Wall clock time and date at job start Tue Mar 31 2020 14:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00373 * 2 1 4 4 H 1.48498 * 109.47511 * 275.00263 * 3 2 1 5 5 H 1.48500 * 109.46859 * 35.00004 * 3 2 1 6 6 H 1.48502 * 109.47130 * 154.99529 * 3 2 1 7 7 C 1.37882 * 120.00226 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00497 * 186.75754 * 7 2 1 9 9 C 1.50703 * 119.99372 * 6.74963 * 7 2 1 10 10 C 1.53041 * 109.45663 * 179.01406 * 9 7 2 11 11 C 1.53191 * 109.31200 * 178.62947 * 10 9 7 12 12 N 1.46925 * 108.77795 * 54.63750 * 11 10 9 13 13 C 1.34777 * 120.63210 * 126.36541 * 12 11 10 14 14 S 1.71198 * 119.99842 * 5.67174 * 13 12 11 15 15 N 1.34774 * 119.99981 * 185.67404 * 13 12 11 16 16 C 1.39952 * 119.99970 * 184.95353 * 15 13 12 17 17 C 1.38867 * 120.07048 * 312.82981 * 16 15 13 18 18 C 1.38113 * 119.93839 * 179.97438 * 17 16 15 19 19 C 1.38296 * 120.09249 * 359.97438 * 18 17 16 20 20 C 1.38264 * 120.15504 * 0.02562 * 19 18 17 21 21 C 1.38232 * 120.05462 * 0.27229 * 20 19 18 22 22 Cl 1.73597 * 120.04651 * 179.72245 * 21 20 19 23 23 C 1.46923 * 118.73545 * 306.64850 * 12 11 10 24 24 C 1.52756 * 109.01407 * 53.30313 * 23 12 11 25 25 H 0.97001 * 120.00198 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.46397 * 298.99139 * 9 7 2 27 27 H 1.09006 * 109.49503 * 58.68226 * 10 9 7 28 28 H 1.09000 * 109.52771 * 298.59806 * 10 9 7 29 29 H 1.09001 * 109.58561 * 294.84936 * 11 10 9 30 30 H 1.09006 * 109.70623 * 174.49614 * 11 10 9 31 31 H 0.97003 * 120.00108 * 4.95060 * 15 13 12 32 32 H 1.08000 * 120.02984 * 359.95623 * 17 16 15 33 33 H 1.08001 * 119.95561 * 180.02562 * 18 17 16 34 34 H 1.08003 * 119.92667 * 180.02562 * 19 18 17 35 35 H 1.08000 * 119.97411 * 180.02562 * 20 19 18 36 36 H 1.08999 * 109.58857 * 173.14281 * 23 12 11 37 37 H 1.09003 * 109.58601 * 293.56200 * 23 12 11 38 38 H 1.09005 * 109.56629 * 185.55315 * 24 23 12 39 39 H 1.09002 * 109.38695 * 65.51501 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3910 2.1075 -1.3947 5 1 1.5035 2.6198 0.8031 6 1 3.5955 1.4118 0.5918 7 6 2.0045 -1.1941 -0.0005 8 1 3.0788 -1.1974 0.1095 9 6 1.2587 -2.4946 -0.1545 10 6 2.2541 -3.6570 -0.1468 11 6 1.4900 -4.9791 -0.2691 12 7 0.6366 -4.9234 -1.4638 13 6 0.7065 -5.8874 -2.4032 14 16 1.6885 -7.2656 -2.1439 15 7 0.0033 -5.7663 -3.5465 16 6 -0.0067 -6.8126 -4.4760 17 6 1.1833 -7.4237 -4.8486 18 6 1.1702 -8.4563 -5.7657 19 6 -0.0262 -8.8827 -6.3128 20 6 -1.2133 -8.2770 -5.9445 21 6 -1.2068 -7.2389 -5.0318 22 17 -2.6966 -6.4738 -4.5750 23 6 -0.2898 -3.7936 -1.6181 24 6 0.4902 -2.4877 -1.4780 25 1 -0.4850 0.8400 0.0004 26 1 0.5577 -2.6112 0.6718 27 1 2.8175 -3.6474 0.7863 28 1 2.9406 -3.5545 -0.9873 29 1 0.8707 -5.1264 0.6157 30 1 2.1960 -5.8044 -0.3625 31 1 -0.4959 -4.9540 -3.7252 32 1 2.1182 -7.0915 -4.4219 33 1 2.0955 -8.9320 -6.0554 34 1 -0.0334 -9.6907 -7.0294 35 1 -2.1460 -8.6126 -6.3732 36 1 -0.7562 -3.8352 -2.6024 37 1 -1.0572 -3.8422 -0.8455 38 1 -0.2019 -1.6457 -1.4924 39 1 1.1929 -2.3952 -2.3062 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781546539.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:17 Heat of formation + Delta-G solvation = 39.580276 kcal Electronic energy + Delta-G solvation = -22653.011229 eV Core-core repulsion = 19326.410244 eV Total energy + Delta-G solvation = -3326.600985 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.43335 -39.08951 -36.68712 -36.48031 -34.03316 -31.70740 -30.93334 -30.78454 -29.52693 -26.77229 -24.46136 -23.26291 -22.94758 -22.26576 -21.27277 -19.47820 -18.50475 -17.92184 -16.65550 -16.44907 -15.94412 -15.66341 -14.68934 -14.65500 -14.37253 -14.28135 -13.87905 -13.76698 -13.36106 -13.09910 -12.82678 -12.41981 -12.22056 -11.89350 -11.65313 -11.63344 -11.50128 -11.17129 -11.04778 -10.97913 -10.80118 -10.62959 -10.32659 -9.93385 -9.62411 -9.32961 -9.12992 -8.97413 -8.51488 -8.34643 -7.55508 -6.96752 -6.20493 -4.24640 0.81482 1.15603 1.66422 1.88535 2.05078 2.69601 3.19010 3.25381 3.27553 3.30674 3.54027 4.29289 4.63508 4.83346 4.95925 5.04700 5.12256 5.16301 5.29400 5.45694 5.54767 5.67103 5.71174 5.83123 5.93364 6.01382 6.02850 6.16284 6.29040 6.35124 6.41072 6.50268 6.68192 6.74898 6.80660 6.97146 7.00704 7.32890 7.46920 7.66788 7.81081 8.20589 8.78435 9.41053 10.86694 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.019322 B = 0.003360 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.744019 B = 8331.284387 C = 9035.485987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.514 4.514 8 H 0.058 0.942 9 C 0.047 3.953 10 C -0.122 4.122 11 C 0.098 3.902 12 N -0.536 5.536 13 C 0.565 3.435 14 S -0.659 6.659 15 N -0.642 5.642 16 C 0.145 3.855 17 C -0.055 4.055 18 C -0.112 4.112 19 C -0.107 4.107 20 C -0.113 4.113 21 C -0.044 4.044 22 Cl -0.069 7.069 23 C 0.089 3.911 24 C -0.122 4.122 25 H 0.262 0.738 26 H 0.032 0.968 27 H 0.071 0.929 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.116 0.884 31 H 0.409 0.591 32 H 0.157 0.843 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.061 0.939 37 H 0.084 0.916 38 H 0.107 0.893 39 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.824 -12.854 -11.623 17.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.552 4.552 8 H 0.076 0.924 9 C 0.028 3.972 10 C -0.161 4.161 11 C -0.023 4.023 12 N -0.240 5.240 13 C 0.205 3.795 14 S -0.526 6.526 15 N -0.272 5.272 16 C 0.050 3.950 17 C -0.077 4.077 18 C -0.132 4.132 19 C -0.125 4.125 20 C -0.132 4.132 21 C -0.074 4.074 22 Cl -0.040 7.040 23 C -0.035 4.035 24 C -0.161 4.161 25 H 0.072 0.928 26 H 0.050 0.950 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.134 0.866 31 H 0.251 0.749 32 H 0.174 0.826 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.152 0.848 36 H 0.079 0.921 37 H 0.102 0.898 38 H 0.125 0.875 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.486 -13.414 -11.219 17.832 hybrid contribution -0.701 2.218 -0.149 2.331 sum -4.188 -11.197 -11.368 16.497 Atomic orbital electron populations 1.69864 1.05924 1.26763 1.50393 1.24962 0.94861 0.99221 0.94816 0.86590 0.80093 0.83413 0.78044 1.20706 1.21197 1.19775 1.21158 0.93698 0.90486 1.49903 0.92390 1.18673 0.93208 0.92365 0.92941 1.22047 0.98960 0.93302 1.01773 1.22529 0.94203 1.02004 0.83593 1.47681 1.37095 1.19913 1.19267 1.22227 0.85611 0.90396 0.81242 1.93138 1.48960 1.21667 1.88838 1.42265 1.50221 1.18611 1.16127 1.17122 0.92482 0.92592 0.92774 1.21578 0.98094 0.95380 0.92692 1.21110 0.98499 0.97163 0.96402 1.21138 0.91814 0.99714 0.99878 1.20791 0.99478 0.95165 0.97808 1.20904 0.85544 0.98356 1.02571 1.98374 1.32980 1.80783 1.91894 1.22333 0.92656 0.87676 1.00844 1.21982 1.00033 0.93621 1.00464 0.92839 0.94990 0.91008 0.92535 0.90631 0.86593 0.74920 0.82604 0.84981 0.85124 0.84794 0.92083 0.89806 0.87540 0.93753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.31 11.54 55.43 0.64 -22.67 16 2 C 0.06 1.61 5.21 -17.82 -0.09 1.52 16 3 Si 0.89 20.08 29.54 -169.99 -5.02 15.06 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 7 C -0.51 -12.93 8.57 -34.44 -0.29 -13.23 16 8 H 0.06 1.47 7.75 -52.49 -0.41 1.06 16 9 C 0.05 1.02 2.03 -91.73 -0.19 0.83 16 10 C -0.12 -2.29 5.30 -26.61 -0.14 -2.43 16 11 C 0.10 1.65 6.30 -3.71 -0.02 1.63 16 12 N -0.54 -8.75 2.98 -175.06 -0.52 -9.27 16 13 C 0.56 9.21 7.58 -86.92 -0.66 8.55 16 14 S -0.66 -12.13 24.22 -107.50 -2.60 -14.74 16 15 N -0.64 -8.96 4.73 -11.37 -0.05 -9.02 16 16 C 0.15 1.93 5.89 -83.65 -0.49 1.44 16 17 C -0.05 -0.71 7.88 -39.39 -0.31 -1.02 16 18 C -0.11 -1.14 10.04 -39.61 -0.40 -1.54 16 19 C -0.11 -0.95 10.04 -39.55 -0.40 -1.34 16 20 C -0.11 -1.10 9.83 -39.57 -0.39 -1.49 16 21 C -0.04 -0.52 6.34 -39.32 -0.25 -0.77 16 22 Cl -0.07 -0.79 28.22 -51.86 -1.46 -2.25 16 23 C 0.09 1.42 6.40 -3.94 -0.03 1.40 16 24 C -0.12 -2.43 5.13 -26.84 -0.14 -2.57 16 25 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.12 1.99 6.00 -50.61 -0.30 1.69 16 31 H 0.41 5.18 6.00 -40.82 -0.24 4.93 16 32 H 0.16 2.26 6.26 -48.48 -0.30 1.95 16 33 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.13 0.79 8.06 -52.48 -0.42 0.36 16 35 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.06 0.83 5.58 -51.93 -0.29 0.54 16 37 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.11 2.39 6.22 -51.93 -0.32 2.06 16 39 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 338.23 15.07 5.10 5.10 Total: -1.00 -27.83 338.23 -12.53 -40.36 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -4.81 Total: 6.47 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -3.80 Total: -9.04 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.06 Total: -40.96 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: -12.13 SS G_CDS: -2.60 Total: -14.74 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.46 Total: -2.25 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.83 -12.53 -40.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781546539.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.944 kcal (2) G-P(sol) polarization free energy of solvation -27.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds