Wall clock time and date at job start Tue Mar 31 2020 14:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00008 * 2 1 4 4 H 1.48510 * 109.46967 * 269.99942 * 3 2 1 5 5 H 1.48498 * 109.47027 * 29.99939 * 3 2 1 6 6 H 1.48493 * 109.47384 * 150.00186 * 3 2 1 7 7 C 1.37880 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99583 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00047 * 359.97438 * 7 2 1 10 10 C 1.53041 * 109.45905 * 180.02562 * 9 7 2 11 11 C 1.53190 * 109.31303 * 178.62862 * 10 9 7 12 12 N 1.46934 * 108.77319 * 54.63648 * 11 10 9 13 13 C 1.34778 * 120.62903 * 126.36962 * 12 11 10 14 14 S 1.71205 * 119.99976 * 5.47824 * 13 12 11 15 15 N 1.34774 * 119.99967 * 185.47562 * 13 12 11 16 16 C 1.39884 * 120.00009 * 185.93233 * 15 13 12 17 17 C 1.38905 * 120.06589 * 40.93177 * 16 15 13 18 18 C 1.38100 * 119.95599 * 179.97438 * 17 16 15 19 19 C 1.38281 * 120.08267 * 359.96981 * 18 17 16 20 20 C 1.38386 * 120.13336 * 0.02562 * 19 18 17 21 21 Cl 1.73597 * 119.97963 * 179.74107 * 20 19 18 22 22 C 1.38255 * 120.03980 * 0.02562 * 20 19 18 23 23 C 1.46922 * 118.73989 * 306.64100 * 12 11 10 24 24 C 1.52765 * 109.00656 * 53.30734 * 23 12 11 25 25 H 0.97001 * 119.99986 * 0.02562 * 1 2 3 26 26 H 1.08992 * 109.46051 * 299.97694 * 9 7 2 27 27 H 1.09002 * 109.49974 * 58.67843 * 10 9 7 28 28 H 1.08997 * 109.52719 * 298.59642 * 10 9 7 29 29 H 1.08997 * 109.58927 * 294.84866 * 11 10 9 30 30 H 1.09000 * 109.70892 * 174.48947 * 11 10 9 31 31 H 0.97007 * 119.99800 * 5.93286 * 15 13 12 32 32 H 1.07999 * 120.02535 * 359.95797 * 17 16 15 33 33 H 1.08001 * 119.96055 * 180.02562 * 18 17 16 34 34 H 1.08005 * 119.93603 * 180.02562 * 19 18 17 35 35 H 1.08000 * 120.03601 * 179.97438 * 22 20 19 36 36 H 1.08992 * 109.58730 * 173.14639 * 23 12 11 37 37 H 1.08998 * 109.58992 * 293.57424 * 23 12 11 38 38 H 1.09000 * 109.56557 * 185.55073 * 24 23 12 39 39 H 1.09009 * 109.38101 * 65.51945 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2458 -3.6621 -0.0005 11 6 1.4768 -4.9866 0.0341 12 7 0.5226 -5.0087 -1.0830 13 6 0.5125 -6.0344 -1.9573 14 16 1.5199 -7.3935 -1.6941 15 7 -0.2906 -5.9902 -3.0387 16 6 -0.3946 -7.1039 -3.8787 17 6 -0.4593 -8.3811 -3.3362 18 6 -0.5625 -9.4790 -4.1675 19 6 -0.6021 -9.3085 -5.5392 20 6 -0.5380 -8.0377 -6.0835 21 17 -0.5813 -7.8288 -7.8063 22 6 -0.4336 -6.9350 -5.2562 23 6 -0.4162 -3.8885 -1.2324 24 6 0.3703 -2.5790 -1.2495 25 1 -0.4850 0.8401 -0.0004 26 1 0.6252 -2.5571 0.8899 27 1 2.8882 -3.5915 0.8772 28 1 2.8563 -3.6194 -0.9025 29 1 0.9372 -5.0713 0.9773 30 1 2.1737 -5.8190 -0.0642 31 1 -0.7965 -5.1860 -3.2346 32 1 -0.4287 -8.5154 -2.2650 33 1 -0.6132 -10.4719 -3.7458 34 1 -0.6833 -10.1688 -6.1872 35 1 -0.3831 -5.9433 -5.6810 36 1 -0.9663 -3.9950 -2.1673 37 1 -1.1134 -3.8817 -0.3946 38 1 -0.3222 -1.7374 -1.2608 39 1 0.9980 -2.5456 -2.1401 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781547635.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:21 Heat of formation + Delta-G solvation = 39.666050 kcal Electronic energy + Delta-G solvation = -22352.618249 eV Core-core repulsion = 19026.020984 eV Total energy + Delta-G solvation = -3326.597266 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.46515 -39.11184 -36.99750 -36.13209 -34.03558 -31.74392 -30.96984 -30.82355 -29.54820 -26.81562 -24.47242 -23.34029 -22.96380 -22.31895 -21.24765 -19.46775 -18.50436 -17.99833 -16.51490 -16.48370 -15.99441 -15.60486 -14.80234 -14.73136 -14.48371 -14.31189 -13.85892 -13.70402 -13.41837 -13.13310 -12.92538 -12.51374 -12.14755 -11.91038 -11.69051 -11.63266 -11.42276 -11.11466 -11.08100 -11.04113 -10.83384 -10.64537 -10.32367 -9.90489 -9.74201 -9.39865 -9.09733 -8.99094 -8.55948 -8.33114 -7.56326 -6.97915 -6.21542 -4.27766 0.83549 1.10658 1.61675 1.90384 2.05967 2.68581 3.18011 3.22065 3.25961 3.29384 3.53612 4.27354 4.64332 4.86022 4.91427 5.03809 5.10294 5.13920 5.26937 5.45067 5.51207 5.53862 5.66399 5.81324 5.88225 5.97260 6.05001 6.10406 6.25767 6.31843 6.37949 6.49024 6.65011 6.74449 6.79099 6.96975 6.98643 7.29687 7.45001 7.64994 7.81067 8.18564 8.75765 9.38894 10.84367 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.018506 B = 0.002952 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.624118 B = 9481.612145 C =10475.731357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.062 3.938 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.513 4.513 8 H 0.057 0.943 9 C 0.047 3.953 10 C -0.123 4.123 11 C 0.098 3.902 12 N -0.536 5.536 13 C 0.562 3.438 14 S -0.656 6.656 15 N -0.643 5.643 16 C 0.155 3.845 17 C -0.069 4.069 18 C -0.101 4.101 19 C -0.112 4.112 20 C -0.030 4.030 21 Cl -0.074 7.074 22 C -0.123 4.123 23 C 0.088 3.912 24 C -0.125 4.125 25 H 0.262 0.738 26 H 0.031 0.969 27 H 0.071 0.929 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.116 0.884 31 H 0.409 0.591 32 H 0.151 0.849 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.061 0.939 37 H 0.084 0.916 38 H 0.113 0.887 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.882 -13.718 -8.882 17.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.551 4.551 8 H 0.076 0.924 9 C 0.029 3.971 10 C -0.162 4.162 11 C -0.024 4.024 12 N -0.239 5.239 13 C 0.202 3.798 14 S -0.524 6.524 15 N -0.273 5.273 16 C 0.061 3.939 17 C -0.091 4.091 18 C -0.121 4.121 19 C -0.132 4.132 20 C -0.057 4.057 21 Cl -0.045 7.045 22 C -0.145 4.145 23 C -0.036 4.036 24 C -0.164 4.164 25 H 0.072 0.928 26 H 0.049 0.951 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.134 0.866 31 H 0.250 0.750 32 H 0.168 0.832 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.131 0.869 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.358 -14.292 -8.694 17.565 hybrid contribution -0.307 2.293 -0.517 2.371 sum -5.665 -11.999 -9.210 16.152 Atomic orbital electron populations 1.69795 1.05918 1.26770 1.50725 1.24965 0.94913 0.99260 0.94787 0.86569 0.79967 0.83190 0.78191 1.20665 1.21150 1.19803 1.21163 0.93096 0.90274 1.50588 0.92428 1.18674 0.92648 0.92221 0.93588 1.22051 0.98962 0.93222 1.01920 1.22528 0.91859 1.02126 0.85860 1.47745 1.33873 1.17526 1.24768 1.22286 0.85158 0.90653 0.81677 1.93205 1.48622 1.23888 1.86646 1.42315 1.44854 1.16524 1.23586 1.17191 1.01937 0.86648 0.88143 1.21552 0.94545 0.90484 1.02541 1.20918 0.99995 0.99048 0.92106 1.21055 1.01020 0.95401 0.95688 1.20438 1.06564 0.94423 0.84319 1.98365 1.97041 1.97707 1.11364 1.20682 1.03768 0.98947 0.91056 1.22369 0.92192 0.87962 1.01092 1.22048 1.00328 0.93599 1.00410 0.92800 0.95110 0.91002 0.92547 0.90581 0.86588 0.74971 0.83159 0.84652 0.85012 0.84866 0.92030 0.89757 0.86919 0.93858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.00 11.31 55.43 0.63 -22.37 16 2 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 3 Si 0.89 19.96 29.54 -169.99 -5.02 14.94 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.51 -12.80 8.56 -34.44 -0.29 -13.09 16 8 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.05 1.02 2.07 -91.73 -0.19 0.83 16 10 C -0.12 -2.28 5.30 -26.61 -0.14 -2.42 16 11 C 0.10 1.60 6.30 -3.71 -0.02 1.57 16 12 N -0.54 -8.36 2.98 -175.05 -0.52 -8.88 16 13 C 0.56 8.75 7.47 -86.92 -0.65 8.10 16 14 S -0.66 -11.89 24.26 -107.50 -2.61 -14.50 16 15 N -0.64 -8.28 5.21 -11.41 -0.06 -8.34 16 16 C 0.16 1.95 5.93 -83.71 -0.50 1.45 16 17 C -0.07 -0.86 7.85 -39.39 -0.31 -1.16 16 18 C -0.10 -1.03 10.04 -39.62 -0.40 -1.43 16 19 C -0.11 -1.10 9.83 -39.51 -0.39 -1.49 16 20 C -0.03 -0.32 6.32 -39.52 -0.25 -0.57 16 21 Cl -0.07 -0.74 28.95 -51.86 -1.50 -2.24 16 22 C -0.12 -1.40 9.75 -39.35 -0.38 -1.79 16 23 C 0.09 1.33 6.40 -3.93 -0.03 1.30 16 24 C -0.13 -2.44 5.14 -26.83 -0.14 -2.58 16 25 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.12 1.96 6.00 -50.57 -0.30 1.66 16 31 H 0.41 4.43 6.33 -40.82 -0.26 4.17 16 32 H 0.15 2.07 6.19 -48.04 -0.30 1.77 16 33 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 34 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 35 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.06 0.75 5.58 -51.93 -0.29 0.46 16 37 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.11 2.48 6.03 -51.93 -0.31 2.17 16 39 H 0.04 0.87 8.14 -51.92 -0.42 0.45 16 LS Contribution 339.04 15.07 5.11 5.11 Total: -1.00 -27.57 339.04 -12.56 -40.13 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -4.81 Total: 5.95 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -3.78 Total: -9.80 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.05 Total: -39.59 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Atomic # 16 Polarization: -11.89 SS G_CDS: -2.61 Total: -14.50 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.57 -12.56 -40.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781547635.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.796 kcal (2) G-P(sol) polarization free energy of solvation -27.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds