Wall clock time and date at job start Tue Mar 31 2020 14:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99560 * 2 1 4 4 H 1.48507 * 109.47115 * 269.99824 * 3 2 1 5 5 H 1.48503 * 109.47318 * 29.99892 * 3 2 1 6 6 H 1.48498 * 109.47200 * 150.00424 * 3 2 1 7 7 C 1.37872 * 120.00488 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00317 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00189 * 0.02562 * 7 2 1 10 10 C 1.53034 * 109.46486 * 180.02562 * 9 7 2 11 11 C 1.53190 * 109.31664 * 178.62890 * 10 9 7 12 12 N 1.46919 * 108.77544 * 54.63122 * 11 10 9 13 13 C 1.34775 * 120.63018 * 126.37265 * 12 11 10 14 14 S 1.71202 * 120.00203 * 5.48231 * 13 12 11 15 15 N 1.34782 * 120.00129 * 185.48186 * 13 12 11 16 16 C 1.39937 * 120.00228 * 185.92530 * 15 13 12 17 17 C 1.38870 * 120.06096 * 220.72742 * 16 15 13 18 18 C 1.38114 * 119.94166 * 179.72784 * 17 16 15 19 19 C 1.38387 * 120.05634 * 0.22507 * 18 17 16 20 20 Cl 1.73605 * 119.93858 * 180.02562 * 19 18 17 21 21 C 1.38385 * 120.11739 * 0.02707 * 19 18 17 22 22 C 1.38100 * 120.05936 * 0.02562 * 21 19 18 23 23 C 1.46927 * 118.73996 * 306.64668 * 12 11 10 24 24 C 1.52756 * 109.01101 * 53.30999 * 23 12 11 25 25 H 0.96991 * 120.00548 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.45645 * 299.97111 * 9 7 2 27 27 H 1.08998 * 109.50000 * 58.67365 * 10 9 7 28 28 H 1.09002 * 109.52012 * 298.59674 * 10 9 7 29 29 H 1.09003 * 109.58285 * 294.84602 * 11 10 9 30 30 H 1.09000 * 109.70910 * 174.49371 * 11 10 9 31 31 H 0.97001 * 119.99628 * 5.93245 * 15 13 12 32 32 H 1.07997 * 120.02874 * 359.97438 * 17 16 15 33 33 H 1.07998 * 119.97125 * 180.25221 * 18 17 16 34 34 H 1.07999 * 119.96745 * 180.02562 * 21 19 18 35 35 H 1.08007 * 120.03096 * 179.97438 * 22 21 19 36 36 H 1.09002 * 109.58720 * 173.14339 * 23 12 11 37 37 H 1.08999 * 109.58974 * 293.56525 * 23 12 11 38 38 H 1.08996 * 109.57100 * 185.55328 * 24 23 12 39 39 H 1.09000 * 109.36152 * 65.49524 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 6 2.2460 -3.6621 0.0018 11 6 1.4770 -4.9866 0.0364 12 7 0.5237 -5.0092 -1.0812 13 6 0.5142 -6.0353 -1.9550 14 16 1.5213 -7.3943 -1.6906 15 7 -0.2881 -5.9916 -3.0371 16 6 -0.3915 -7.1061 -3.8771 17 6 -0.4335 -6.9373 -5.2548 18 6 -0.5299 -8.0393 -6.0817 19 6 -0.5892 -9.3106 -5.5382 20 17 -0.7096 -10.6937 -6.5805 21 6 -0.5528 -9.4812 -4.1654 22 6 -0.4576 -8.3826 -3.3341 23 6 -0.4151 -3.8891 -1.2318 24 6 0.3712 -2.5796 -1.2491 25 1 -0.4850 0.8399 -0.0004 26 1 0.6247 -2.5567 0.8906 27 1 2.8877 -3.5910 0.8800 28 1 2.8571 -3.6196 -0.8998 29 1 0.9367 -5.0708 0.9794 30 1 2.1740 -5.8189 -0.0609 31 1 -0.7939 -5.1875 -3.2337 32 1 -0.3869 -5.9454 -5.6795 33 1 -0.5585 -7.9088 -7.1534 34 1 -0.5989 -10.4745 -3.7439 35 1 -0.4296 -8.5163 -2.2627 36 1 -0.9646 -3.9960 -2.1671 37 1 -1.1130 -3.8820 -0.3945 38 1 -0.3212 -1.7380 -1.2612 39 1 0.9996 -2.5472 -2.1391 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781546912.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:20 Heat of formation + Delta-G solvation = 27.806337 kcal Electronic energy + Delta-G solvation = -22289.449204 eV Core-core repulsion = 18962.337663 eV Total energy + Delta-G solvation = -3327.111541 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.56635 -40.22858 -38.06116 -37.08612 -35.52001 -33.33547 -32.23907 -32.11251 -30.40887 -28.31447 -25.97005 -24.58744 -24.13783 -23.44462 -22.48341 -20.88168 -19.65163 -19.11585 -18.32073 -17.75793 -17.15161 -16.58898 -16.47652 -15.87849 -15.73345 -15.17136 -15.01975 -14.70473 -14.61453 -14.51304 -14.38582 -13.71987 -13.54179 -13.24045 -13.18507 -12.87268 -12.59630 -12.51303 -12.47964 -12.32322 -12.17826 -12.02353 -11.79143 -11.53115 -11.14241 -10.95972 -10.53938 -10.41388 -10.09923 -9.28107 -8.93969 -8.31429 -8.13067 -6.24986 -0.23453 0.35507 0.48261 0.77413 1.17010 1.39272 1.43346 1.45915 1.50841 2.07601 2.41448 2.64983 3.14678 3.73556 3.79914 3.93637 4.03456 4.15002 4.23625 4.24535 4.32837 4.40767 4.44552 4.55417 4.77611 4.80468 4.87888 5.00247 5.03408 5.10703 5.17941 5.24341 5.28864 5.33527 5.49187 5.61054 5.62811 5.86136 5.91467 6.05749 6.19807 6.33786 6.83629 7.43434 8.90305 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.027831 B = 0.002619 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.842721 B =10689.326490 C =11241.750536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.022 3.978 3 Si 0.944 3.056 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.533 4.533 8 H 0.047 0.953 9 C 0.044 3.956 10 C -0.112 4.112 11 C 0.108 3.892 12 N -0.538 5.538 13 C 0.575 3.425 14 S -0.710 6.710 15 N -0.625 5.625 16 C 0.126 3.874 17 C -0.111 4.111 18 C -0.102 4.102 19 C -0.040 4.040 20 Cl -0.069 7.069 21 C -0.107 4.107 22 C -0.074 4.074 23 C 0.099 3.901 24 C -0.115 4.115 25 H 0.262 0.738 26 H 0.010 0.990 27 H 0.073 0.927 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.112 0.888 31 H 0.421 0.579 32 H 0.157 0.843 33 H 0.160 0.840 34 H 0.144 0.856 35 H 0.136 0.864 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.611 -13.411 -10.765 18.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.178 4.178 3 Si 0.771 3.229 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.571 4.571 8 H 0.065 0.935 9 C 0.025 3.975 10 C -0.150 4.150 11 C -0.014 4.014 12 N -0.241 5.241 13 C 0.213 3.787 14 S -0.579 6.579 15 N -0.254 5.254 16 C 0.032 3.968 17 C -0.132 4.132 18 C -0.121 4.121 19 C -0.068 4.068 20 Cl -0.040 7.040 21 C -0.128 4.128 22 C -0.096 4.096 23 C -0.025 4.025 24 C -0.154 4.154 25 H 0.072 0.928 26 H 0.028 0.972 27 H 0.091 0.909 28 H 0.063 0.937 29 H 0.106 0.894 30 H 0.130 0.870 31 H 0.265 0.735 32 H 0.174 0.826 33 H 0.177 0.823 34 H 0.162 0.838 35 H 0.153 0.847 36 H 0.116 0.884 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.122 -14.142 -10.552 18.677 hybrid contribution -0.100 2.142 0.007 2.145 sum -6.221 -12.000 -10.545 17.144 Atomic orbital electron populations 1.69886 1.06626 1.27232 1.51221 1.25551 0.95666 1.01715 0.94836 0.85769 0.78845 0.80231 0.78080 1.20396 1.20956 1.19903 1.21503 0.92967 0.92096 1.50518 0.93456 1.18648 0.93072 0.92021 0.93740 1.21871 0.98354 0.93422 1.01391 1.22337 0.92008 1.00299 0.86757 1.47627 1.34036 1.17739 1.24728 1.21951 0.84990 0.89559 0.82156 1.93351 1.50886 1.25982 1.87664 1.42280 1.43612 1.17135 1.22385 1.17685 1.03280 0.86100 0.89695 1.21069 1.01307 1.00798 0.90006 1.21019 1.00293 0.89361 1.01444 1.21080 1.05479 0.88949 0.91272 1.98366 1.96491 1.42535 1.66637 1.20952 1.00863 0.99800 0.91140 1.21289 0.95932 0.90890 1.01512 1.22248 0.91438 0.85401 1.03416 1.21751 0.99615 0.95318 0.98672 0.92835 0.97202 0.90894 0.93730 0.89433 0.86962 0.73488 0.82588 0.82273 0.83807 0.84668 0.88419 0.89061 0.89248 0.94832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.86 11.31 21.45 0.24 -46.62 16 2 C 0.02 1.09 5.30 84.65 0.45 1.54 16 3 Si 0.94 40.77 29.54 68.60 2.03 42.80 16 4 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.53 -26.76 8.56 25.60 0.22 -26.54 16 8 H 0.05 2.41 7.74 -2.91 -0.02 2.39 16 9 C 0.04 1.89 2.07 -11.51 -0.02 1.87 16 10 C -0.11 -4.14 5.30 30.67 0.16 -3.97 16 11 C 0.11 3.44 6.30 86.36 0.54 3.99 16 12 N -0.54 -15.92 2.98 -707.76 -2.11 -18.03 16 13 C 0.58 16.98 7.47 179.05 1.34 18.32 16 14 S -0.71 -25.60 24.27 -56.49 -1.37 -26.97 16 15 N -0.62 -14.33 5.22 -189.95 -0.99 -15.32 16 16 C 0.13 2.84 5.93 38.15 0.23 3.07 16 17 C -0.11 -1.97 9.97 22.39 0.22 -1.75 16 18 C -0.10 -1.71 9.82 22.28 0.22 -1.49 16 19 C -0.04 -0.78 6.32 22.34 0.14 -0.64 16 20 Cl -0.07 -1.22 28.95 -2.72 -0.08 -1.29 16 21 C -0.11 -2.28 9.82 22.27 0.22 -2.06 16 22 C -0.07 -1.81 7.85 22.39 0.18 -1.63 16 23 C 0.10 2.76 6.40 86.22 0.55 3.31 16 24 C -0.11 -4.37 5.14 30.53 0.16 -4.22 16 25 H 0.26 12.99 8.31 -92.72 -0.77 12.22 16 26 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 28 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.11 3.75 6.00 -3.25 -0.02 3.73 16 31 H 0.42 7.44 6.33 -92.71 -0.59 6.85 16 32 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 33 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 34 H 0.14 2.70 8.06 -2.91 -0.02 2.67 16 35 H 0.14 3.80 6.20 -5.60 -0.03 3.77 16 36 H 0.10 2.02 5.58 -2.39 -0.01 2.01 16 37 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.09 3.89 6.03 -2.39 -0.01 3.88 16 39 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -59.51 339.06 2.79 -56.72 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 0.47 Total: 18.92 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: 4.60 Total: -10.20 kcal Atomic # 7 Polarization: -77.11 SS G_CDS: -2.86 Total: -79.97 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Atomic # 16 Polarization: -25.60 SS G_CDS: -1.37 Total: -26.97 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.08 Total: -1.29 kcal Total: -59.51 2.79 -56.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781546912.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.522 kcal (2) G-P(sol) polarization free energy of solvation -59.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds