Wall clock time and date at job start Tue Mar 31 2020 14:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00373 * 2 1 4 4 H 1.48498 * 109.47511 * 275.00263 * 3 2 1 5 5 H 1.48500 * 109.46859 * 35.00004 * 3 2 1 6 6 H 1.48502 * 109.47130 * 154.99529 * 3 2 1 7 7 C 1.37882 * 120.00226 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00497 * 186.75754 * 7 2 1 9 9 C 1.50703 * 119.99372 * 6.74963 * 7 2 1 10 10 C 1.53041 * 109.45663 * 179.01406 * 9 7 2 11 11 C 1.53191 * 109.31200 * 178.62947 * 10 9 7 12 12 N 1.46925 * 108.77795 * 54.63750 * 11 10 9 13 13 C 1.34777 * 120.63210 * 126.36541 * 12 11 10 14 14 S 1.71198 * 119.99842 * 5.67174 * 13 12 11 15 15 N 1.34774 * 119.99981 * 185.67404 * 13 12 11 16 16 C 1.39952 * 119.99970 * 184.95353 * 15 13 12 17 17 C 1.38867 * 120.07048 * 312.82981 * 16 15 13 18 18 C 1.38113 * 119.93839 * 179.97438 * 17 16 15 19 19 C 1.38296 * 120.09249 * 359.97438 * 18 17 16 20 20 C 1.38264 * 120.15504 * 0.02562 * 19 18 17 21 21 C 1.38232 * 120.05462 * 0.27229 * 20 19 18 22 22 Cl 1.73597 * 120.04651 * 179.72245 * 21 20 19 23 23 C 1.46923 * 118.73545 * 306.64850 * 12 11 10 24 24 C 1.52756 * 109.01407 * 53.30313 * 23 12 11 25 25 H 0.97001 * 120.00198 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.46397 * 298.99139 * 9 7 2 27 27 H 1.09006 * 109.49503 * 58.68226 * 10 9 7 28 28 H 1.09000 * 109.52771 * 298.59806 * 10 9 7 29 29 H 1.09001 * 109.58561 * 294.84936 * 11 10 9 30 30 H 1.09006 * 109.70623 * 174.49614 * 11 10 9 31 31 H 0.97003 * 120.00108 * 4.95060 * 15 13 12 32 32 H 1.08000 * 120.02984 * 359.95623 * 17 16 15 33 33 H 1.08001 * 119.95561 * 180.02562 * 18 17 16 34 34 H 1.08003 * 119.92667 * 180.02562 * 19 18 17 35 35 H 1.08000 * 119.97411 * 180.02562 * 20 19 18 36 36 H 1.08999 * 109.58857 * 173.14281 * 23 12 11 37 37 H 1.09003 * 109.58601 * 293.56200 * 23 12 11 38 38 H 1.09005 * 109.56629 * 185.55315 * 24 23 12 39 39 H 1.09002 * 109.38695 * 65.51501 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3910 2.1075 -1.3947 5 1 1.5035 2.6198 0.8031 6 1 3.5955 1.4118 0.5918 7 6 2.0045 -1.1941 -0.0005 8 1 3.0788 -1.1974 0.1095 9 6 1.2587 -2.4946 -0.1545 10 6 2.2541 -3.6570 -0.1468 11 6 1.4900 -4.9791 -0.2691 12 7 0.6366 -4.9234 -1.4638 13 6 0.7065 -5.8874 -2.4032 14 16 1.6885 -7.2656 -2.1439 15 7 0.0033 -5.7663 -3.5465 16 6 -0.0067 -6.8126 -4.4760 17 6 1.1833 -7.4237 -4.8486 18 6 1.1702 -8.4563 -5.7657 19 6 -0.0262 -8.8827 -6.3128 20 6 -1.2133 -8.2770 -5.9445 21 6 -1.2068 -7.2389 -5.0318 22 17 -2.6966 -6.4738 -4.5750 23 6 -0.2898 -3.7936 -1.6181 24 6 0.4902 -2.4877 -1.4780 25 1 -0.4850 0.8400 0.0004 26 1 0.5577 -2.6112 0.6718 27 1 2.8175 -3.6474 0.7863 28 1 2.9406 -3.5545 -0.9873 29 1 0.8707 -5.1264 0.6157 30 1 2.1960 -5.8044 -0.3625 31 1 -0.4959 -4.9540 -3.7252 32 1 2.1182 -7.0915 -4.4219 33 1 2.0955 -8.9320 -6.0554 34 1 -0.0334 -9.6907 -7.0294 35 1 -2.1460 -8.6126 -6.3732 36 1 -0.7562 -3.8352 -2.6024 37 1 -1.0572 -3.8422 -0.8455 38 1 -0.2019 -1.6457 -1.4924 39 1 1.1929 -2.3952 -2.3062 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781546539.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:17 Heat of formation + Delta-G solvation = 27.964126 kcal Electronic energy + Delta-G solvation = -22653.514943 eV Core-core repulsion = 19326.410244 eV Total energy + Delta-G solvation = -3327.104699 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.57465 -40.23364 -37.79747 -37.49195 -35.60916 -33.38348 -32.27428 -31.74317 -30.59076 -28.34431 -25.98164 -24.62109 -24.03349 -23.41112 -22.53301 -20.94099 -19.73111 -19.12825 -18.31922 -17.59697 -17.13618 -16.68105 -16.50818 -15.86314 -15.68815 -15.21723 -15.07052 -14.79035 -14.73000 -14.52851 -14.47589 -13.62418 -13.50094 -13.26188 -12.95081 -12.83053 -12.62752 -12.49018 -12.46822 -12.36713 -12.21809 -12.07129 -11.96014 -11.58673 -11.11082 -10.98127 -10.59676 -10.44453 -9.87973 -9.39841 -8.96616 -8.32942 -8.15267 -6.25134 -0.18192 0.28859 0.51861 0.73882 1.01156 1.38575 1.42657 1.46660 1.50561 2.03023 2.41047 2.70166 3.13425 3.67745 3.80615 3.97629 4.11115 4.11915 4.21199 4.26187 4.38643 4.39295 4.45882 4.50541 4.75744 4.80146 4.87348 4.97708 5.06626 5.13622 5.19307 5.25702 5.29363 5.47135 5.54445 5.58389 5.66803 5.89296 5.89890 5.99786 6.12766 6.31794 6.83420 7.42623 8.89907 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.019322 B = 0.003360 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.744019 B = 8331.284387 C = 9035.485987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.022 3.978 3 Si 0.944 3.056 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.049 0.951 9 C 0.045 3.955 10 C -0.111 4.111 11 C 0.109 3.891 12 N -0.540 5.540 13 C 0.575 3.425 14 S -0.700 6.700 15 N -0.628 5.628 16 C 0.116 3.884 17 C -0.072 4.072 18 C -0.112 4.112 19 C -0.093 4.093 20 C -0.111 4.111 21 C -0.052 4.052 22 Cl -0.069 7.069 23 C 0.101 3.899 24 C -0.111 4.111 25 H 0.262 0.738 26 H 0.009 0.991 27 H 0.074 0.926 28 H 0.047 0.953 29 H 0.085 0.915 30 H 0.115 0.885 31 H 0.414 0.586 32 H 0.134 0.866 33 H 0.153 0.847 34 H 0.169 0.831 35 H 0.159 0.841 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.494 -14.167 -13.350 19.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.178 4.178 3 Si 0.771 3.229 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.572 4.572 8 H 0.068 0.932 9 C 0.026 3.974 10 C -0.149 4.149 11 C -0.013 4.013 12 N -0.244 5.244 13 C 0.214 3.786 14 S -0.568 6.568 15 N -0.257 5.257 16 C 0.022 3.978 17 C -0.094 4.094 18 C -0.131 4.131 19 C -0.111 4.111 20 C -0.130 4.130 21 C -0.081 4.081 22 Cl -0.041 7.041 23 C -0.023 4.023 24 C -0.150 4.150 25 H 0.071 0.929 26 H 0.027 0.973 27 H 0.093 0.907 28 H 0.066 0.934 29 H 0.103 0.897 30 H 0.133 0.867 31 H 0.258 0.742 32 H 0.152 0.848 33 H 0.171 0.829 34 H 0.186 0.814 35 H 0.177 0.823 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.169 -14.740 -12.989 20.083 hybrid contribution -0.507 2.575 0.292 2.641 sum -4.675 -12.164 -12.697 18.194 Atomic orbital electron populations 1.69958 1.06779 1.27261 1.50985 1.25574 0.95591 1.01815 0.94789 0.85753 0.78968 0.80232 0.77973 1.20384 1.21078 1.19689 1.21501 0.93613 0.92204 1.49838 0.93234 1.18629 0.93341 0.92319 0.93110 1.21869 0.98223 0.93270 1.01561 1.22364 0.94278 1.00438 0.84259 1.47573 1.37361 1.20119 1.19308 1.21984 0.85421 0.89599 0.81623 1.93183 1.50655 1.23428 1.89577 1.42235 1.49045 1.19100 1.15330 1.17335 0.93424 0.93356 0.93675 1.21500 0.97149 0.96674 0.94103 1.21417 1.00223 0.96081 0.95418 1.21569 0.90659 0.99625 0.99256 1.21194 1.01015 0.94064 0.96756 1.21057 0.85029 0.99034 1.03006 1.98373 1.32784 1.80916 1.91995 1.22165 0.91949 0.85534 1.02681 1.21699 0.99387 0.94998 0.98931 0.92880 0.97251 0.90704 0.93445 0.89682 0.86705 0.74247 0.84785 0.82906 0.81393 0.82343 0.89351 0.89307 0.89944 0.94602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.23 11.54 21.45 0.25 -47.98 16 2 C 0.02 1.12 5.21 84.66 0.44 1.56 16 3 Si 0.94 41.42 29.54 68.60 2.03 43.44 16 4 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.53 -27.29 8.57 25.60 0.22 -27.07 16 8 H 0.05 2.55 7.75 -2.92 -0.02 2.53 16 9 C 0.04 1.99 2.03 -11.51 -0.02 1.96 16 10 C -0.11 -4.19 5.30 30.67 0.16 -4.03 16 11 C 0.11 3.61 6.30 86.36 0.54 4.16 16 12 N -0.54 -17.32 2.98 -707.75 -2.11 -19.43 16 13 C 0.58 18.43 7.58 179.06 1.36 19.79 16 14 S -0.70 -25.74 24.22 -56.49 -1.37 -27.11 16 15 N -0.63 -16.98 4.73 -189.90 -0.90 -17.88 16 16 C 0.12 2.96 5.89 38.17 0.22 3.18 16 17 C -0.07 -1.79 7.88 22.39 0.18 -1.61 16 18 C -0.11 -2.01 10.04 22.25 0.22 -1.79 16 19 C -0.09 -1.30 10.04 22.29 0.22 -1.07 16 20 C -0.11 -1.81 9.83 22.27 0.22 -1.59 16 21 C -0.05 -1.13 6.34 22.44 0.14 -0.99 16 22 Cl -0.07 -1.46 28.22 -2.72 -0.08 -1.54 16 23 C 0.10 3.15 6.40 86.22 0.55 3.70 16 24 C -0.11 -4.47 5.13 30.53 0.16 -4.31 16 25 H 0.26 13.33 8.31 -92.71 -0.77 12.56 16 26 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.07 2.74 8.14 -2.38 -0.02 2.73 16 28 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.12 3.93 6.00 -3.22 -0.02 3.91 16 31 H 0.41 9.99 6.00 -92.71 -0.56 9.44 16 32 H 0.13 3.92 6.26 -5.46 -0.03 3.89 16 33 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 34 H 0.17 1.13 8.06 -2.91 -0.02 1.10 16 35 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 36 H 0.09 2.27 5.58 -2.39 -0.01 2.26 16 37 H 0.09 2.74 8.14 -2.39 -0.02 2.73 16 38 H 0.08 3.76 6.22 -2.38 -0.01 3.74 16 39 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -60.55 338.23 2.94 -57.60 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.50 Total: 21.01 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 4.62 Total: -8.11 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -2.76 Total: -85.29 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.44 kcal Atomic # 16 Polarization: -25.74 SS G_CDS: -1.37 Total: -27.11 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.08 Total: -1.54 kcal Total: -60.55 2.94 -57.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781546539.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.565 kcal (2) G-P(sol) polarization free energy of solvation -60.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds