Wall clock time and date at job start Tue Mar 31 2020 14:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99560 * 2 1 4 4 H 1.48507 * 109.47115 * 269.99824 * 3 2 1 5 5 H 1.48503 * 109.47318 * 29.99892 * 3 2 1 6 6 H 1.48498 * 109.47200 * 150.00424 * 3 2 1 7 7 C 1.37872 * 120.00488 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00317 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00189 * 0.02562 * 7 2 1 10 10 C 1.53034 * 109.46486 * 180.02562 * 9 7 2 11 11 C 1.53190 * 109.31664 * 178.62890 * 10 9 7 12 12 N 1.46919 * 108.77544 * 54.63122 * 11 10 9 13 13 C 1.34775 * 120.63018 * 126.37265 * 12 11 10 14 14 S 1.71202 * 120.00203 * 5.48231 * 13 12 11 15 15 N 1.34782 * 120.00129 * 185.48186 * 13 12 11 16 16 C 1.39937 * 120.00228 * 185.92530 * 15 13 12 17 17 C 1.38870 * 120.06096 * 220.72742 * 16 15 13 18 18 C 1.38114 * 119.94166 * 179.72784 * 17 16 15 19 19 C 1.38387 * 120.05634 * 0.22507 * 18 17 16 20 20 Cl 1.73605 * 119.93858 * 180.02562 * 19 18 17 21 21 C 1.38385 * 120.11739 * 0.02707 * 19 18 17 22 22 C 1.38100 * 120.05936 * 0.02562 * 21 19 18 23 23 C 1.46927 * 118.73996 * 306.64668 * 12 11 10 24 24 C 1.52756 * 109.01101 * 53.30999 * 23 12 11 25 25 H 0.96991 * 120.00548 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.45645 * 299.97111 * 9 7 2 27 27 H 1.08998 * 109.50000 * 58.67365 * 10 9 7 28 28 H 1.09002 * 109.52012 * 298.59674 * 10 9 7 29 29 H 1.09003 * 109.58285 * 294.84602 * 11 10 9 30 30 H 1.09000 * 109.70910 * 174.49371 * 11 10 9 31 31 H 0.97001 * 119.99628 * 5.93245 * 15 13 12 32 32 H 1.07997 * 120.02874 * 359.97438 * 17 16 15 33 33 H 1.07998 * 119.97125 * 180.25221 * 18 17 16 34 34 H 1.07999 * 119.96745 * 180.02562 * 21 19 18 35 35 H 1.08007 * 120.03096 * 179.97438 * 22 21 19 36 36 H 1.09002 * 109.58720 * 173.14339 * 23 12 11 37 37 H 1.08999 * 109.58974 * 293.56525 * 23 12 11 38 38 H 1.08996 * 109.57100 * 185.55328 * 24 23 12 39 39 H 1.09000 * 109.36152 * 65.49524 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 6 2.2460 -3.6621 0.0018 11 6 1.4770 -4.9866 0.0364 12 7 0.5237 -5.0092 -1.0812 13 6 0.5142 -6.0353 -1.9550 14 16 1.5213 -7.3943 -1.6906 15 7 -0.2881 -5.9916 -3.0371 16 6 -0.3915 -7.1061 -3.8771 17 6 -0.4335 -6.9373 -5.2548 18 6 -0.5299 -8.0393 -6.0817 19 6 -0.5892 -9.3106 -5.5382 20 17 -0.7096 -10.6937 -6.5805 21 6 -0.5528 -9.4812 -4.1654 22 6 -0.4576 -8.3826 -3.3341 23 6 -0.4151 -3.8891 -1.2318 24 6 0.3712 -2.5796 -1.2491 25 1 -0.4850 0.8399 -0.0004 26 1 0.6247 -2.5567 0.8906 27 1 2.8877 -3.5910 0.8800 28 1 2.8571 -3.6196 -0.8998 29 1 0.9367 -5.0708 0.9794 30 1 2.1740 -5.8189 -0.0609 31 1 -0.7939 -5.1875 -3.2337 32 1 -0.3869 -5.9454 -5.6795 33 1 -0.5585 -7.9088 -7.1534 34 1 -0.5989 -10.4745 -3.7439 35 1 -0.4296 -8.5163 -2.2627 36 1 -0.9646 -3.9960 -2.1671 37 1 -1.1130 -3.8820 -0.3945 38 1 -0.3212 -1.7380 -1.2612 39 1 0.9996 -2.5472 -2.1391 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781546912.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:20 Heat of formation + Delta-G solvation = 39.168217 kcal Electronic energy + Delta-G solvation = -22288.956516 eV Core-core repulsion = 18962.337663 eV Total energy + Delta-G solvation = -3326.618853 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.46370 -39.11731 -37.03056 -36.05159 -34.00517 -31.70061 -31.27520 -30.82505 -29.36017 -26.78822 -24.49390 -23.28189 -23.09156 -22.25683 -21.27629 -19.46887 -18.46482 -17.97525 -16.81534 -16.48981 -15.99167 -15.53984 -14.74425 -14.68827 -14.46475 -14.22959 -13.70140 -13.65651 -13.42565 -13.14079 -12.95296 -12.54520 -12.43637 -11.96821 -11.71634 -11.65004 -11.39496 -11.08518 -11.04518 -10.98286 -10.82955 -10.65221 -10.33136 -9.89845 -9.64990 -9.40813 -9.22281 -9.06788 -8.56355 -8.24989 -7.56439 -6.98624 -6.22293 -4.28549 0.76479 1.20106 1.61371 1.96402 2.04725 2.65650 3.17215 3.21493 3.25248 3.28701 3.52060 4.26602 4.61894 4.73517 4.90659 5.09082 5.09544 5.13402 5.30398 5.44016 5.50775 5.65452 5.71270 5.79559 5.84372 5.92508 6.05227 6.10232 6.18870 6.28228 6.39054 6.48109 6.64075 6.73260 6.78662 6.96358 6.98094 7.29639 7.44275 7.64194 7.80318 8.17785 8.75038 9.38150 10.83673 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.027831 B = 0.002619 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.842721 B =10689.326490 C =11241.750536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.062 3.938 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.513 4.513 8 H 0.058 0.942 9 C 0.047 3.953 10 C -0.123 4.123 11 C 0.098 3.902 12 N -0.536 5.536 13 C 0.561 3.439 14 S -0.657 6.657 15 N -0.644 5.644 16 C 0.148 3.852 17 C -0.119 4.119 18 C -0.105 4.105 19 C -0.037 4.037 20 Cl -0.078 7.078 21 C -0.102 4.102 22 C -0.062 4.062 23 C 0.088 3.912 24 C -0.125 4.125 25 H 0.262 0.738 26 H 0.031 0.969 27 H 0.071 0.929 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.116 0.884 31 H 0.408 0.592 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.154 0.846 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.113 0.887 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.850 -13.188 -9.117 17.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.551 4.551 8 H 0.076 0.924 9 C 0.028 3.972 10 C -0.162 4.162 11 C -0.024 4.024 12 N -0.239 5.239 13 C 0.202 3.798 14 S -0.524 6.524 15 N -0.273 5.273 16 C 0.054 3.946 17 C -0.140 4.140 18 C -0.125 4.125 19 C -0.064 4.064 20 Cl -0.049 7.049 21 C -0.123 4.123 22 C -0.085 4.085 23 C -0.036 4.036 24 C -0.164 4.164 25 H 0.072 0.928 26 H 0.049 0.951 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.134 0.866 31 H 0.250 0.750 32 H 0.151 0.849 33 H 0.153 0.847 34 H 0.154 0.846 35 H 0.171 0.829 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.131 0.869 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.334 -13.909 -8.866 17.336 hybrid contribution -0.310 2.115 -0.431 2.181 sum -5.644 -11.794 -9.297 16.043 Atomic orbital electron populations 1.69791 1.05919 1.26784 1.50746 1.24962 0.94912 0.99260 0.94795 0.86571 0.79975 0.83196 0.78187 1.20673 1.21140 1.19799 1.21163 0.93100 0.90266 1.50561 0.92419 1.18680 0.92663 0.92230 0.93592 1.22050 0.98960 0.93222 1.01923 1.22523 0.91890 1.02119 0.85854 1.47744 1.33905 1.17536 1.24761 1.22303 0.85217 0.90629 0.81696 1.93230 1.48660 1.23867 1.86645 1.42368 1.44851 1.16514 1.23600 1.17485 1.01710 0.86512 0.88920 1.20818 1.02748 0.99452 0.90986 1.20701 1.01583 0.89974 1.00196 1.20936 1.06010 0.88169 0.91334 1.98359 1.96582 1.42879 1.67074 1.20846 1.00977 0.99698 0.90741 1.21401 0.94901 0.90061 1.02144 1.22367 0.92192 0.87960 1.01080 1.22045 1.00319 0.93607 1.00403 0.92792 0.95117 0.91001 0.92548 0.90589 0.86584 0.74990 0.84930 0.84705 0.84635 0.82897 0.92027 0.89776 0.86919 0.93864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.93 11.31 55.43 0.63 -22.30 16 2 C 0.06 1.56 5.30 -17.82 -0.09 1.47 16 3 Si 0.89 19.88 29.54 -169.99 -5.02 14.86 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.51 -12.73 8.56 -34.44 -0.29 -13.03 16 8 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.05 1.01 2.07 -91.73 -0.19 0.82 16 10 C -0.12 -2.27 5.30 -26.62 -0.14 -2.41 16 11 C 0.10 1.59 6.30 -3.72 -0.02 1.57 16 12 N -0.54 -8.31 2.98 -175.06 -0.52 -8.83 16 13 C 0.56 8.68 7.47 -86.91 -0.65 8.03 16 14 S -0.66 -11.92 24.27 -107.50 -2.61 -14.53 16 15 N -0.64 -8.10 5.22 -11.39 -0.06 -8.16 16 16 C 0.15 1.81 5.93 -83.68 -0.50 1.32 16 17 C -0.12 -1.23 9.97 -39.39 -0.39 -1.63 16 18 C -0.10 -1.04 9.82 -39.57 -0.39 -1.42 16 19 C -0.04 -0.40 6.32 -39.47 -0.25 -0.65 16 20 Cl -0.08 -0.76 28.95 -51.86 -1.50 -2.26 16 21 C -0.10 -1.14 9.82 -39.58 -0.39 -1.53 16 22 C -0.06 -0.79 7.85 -39.39 -0.31 -1.10 16 23 C 0.09 1.31 6.40 -3.93 -0.03 1.29 16 24 C -0.13 -2.42 5.14 -26.83 -0.14 -2.55 16 25 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.12 1.96 6.00 -50.58 -0.30 1.66 16 31 H 0.41 4.26 6.33 -40.82 -0.26 4.00 16 32 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.15 2.14 6.20 -48.25 -0.30 1.84 16 36 H 0.06 0.74 5.58 -51.93 -0.29 0.45 16 37 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.11 2.46 6.03 -51.93 -0.31 2.15 16 39 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 339.06 15.07 5.11 5.11 Total: -1.00 -27.52 339.06 -12.57 -40.09 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -4.81 Total: 5.87 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -3.78 Total: -9.84 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.05 Total: -39.29 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Atomic # 16 Polarization: -11.92 SS G_CDS: -2.61 Total: -14.53 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.50 Total: -2.26 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.52 -12.57 -40.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781546912.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.256 kcal (2) G-P(sol) polarization free energy of solvation -27.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds