Wall clock time and date at job start Tue Mar 31 2020 14:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39745 * 120.04613 * 72.41752 * 3 2 1 5 5 C 1.37602 * 120.06026 * 179.97438 * 4 3 2 6 6 C 1.39750 * 120.15218 * 359.97438 * 5 4 3 7 7 C 1.47896 * 119.95777 * 180.02562 * 6 5 4 8 8 O 1.21555 * 120.00560 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99908 * 0.02562 * 7 6 5 10 10 C 1.39836 * 119.99839 * 175.47945 * 9 7 6 11 11 C 1.38989 * 120.03300 * 214.85849 * 10 9 7 12 12 C 1.38154 * 120.05919 * 179.69903 * 11 10 9 13 13 C 1.38170 * 120.14455 * 0.59792 * 12 11 10 14 14 C 1.38914 * 120.07211 * 359.68434 * 13 12 11 15 15 O 1.35758 * 120.03399 * 180.02562 * 14 13 12 16 16 C 1.34833 * 116.99578 * 5.36469 * 15 14 13 17 17 H 1.08000 * 120.00502 * 354.97170 * 16 15 14 18 18 C 1.38652 * 119.99511 * 174.96506 * 16 15 14 19 19 N 1.31559 * 120.00517 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99824 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46836 * 90.00038 * 20 18 16 22 22 H 1.48491 * 109.47165 * 210.00363 * 20 18 16 23 23 H 1.48500 * 109.46862 * 330.00153 * 20 18 16 24 24 C 1.38735 * 120.04194 * 35.13442 * 10 9 7 25 25 C 1.39425 * 120.08984 * 0.05279 * 6 5 4 26 26 C 1.38449 * 119.93362 * 359.92839 * 25 6 5 27 27 O 1.35734 * 120.07342 * 180.32045 * 26 25 6 28 28 H 1.07998 * 119.97319 * 359.97306 * 4 3 2 29 29 H 1.08001 * 119.92687 * 180.02562 * 5 4 3 30 30 H 0.96995 * 120.00003 * 355.47542 * 9 7 6 31 31 H 1.07997 * 119.97001 * 359.97438 * 11 10 9 32 32 H 1.07998 * 119.92928 * 180.30449 * 12 11 10 33 33 H 1.08000 * 119.96882 * 179.70040 * 13 12 11 34 34 H 0.96993 * 120.00359 * 179.97438 * 19 18 16 35 35 H 1.08005 * 120.06744 * 359.97438 * 24 10 9 36 36 H 1.07995 * 120.03119 * 179.97438 * 25 6 5 37 37 H 0.96696 * 114.00037 * 269.73012 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2678 -0.3645 -1.1532 5 6 4.6438 -0.3634 -1.1536 6 6 5.3459 0.0029 -0.0022 7 6 6.8249 0.0030 -0.0076 8 8 7.4364 0.3210 0.9936 9 7 7.4947 -0.3495 -1.1228 10 6 8.8896 -0.2590 -1.1586 11 6 9.5336 0.0963 -2.3379 12 6 10.9114 0.1920 -2.3723 13 6 11.6541 -0.0770 -1.2386 14 6 11.0167 -0.4383 -0.0584 15 8 11.7472 -0.7019 1.0552 16 6 13.0763 -0.4875 0.9803 17 1 13.5249 -0.2003 0.0408 18 6 13.8670 -0.6357 2.1095 19 7 13.3207 -0.9859 3.2539 20 14 15.7083 -0.3380 2.0060 21 1 15.9959 1.0898 2.2958 22 1 16.4048 -1.1947 2.9989 23 1 16.1877 -0.6723 0.6409 24 6 9.6327 -0.5292 -0.0186 25 6 4.6540 0.3677 1.1520 26 6 3.2696 0.3684 1.1564 27 8 2.5931 0.7293 2.2765 28 1 2.7283 -0.6477 -2.0448 29 1 5.1825 -0.6456 -2.0462 30 1 7.0091 -0.6661 -1.9005 31 1 8.9562 0.3021 -3.2271 32 1 11.4094 0.4730 -3.2885 33 1 12.7313 -0.0060 -1.2699 34 1 13.8739 -1.0899 4.0438 35 1 9.1348 -0.8095 0.8980 36 1 5.1976 0.6502 2.0414 37 1 2.3940 -0.0074 2.8702 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785408206.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:03 Heat of formation + Delta-G solvation = -7.756725 kcal Electronic energy + Delta-G solvation = -24786.365435 eV Core-core repulsion = 20881.558648 eV Total energy + Delta-G solvation = -3904.806787 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.96519 -39.87491 -38.65618 -37.23090 -36.83874 -36.47391 -34.29994 -32.28055 -32.08671 -30.63694 -29.50907 -28.50718 -25.62985 -25.15240 -23.26722 -22.49789 -21.51656 -20.69307 -19.80168 -18.65009 -18.37088 -17.52655 -17.03567 -16.49258 -15.64971 -15.52670 -15.20631 -15.10213 -14.89026 -14.55254 -14.26079 -14.14703 -14.05285 -13.79045 -13.58473 -13.34279 -12.97153 -12.89644 -12.54929 -12.50682 -12.20859 -11.78463 -11.58039 -11.33305 -11.25955 -11.04178 -10.84069 -10.47214 -10.01620 -9.80254 -9.58006 -9.33877 -9.26015 -8.83902 -7.78430 -7.23787 -6.44186 -4.03461 -0.15783 0.64430 1.85741 2.21095 2.23661 2.30880 2.88049 2.98256 3.13111 3.14848 3.18881 3.31059 3.37009 3.57131 3.96707 4.21187 4.35925 4.49500 4.56048 4.73778 4.90924 5.09736 5.25358 5.28805 5.48935 5.56856 5.59670 5.68829 5.76267 5.97179 6.04362 6.14506 6.32714 6.59278 6.78527 6.97339 6.99460 7.03072 7.05651 7.30895 7.42710 7.54104 7.71797 8.00167 8.13901 9.00635 9.70837 10.73526 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.023374 B = 0.002367 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.613963 B =11826.465889 C =12893.960610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C 0.257 3.743 3 C -0.038 4.038 4 C -0.060 4.060 5 C -0.099 4.099 6 C -0.078 4.078 7 C 0.545 3.455 8 O -0.494 6.494 9 N -0.659 5.659 10 C 0.171 3.829 11 C -0.234 4.234 12 C -0.058 4.058 13 C -0.243 4.243 14 C 0.166 3.834 15 O -0.172 6.172 16 C -0.392 4.392 17 H 0.093 0.907 18 C 0.039 3.961 19 N -0.859 5.859 20 Si 0.942 3.058 21 H -0.273 1.273 22 H -0.278 1.278 23 H -0.267 1.267 24 C -0.185 4.185 25 C -0.086 4.086 26 C 0.153 3.847 27 O -0.488 6.488 28 H 0.145 0.855 29 H 0.142 0.858 30 H 0.406 0.594 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.128 0.872 34 H 0.270 0.730 35 H 0.135 0.865 36 H 0.158 0.842 37 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.705 -0.269 -9.923 19.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.083 5.083 2 C -0.059 4.059 3 C -0.042 4.042 4 C -0.080 4.080 5 C -0.118 4.118 6 C -0.082 4.082 7 C 0.332 3.668 8 O -0.368 6.368 9 N -0.305 5.305 10 C 0.078 3.922 11 C -0.255 4.255 12 C -0.077 4.077 13 C -0.263 4.263 14 C 0.111 3.889 15 O -0.075 6.075 16 C -0.468 4.468 17 H 0.111 0.889 18 C -0.166 4.166 19 N -0.494 5.494 20 Si 0.766 3.234 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.192 1.192 24 C -0.206 4.206 25 C -0.105 4.105 26 C 0.105 3.895 27 O -0.300 6.300 28 H 0.163 0.837 29 H 0.160 0.840 30 H 0.242 0.758 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.146 0.854 34 H 0.080 0.920 35 H 0.152 0.848 36 H 0.175 0.825 37 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -18.010 0.396 -8.924 20.103 hybrid contribution 1.069 -0.374 -0.305 1.172 sum -16.941 0.023 -9.229 19.292 Atomic orbital electron populations 1.81264 1.11879 1.08147 1.06964 1.25391 0.92348 0.94012 0.94102 1.16554 0.84948 1.06405 0.96328 1.21008 0.93777 0.96669 0.96582 1.21269 0.93788 0.98916 0.97785 1.20071 0.93343 1.00385 0.94426 1.18242 0.86694 0.78175 0.83720 1.90910 1.68608 1.45245 1.32066 1.43200 1.05989 1.65087 1.16202 1.17131 0.80426 0.99880 0.94748 1.20263 0.94785 1.13627 0.96790 1.20509 0.92884 0.97165 0.97157 1.21205 1.00810 1.10979 0.93292 1.19134 0.90781 0.91664 0.87352 1.83992 1.20465 1.72743 1.30303 1.21348 0.79341 1.48669 0.97470 0.88944 1.25311 1.00461 0.96567 0.94216 1.70047 1.36369 1.43069 0.99909 0.85702 0.80467 0.78624 0.78566 1.19856 1.20279 1.19178 1.20166 0.91123 1.10133 0.99226 1.21563 0.92336 0.97080 0.99495 1.18224 0.89401 0.95511 0.86376 1.84805 1.75931 1.37523 1.31697 0.83699 0.84005 0.75787 0.87274 0.86959 0.85397 0.91978 0.84766 0.82456 0.74109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.58 18.54 41.84 0.78 -3.80 16 2 C 0.26 2.31 14.85 -22.48 -0.33 1.97 16 3 C -0.04 -0.28 5.75 -106.69 -0.61 -0.89 16 4 C -0.06 -0.32 9.73 -39.25 -0.38 -0.70 16 5 C -0.10 -0.58 9.51 -39.25 -0.37 -0.95 16 6 C -0.08 -0.73 5.87 -104.94 -0.62 -1.35 16 7 C 0.55 7.44 7.61 -12.31 -0.09 7.34 16 8 O -0.49 -9.20 13.76 5.32 0.07 -9.13 16 9 N -0.66 -8.32 5.28 -10.72 -0.06 -8.37 16 10 C 0.17 2.94 6.29 -83.74 -0.53 2.41 16 11 C -0.23 -3.68 9.96 -39.33 -0.39 -4.07 16 12 C -0.06 -1.00 10.03 -39.64 -0.40 -1.40 16 13 C -0.24 -5.14 9.17 -39.36 -0.36 -5.50 16 14 C 0.17 4.02 6.64 -39.14 -0.26 3.76 16 15 O -0.17 -4.95 9.76 0.01 0.00 -4.95 16 16 C -0.39 -10.91 9.49 30.89 0.29 -10.62 16 17 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -25.31 13.67 55.48 0.76 -24.55 16 20 Si 0.94 20.39 29.55 -169.99 -5.02 15.36 16 21 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 24 C -0.19 -4.04 8.64 -39.20 -0.34 -4.38 16 25 C -0.09 -0.79 9.52 -39.06 -0.37 -1.16 16 26 C 0.15 1.21 6.70 -38.78 -0.26 0.95 16 27 O -0.49 -3.67 12.92 -18.91 -0.24 -3.91 16 28 H 0.15 0.40 8.06 -52.49 -0.42 -0.02 16 29 H 0.14 0.44 6.39 -52.49 -0.34 0.11 16 30 H 0.41 3.24 6.85 -40.82 -0.28 2.96 16 31 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 32 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 33 H 0.13 2.69 5.63 -52.49 -0.30 2.40 16 34 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.13 3.13 6.22 -52.48 -0.33 2.80 16 36 H 0.16 1.60 7.63 -52.49 -0.40 1.20 16 37 H 0.40 1.18 9.06 45.56 0.41 1.60 16 LS Contribution 339.53 15.07 5.12 5.12 Total: -1.00 -36.10 339.53 -5.62 -41.73 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -1.90 Total: 6.12 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -5.12 Total: -13.60 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 1.48 Total: -36.73 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.17 Total: -18.00 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.10 -5.62 -41.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785408206.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.972 kcal (2) G-P(sol) polarization free energy of solvation -36.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds