.03 -0.41 9.56 22.64 0.22 -0.20 16 19 C 0.12 1.27 6.70 22.47 0.15 1.42 16 20 O -0.49 -3.79 13.50 -92.52 -1.25 -5.04 16 21 C -0.04 -0.42 9.49 22.42 0.21 -0.21 16 22 C -0.04 -0.68 6.84 36.32 0.25 -0.43 16 23 N 0.03 0.60 4.45 -46.59 -0.21 0.40 16 24 O -0.18 -4.10 18.44 18.89 0.35 -3.75 16 25 O -0.15 -2.98 18.43 18.89 0.35 -2.63 16 26 C 0.00 -0.01 9.10 22.54 0.21 0.19 16 27 H 0.27 14.64 8.31 -92.70 -0.77 13.87 16 28 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 29 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 30 H 0.41 12.51 8.32 -92.71 -0.77 11.74 16 31 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.13 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.17 2.46 7.61 -2.92 -0.02 2.44 16 34 H 0.43 -0.94 9.06 -74.06 -0.67 -1.61 16 35 H 0.19 1.26 7.59 -2.91 -0.02 1.24 16 36 H 0.17 2.81 7.19 -2.91 -0.02 2.79 16 Total: -1.00 -75.44 343.87 2.59 -72.85 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -0.26 Total: 8.06 kcal Atomic # 6 Polarization: 14.03 SS G_CDS: 3.75 Total: 17.78 kcal Atomic # 7 Polarization: -80.11 SS G_CDS: -2.51 Total: -82.62 kcal Atomic # 8 Polarization: -58.47 SS G_CDS: -0.42 Total: -58.89 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Total: -75.44 2.59 -72.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780067263.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.266 kcal (2) G-P(sol) polarization free energy of solvation -75.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds