Wall clock time and date at job start Tue Mar 31 2020 14:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39745 * 120.04613 * 72.41752 * 3 2 1 5 5 C 1.37602 * 120.06026 * 179.97438 * 4 3 2 6 6 C 1.39750 * 120.15218 * 359.97438 * 5 4 3 7 7 C 1.47896 * 119.95777 * 180.02562 * 6 5 4 8 8 O 1.21555 * 120.00560 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99908 * 0.02562 * 7 6 5 10 10 C 1.39836 * 119.99839 * 175.47945 * 9 7 6 11 11 C 1.38989 * 120.03300 * 214.85849 * 10 9 7 12 12 C 1.38154 * 120.05919 * 179.69903 * 11 10 9 13 13 C 1.38170 * 120.14455 * 0.59792 * 12 11 10 14 14 C 1.38914 * 120.07211 * 359.68434 * 13 12 11 15 15 O 1.35758 * 120.03399 * 180.02562 * 14 13 12 16 16 C 1.34833 * 116.99578 * 5.36469 * 15 14 13 17 17 H 1.08000 * 120.00502 * 354.97170 * 16 15 14 18 18 C 1.38652 * 119.99511 * 174.96506 * 16 15 14 19 19 N 1.31559 * 120.00517 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99824 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46836 * 90.00038 * 20 18 16 22 22 H 1.48491 * 109.47165 * 210.00363 * 20 18 16 23 23 H 1.48500 * 109.46862 * 330.00153 * 20 18 16 24 24 C 1.38735 * 120.04194 * 35.13442 * 10 9 7 25 25 C 1.39425 * 120.08984 * 0.05279 * 6 5 4 26 26 C 1.38449 * 119.93362 * 359.92839 * 25 6 5 27 27 O 1.35734 * 120.07342 * 180.32045 * 26 25 6 28 28 H 1.07998 * 119.97319 * 359.97306 * 4 3 2 29 29 H 1.08001 * 119.92687 * 180.02562 * 5 4 3 30 30 H 0.96995 * 120.00003 * 355.47542 * 9 7 6 31 31 H 1.07997 * 119.97001 * 359.97438 * 11 10 9 32 32 H 1.07998 * 119.92928 * 180.30449 * 12 11 10 33 33 H 1.08000 * 119.96882 * 179.70040 * 13 12 11 34 34 H 0.96993 * 120.00359 * 179.97438 * 19 18 16 35 35 H 1.08005 * 120.06744 * 359.97438 * 24 10 9 36 36 H 1.07995 * 120.03119 * 179.97438 * 25 6 5 37 37 H 0.96696 * 114.00037 * 269.73012 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2678 -0.3645 -1.1532 5 6 4.6438 -0.3634 -1.1536 6 6 5.3459 0.0029 -0.0022 7 6 6.8249 0.0030 -0.0076 8 8 7.4364 0.3210 0.9936 9 7 7.4947 -0.3495 -1.1228 10 6 8.8896 -0.2590 -1.1586 11 6 9.5336 0.0963 -2.3379 12 6 10.9114 0.1920 -2.3723 13 6 11.6541 -0.0770 -1.2386 14 6 11.0167 -0.4383 -0.0584 15 8 11.7472 -0.7019 1.0552 16 6 13.0763 -0.4875 0.9803 17 1 13.5249 -0.2003 0.0408 18 6 13.8670 -0.6357 2.1095 19 7 13.3207 -0.9859 3.2539 20 14 15.7083 -0.3380 2.0060 21 1 15.9959 1.0898 2.2958 22 1 16.4048 -1.1947 2.9989 23 1 16.1877 -0.6723 0.6409 24 6 9.6327 -0.5292 -0.0186 25 6 4.6540 0.3677 1.1520 26 6 3.2696 0.3684 1.1564 27 8 2.5931 0.7293 2.2765 28 1 2.7283 -0.6477 -2.0448 29 1 5.1825 -0.6456 -2.0462 30 1 7.0091 -0.6661 -1.9005 31 1 8.9562 0.3021 -3.2271 32 1 11.4094 0.4730 -3.2885 33 1 12.7313 -0.0060 -1.2699 34 1 13.8739 -1.0899 4.0438 35 1 9.1348 -0.8095 0.8980 36 1 5.1976 0.6502 2.0414 37 1 2.3940 -0.0074 2.8702 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785408206.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:03 Heat of formation + Delta-G solvation = -35.367783 kcal Electronic energy + Delta-G solvation = -24787.562741 eV Core-core repulsion = 20881.558648 eV Total energy + Delta-G solvation = -3906.004093 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.92842 -40.91224 -40.16634 -38.26078 -37.83656 -37.45705 -35.64594 -34.24220 -32.85121 -31.39845 -30.98161 -29.90801 -27.35535 -26.30891 -24.00635 -23.70245 -23.01641 -21.90591 -20.46429 -19.96618 -19.59469 -18.94204 -18.10819 -17.54788 -16.74074 -16.65642 -16.55840 -16.29325 -16.03223 -15.88872 -15.47451 -15.42862 -15.11538 -14.80600 -14.76184 -14.40744 -14.19968 -14.08828 -13.63052 -13.57655 -13.30794 -13.06191 -12.95483 -12.79843 -12.66791 -12.34170 -12.10453 -11.95828 -11.45766 -11.30298 -10.85329 -10.74884 -10.24376 -9.91153 -9.32350 -8.85404 -8.44627 -6.13902 -0.84848 0.09223 0.47032 0.74160 1.33167 1.36035 1.46832 1.51106 1.54478 1.86035 2.08713 2.20531 2.61791 2.68797 2.86206 2.98302 3.20278 3.37717 3.64482 3.75259 3.98395 4.12701 4.18706 4.34525 4.40613 4.45716 4.69805 4.76893 4.78734 4.87961 5.00089 5.08091 5.10868 5.14257 5.39715 5.46209 5.48739 5.67247 5.77719 6.05517 6.22584 6.32824 6.41253 6.60681 6.99305 7.08755 7.82450 8.79132 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.023374 B = 0.002367 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.613963 B =11826.465889 C =12893.960610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.280 3.720 3 C -0.037 4.037 4 C -0.038 4.038 5 C -0.078 4.078 6 C -0.088 4.088 7 C 0.544 3.456 8 O -0.556 6.556 9 N -0.641 5.641 10 C 0.181 3.819 11 C -0.198 4.198 12 C -0.050 4.050 13 C -0.254 4.254 14 C 0.123 3.877 15 O -0.236 6.236 16 C -0.412 4.412 17 H 0.107 0.893 18 C -0.029 4.029 19 N -0.925 5.925 20 Si 1.022 2.978 21 H -0.265 1.265 22 H -0.273 1.273 23 H -0.248 1.248 24 C -0.212 4.212 25 C -0.101 4.101 26 C 0.156 3.844 27 O -0.503 6.503 28 H 0.184 0.816 29 H 0.182 0.818 30 H 0.433 0.567 31 H 0.170 0.830 32 H 0.160 0.840 33 H 0.122 0.878 34 H 0.272 0.728 35 H 0.103 0.897 36 H 0.134 0.866 37 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.115 0.119 -15.153 23.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.035 4.035 3 C -0.041 4.041 4 C -0.058 4.058 5 C -0.096 4.096 6 C -0.092 4.092 7 C 0.334 3.666 8 O -0.434 6.434 9 N -0.289 5.289 10 C 0.087 3.913 11 C -0.218 4.218 12 C -0.069 4.069 13 C -0.274 4.274 14 C 0.072 3.928 15 O -0.142 6.142 16 C -0.488 4.488 17 H 0.124 0.876 18 C -0.225 4.225 19 N -0.563 5.563 20 Si 0.841 3.159 21 H -0.190 1.190 22 H -0.198 1.198 23 H -0.171 1.171 24 C -0.234 4.234 25 C -0.121 4.121 26 C 0.108 3.892 27 O -0.318 6.318 28 H 0.202 0.798 29 H 0.199 0.801 30 H 0.275 0.725 31 H 0.188 0.812 32 H 0.178 0.822 33 H 0.139 0.861 34 H 0.080 0.920 35 H 0.121 0.879 36 H 0.152 0.848 37 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -19.503 0.768 -14.245 24.163 hybrid contribution 1.137 -0.453 1.082 1.634 sum -18.366 0.315 -13.163 22.598 Atomic orbital electron populations 1.81299 1.13136 1.09664 1.08325 1.25505 0.92387 0.92759 0.92853 1.16648 0.84047 1.06595 0.96798 1.21404 0.93411 0.94222 0.96778 1.21583 0.94008 0.96756 0.97280 1.19759 0.90442 1.02834 0.96158 1.18949 0.88464 0.76484 0.82745 1.90909 1.70255 1.47859 1.34339 1.43056 1.04114 1.64572 1.17184 1.17263 0.82456 0.97866 0.93712 1.20935 0.94631 1.08688 0.97550 1.21057 0.93604 0.95083 0.97131 1.21353 1.00978 1.11384 0.93675 1.19711 0.91706 0.93631 0.87748 1.83959 1.21142 1.76095 1.33038 1.21897 0.79744 1.48745 0.98390 0.87585 1.26695 1.06199 0.96143 0.93494 1.70218 1.38602 1.46424 1.01048 0.84537 0.73161 0.78715 0.79457 1.18981 1.19764 1.17090 1.20222 0.90785 1.12124 1.00247 1.21422 0.92990 0.98464 0.99188 1.18119 0.88743 0.95456 0.86895 1.84758 1.75727 1.39059 1.32224 0.79845 0.80115 0.72465 0.81236 0.82245 0.86069 0.91951 0.87937 0.84783 0.72061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.35 18.54 19.00 0.35 -9.00 16 2 C 0.28 4.35 14.85 88.33 1.31 5.66 16 3 C -0.04 -0.42 5.75 -21.20 -0.12 -0.54 16 4 C -0.04 -0.21 9.73 22.48 0.22 0.01 16 5 C -0.08 -0.53 9.51 22.49 0.21 -0.32 16 6 C -0.09 -1.49 5.87 -20.07 -0.12 -1.61 16 7 C 0.54 14.56 7.61 86.80 0.66 15.22 16 8 O -0.56 -22.14 13.76 -3.89 -0.05 -22.19 16 9 N -0.64 -14.23 5.28 -306.10 -1.62 -15.85 16 10 C 0.18 5.86 6.29 38.16 0.24 6.10 16 11 C -0.20 -5.15 9.96 22.43 0.22 -4.93 16 12 C -0.05 -1.52 10.03 22.23 0.22 -1.30 16 13 C -0.25 -10.72 9.17 22.42 0.21 -10.52 16 14 C 0.12 6.32 6.64 22.56 0.15 6.47 16 15 O -0.24 -14.80 9.76 -22.87 -0.22 -15.02 16 16 C -0.41 -24.46 9.49 67.92 0.64 -23.81 16 17 H 0.11 5.66 5.20 -2.91 -0.02 5.65 16 18 C -0.03 -1.66 5.49 84.83 0.47 -1.19 16 19 N -0.92 -58.69 13.67 21.61 0.30 -58.40 16 20 Si 1.02 43.45 29.55 68.60 2.03 45.48 16 21 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 22 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 23 H -0.25 -9.55 7.11 99.48 0.71 -8.85 16 24 C -0.21 -9.72 8.64 22.51 0.19 -9.53 16 25 C -0.10 -1.87 9.52 22.61 0.22 -1.66 16 26 C 0.16 2.29 6.70 22.79 0.15 2.45 16 27 O -0.50 -7.40 12.92 -90.57 -1.17 -8.57 16 28 H 0.18 -0.26 8.06 -2.91 -0.02 -0.29 16 29 H 0.18 -0.20 6.39 -2.91 -0.02 -0.22 16 30 H 0.43 4.43 6.85 -92.71 -0.63 3.80 16 31 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 32 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 33 H 0.12 5.17 5.63 -2.91 -0.02 5.15 16 34 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 35 H 0.10 5.29 6.22 -2.91 -0.02 5.27 16 36 H 0.13 3.07 7.63 -2.91 -0.02 3.05 16 37 H 0.42 2.40 9.06 -74.06 -0.67 1.73 16 Total: -1.00 -91.73 339.53 4.38 -87.35 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -0.12 Total: 15.68 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: 4.88 Total: -19.48 kcal Atomic # 7 Polarization: -82.28 SS G_CDS: -0.97 Total: -83.25 kcal Atomic # 8 Polarization: -44.33 SS G_CDS: -1.45 Total: -45.78 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -91.73 4.38 -87.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785408206.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.983 kcal (2) G-P(sol) polarization free energy of solvation -91.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds