Wall clock time and date at job start Tue Mar 31 2020 14:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00008 * 2 1 4 4 H 1.48510 * 109.46967 * 269.99942 * 3 2 1 5 5 H 1.48498 * 109.47027 * 29.99939 * 3 2 1 6 6 H 1.48493 * 109.47384 * 150.00186 * 3 2 1 7 7 C 1.37880 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99583 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00047 * 359.97438 * 7 2 1 10 10 C 1.53041 * 109.45905 * 180.02562 * 9 7 2 11 11 C 1.53190 * 109.31303 * 178.62862 * 10 9 7 12 12 N 1.46934 * 108.77319 * 54.63648 * 11 10 9 13 13 C 1.34778 * 120.62903 * 126.36962 * 12 11 10 14 14 S 1.71205 * 119.99976 * 5.47824 * 13 12 11 15 15 N 1.34774 * 119.99967 * 185.47562 * 13 12 11 16 16 C 1.39884 * 120.00009 * 185.93233 * 15 13 12 17 17 C 1.38905 * 120.06589 * 40.93177 * 16 15 13 18 18 C 1.38100 * 119.95599 * 179.97438 * 17 16 15 19 19 C 1.38281 * 120.08267 * 359.96981 * 18 17 16 20 20 C 1.38386 * 120.13336 * 0.02562 * 19 18 17 21 21 Cl 1.73597 * 119.97963 * 179.74107 * 20 19 18 22 22 C 1.38255 * 120.03980 * 0.02562 * 20 19 18 23 23 C 1.46922 * 118.73989 * 306.64100 * 12 11 10 24 24 C 1.52765 * 109.00656 * 53.30734 * 23 12 11 25 25 H 0.97001 * 119.99986 * 0.02562 * 1 2 3 26 26 H 1.08992 * 109.46051 * 299.97694 * 9 7 2 27 27 H 1.09002 * 109.49974 * 58.67843 * 10 9 7 28 28 H 1.08997 * 109.52719 * 298.59642 * 10 9 7 29 29 H 1.08997 * 109.58927 * 294.84866 * 11 10 9 30 30 H 1.09000 * 109.70892 * 174.48947 * 11 10 9 31 31 H 0.97007 * 119.99800 * 5.93286 * 15 13 12 32 32 H 1.07999 * 120.02535 * 359.95797 * 17 16 15 33 33 H 1.08001 * 119.96055 * 180.02562 * 18 17 16 34 34 H 1.08005 * 119.93603 * 180.02562 * 19 18 17 35 35 H 1.08000 * 120.03601 * 179.97438 * 22 20 19 36 36 H 1.08992 * 109.58730 * 173.14639 * 23 12 11 37 37 H 1.08998 * 109.58992 * 293.57424 * 23 12 11 38 38 H 1.09000 * 109.56557 * 185.55073 * 24 23 12 39 39 H 1.09009 * 109.38101 * 65.51945 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2458 -3.6621 -0.0005 11 6 1.4768 -4.9866 0.0341 12 7 0.5226 -5.0087 -1.0830 13 6 0.5125 -6.0344 -1.9573 14 16 1.5199 -7.3935 -1.6941 15 7 -0.2906 -5.9902 -3.0387 16 6 -0.3946 -7.1039 -3.8787 17 6 -0.4593 -8.3811 -3.3362 18 6 -0.5625 -9.4790 -4.1675 19 6 -0.6021 -9.3085 -5.5392 20 6 -0.5380 -8.0377 -6.0835 21 17 -0.5813 -7.8288 -7.8063 22 6 -0.4336 -6.9350 -5.2562 23 6 -0.4162 -3.8885 -1.2324 24 6 0.3703 -2.5790 -1.2495 25 1 -0.4850 0.8401 -0.0004 26 1 0.6252 -2.5571 0.8899 27 1 2.8882 -3.5915 0.8772 28 1 2.8563 -3.6194 -0.9025 29 1 0.9372 -5.0713 0.9773 30 1 2.1737 -5.8190 -0.0642 31 1 -0.7965 -5.1860 -3.2346 32 1 -0.4287 -8.5154 -2.2650 33 1 -0.6132 -10.4719 -3.7458 34 1 -0.6833 -10.1688 -6.1872 35 1 -0.3831 -5.9433 -5.6810 36 1 -0.9663 -3.9950 -2.1673 37 1 -1.1134 -3.8817 -0.3946 38 1 -0.3222 -1.7374 -1.2608 39 1 0.9980 -2.5456 -2.1401 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781547635.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:20 Heat of formation + Delta-G solvation = 28.296545 kcal Electronic energy + Delta-G solvation = -22353.111268 eV Core-core repulsion = 19026.020984 eV Total energy + Delta-G solvation = -3327.090284 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.57779 -40.23071 -38.03819 -37.15568 -35.56270 -33.37256 -32.23737 -31.85025 -30.58849 -28.35833 -25.97325 -24.62817 -24.01530 -23.53399 -22.46262 -20.88759 -19.68662 -19.16474 -18.32596 -17.54804 -17.05375 -16.61111 -16.52500 -15.89669 -15.76094 -15.40816 -15.02825 -14.74957 -14.65935 -14.61069 -14.39482 -13.69661 -13.49702 -13.24346 -12.88131 -12.85315 -12.59931 -12.50907 -12.49347 -12.33840 -12.18728 -12.03178 -11.90841 -11.54097 -11.16311 -10.98135 -10.61790 -10.43533 -9.87593 -9.39828 -8.93912 -8.30314 -8.13388 -6.25360 -0.18116 0.24750 0.49064 0.78188 1.08524 1.39011 1.42949 1.49653 1.50739 2.07266 2.41129 2.66886 3.14304 3.72516 3.82138 4.01487 4.09115 4.14602 4.15047 4.23022 4.30398 4.40396 4.43837 4.52281 4.70116 4.78163 4.85483 4.98034 5.04830 5.13159 5.19586 5.22711 5.31125 5.42349 5.50892 5.59680 5.62410 5.88231 5.91080 6.04936 6.17205 6.33376 6.83232 7.43030 8.89867 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.018506 B = 0.002952 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.624118 B = 9481.612145 C =10475.731357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.022 3.978 3 Si 0.944 3.056 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.533 4.533 8 H 0.047 0.953 9 C 0.044 3.956 10 C -0.112 4.112 11 C 0.108 3.892 12 N -0.538 5.538 13 C 0.575 3.425 14 S -0.705 6.705 15 N -0.626 5.626 16 C 0.133 3.867 17 C -0.081 4.081 18 C -0.098 4.098 19 C -0.105 4.105 20 C -0.037 4.037 21 Cl -0.066 7.066 22 C -0.123 4.123 23 C 0.099 3.901 24 C -0.115 4.115 25 H 0.262 0.738 26 H 0.011 0.989 27 H 0.073 0.927 28 H 0.043 0.957 29 H 0.089 0.911 30 H 0.113 0.887 31 H 0.420 0.580 32 H 0.135 0.865 33 H 0.159 0.841 34 H 0.157 0.843 35 H 0.143 0.857 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.620 -14.648 -10.133 19.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.178 4.178 3 Si 0.771 3.229 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.571 4.571 8 H 0.065 0.935 9 C 0.026 3.974 10 C -0.151 4.151 11 C -0.014 4.014 12 N -0.241 5.241 13 C 0.213 3.787 14 S -0.574 6.574 15 N -0.256 5.256 16 C 0.040 3.960 17 C -0.103 4.103 18 C -0.117 4.117 19 C -0.124 4.124 20 C -0.065 4.065 21 Cl -0.038 7.038 22 C -0.145 4.145 23 C -0.025 4.025 24 C -0.154 4.154 25 H 0.072 0.928 26 H 0.029 0.971 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.131 0.869 31 H 0.263 0.737 32 H 0.153 0.847 33 H 0.176 0.824 34 H 0.174 0.826 35 H 0.160 0.840 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -6.121 -15.232 -9.983 19.213 hybrid contribution -0.103 2.548 -0.211 2.558 sum -6.224 -12.684 -10.193 17.422 Atomic orbital electron populations 1.69891 1.06631 1.27215 1.51190 1.25558 0.95671 1.01731 0.94822 0.85764 0.78868 0.80213 0.78051 1.20470 1.20927 1.19844 1.21506 0.92967 0.92117 1.50556 0.93462 1.18638 0.93053 0.92028 0.93689 1.21873 0.98353 0.93447 1.01378 1.22350 0.91971 1.00294 0.86758 1.47628 1.34017 1.17702 1.24776 1.21966 0.84921 0.89703 0.82085 1.93293 1.50653 1.25837 1.87576 1.42242 1.43690 1.17142 1.22477 1.17339 1.03643 0.86504 0.88542 1.21533 0.95404 0.91223 1.02125 1.21193 0.98859 0.99509 0.92183 1.21365 0.99308 0.95891 0.95806 1.20601 1.06457 0.94722 0.84732 1.98371 1.96995 1.97717 1.10678 1.20783 1.03347 0.99755 0.90605 1.22238 0.91470 0.85444 1.03352 1.21755 0.99620 0.95315 0.98690 0.92849 0.97092 0.90813 0.93822 0.89320 0.86887 0.73681 0.84724 0.82351 0.82553 0.83968 0.88651 0.88936 0.89286 0.94992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.16 11.31 21.45 0.24 -46.91 16 2 C 0.02 1.09 5.30 84.66 0.45 1.54 16 3 Si 0.94 41.06 29.54 68.60 2.03 43.09 16 4 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.53 -26.98 8.56 25.60 0.22 -26.76 16 8 H 0.05 2.42 7.74 -2.91 -0.02 2.40 16 9 C 0.04 1.94 2.07 -11.52 -0.02 1.91 16 10 C -0.11 -4.17 5.30 30.67 0.16 -4.00 16 11 C 0.11 3.46 6.30 86.36 0.54 4.00 16 12 N -0.54 -16.12 2.98 -707.74 -2.11 -18.23 16 13 C 0.57 17.21 7.47 179.05 1.34 18.55 16 14 S -0.71 -25.23 24.26 -56.49 -1.37 -26.60 16 15 N -0.63 -15.06 5.21 -190.00 -0.99 -16.05 16 16 C 0.13 3.15 5.93 38.16 0.23 3.37 16 17 C -0.08 -1.90 7.85 22.40 0.18 -1.72 16 18 C -0.10 -1.79 10.04 22.25 0.22 -1.56 16 19 C -0.10 -1.77 9.83 22.32 0.22 -1.55 16 20 C -0.04 -0.72 6.32 22.31 0.14 -0.58 16 21 Cl -0.07 -1.19 28.95 -2.72 -0.08 -1.27 16 22 C -0.12 -2.58 9.75 22.42 0.22 -2.36 16 23 C 0.10 2.83 6.40 86.22 0.55 3.38 16 24 C -0.11 -4.46 5.14 30.53 0.16 -4.30 16 25 H 0.26 13.07 8.31 -92.71 -0.77 12.30 16 26 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 28 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.11 3.77 6.00 -3.25 -0.02 3.75 16 31 H 0.42 8.10 6.33 -92.70 -0.59 7.51 16 32 H 0.14 3.64 6.19 -5.74 -0.04 3.60 16 33 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 34 H 0.16 1.86 8.06 -2.91 -0.02 1.83 16 35 H 0.14 2.64 8.06 -2.91 -0.02 2.61 16 36 H 0.10 2.08 5.58 -2.39 -0.01 2.07 16 37 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.09 3.94 6.03 -2.39 -0.01 3.92 16 39 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 Total: -1.00 -59.35 339.04 2.79 -56.55 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.47 Total: 19.51 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: 4.60 Total: -10.09 kcal Atomic # 7 Polarization: -78.33 SS G_CDS: -2.86 Total: -81.19 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Atomic # 16 Polarization: -25.23 SS G_CDS: -1.37 Total: -26.60 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.27 kcal Total: -59.35 2.79 -56.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781547635.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.850 kcal (2) G-P(sol) polarization free energy of solvation -59.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds