Wall clock time and date at job start Tue Mar 31 2020 13:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00183 * 2 1 4 4 H 1.48501 * 109.47145 * 270.00144 * 3 2 1 5 5 H 1.48494 * 109.47051 * 30.00164 * 3 2 1 6 6 H 1.48501 * 109.46918 * 150.00601 * 3 2 1 7 7 C 1.37885 * 119.99648 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99466 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99795 * 359.97438 * 7 2 1 10 10 N 1.46507 * 109.46658 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99790 * 180.02562 * 10 9 7 12 12 O 1.21588 * 119.99989 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99879 * 180.02562 * 11 10 9 14 14 C 1.39946 * 119.99692 * 185.31635 * 13 11 10 15 15 C 1.38885 * 120.07290 * 33.26501 * 14 13 11 16 16 C 1.38093 * 119.93055 * 179.97438 * 15 14 13 17 17 C 1.38303 * 120.06835 * 0.02562 * 16 15 14 18 18 C 1.38258 * 120.14249 * 0.02562 * 17 16 15 19 19 C 1.50695 * 119.96634 * 179.97438 * 18 17 16 20 20 S 1.83777 * 111.15355 * 300.00450 * 19 18 17 21 21 C 1.82079 * 99.50311 * 157.22687 * 20 19 18 22 22 C 1.52478 * 111.03595 * 334.34709 * 21 20 19 23 23 S 1.82075 * 111.04088 * 0.02562 * 22 21 20 24 24 C 1.38139 * 120.06831 * 0.23634 * 18 17 16 25 25 H 0.97001 * 119.99641 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47173 * 60.00330 * 9 7 2 27 27 H 1.09001 * 109.47259 * 299.99909 * 9 7 2 28 28 H 0.96996 * 120.00172 * 0.02562 * 10 9 7 29 29 H 0.97000 * 120.00149 * 5.31209 * 13 11 10 30 30 H 1.07997 * 120.03315 * 359.97438 * 15 14 13 31 31 H 1.07996 * 119.96558 * 180.02562 * 16 15 14 32 32 H 1.08004 * 119.93135 * 179.97438 * 17 16 15 33 33 H 1.09002 * 111.04331 * 175.71543 * 19 18 17 34 34 H 1.08995 * 109.17378 * 94.76688 * 21 20 19 35 35 H 1.09005 * 109.17038 * 214.02723 * 21 20 19 36 36 H 1.08997 * 109.17484 * 120.42304 * 22 21 20 37 37 H 1.09002 * 109.17073 * 239.58246 * 22 21 20 38 38 H 1.08002 * 120.03056 * 179.71901 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 1.7536 -4.8834 -0.0025 12 8 0.5582 -5.1055 -0.0017 13 7 2.6294 -5.9079 -0.0031 14 6 2.1668 -7.2238 -0.1162 15 6 1.0373 -7.5016 -0.8752 16 6 0.5837 -8.8013 -0.9852 17 6 1.2525 -9.8256 -0.3401 18 6 2.3766 -9.5522 0.4171 19 6 3.1020 -10.6713 1.1188 20 16 2.0002 -11.5295 2.3133 21 6 2.8610 -13.1304 2.4196 22 6 3.6611 -13.4069 1.1514 23 16 3.4869 -12.0427 -0.0419 24 6 2.8323 -8.2535 0.5355 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8897 28 1 3.1566 -3.4356 -0.0021 29 1 3.5804 -5.7331 0.0747 30 1 0.5144 -6.7021 -1.3788 31 1 -0.2943 -9.0180 -1.5755 32 1 0.8956 -10.8412 -0.4273 33 1 4.0046 -10.3061 1.6086 34 1 3.5376 -13.1171 3.2740 35 1 2.1261 -13.9235 2.5576 36 1 4.7134 -13.5234 1.4102 37 1 3.3020 -14.3297 0.6956 38 1 3.7077 -8.0400 1.1308 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785668403.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:14 Heat of formation + Delta-G solvation = 2.197203 kcal Electronic energy + Delta-G solvation = -21366.594468 eV Core-core repulsion = 18040.416137 eV Total energy + Delta-G solvation = -3326.178330 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.29249 -38.58924 -34.89447 -34.14553 -33.85777 -32.64942 -32.22633 -29.74588 -27.33938 -26.92452 -24.28057 -23.28258 -22.43710 -21.71596 -20.13393 -18.26691 -17.98790 -16.73752 -16.64302 -16.27543 -16.02348 -15.75118 -15.48422 -14.89516 -14.65826 -14.33799 -14.25569 -13.82984 -13.63066 -13.45279 -13.21851 -12.87289 -12.64963 -12.21674 -12.02589 -11.87165 -11.66825 -11.49642 -11.26940 -10.99612 -10.93039 -10.34049 -10.21107 -10.08532 -9.52322 -9.42765 -8.81581 -8.78089 -8.42320 -8.17404 -7.94389 -7.71795 -6.19426 -4.26548 0.49238 1.05175 1.33896 1.39237 1.69948 2.24852 3.09791 3.22698 3.29365 3.31824 3.60718 3.98758 4.02947 4.09210 4.15308 4.29509 4.49559 4.83731 4.91254 4.93079 4.99180 5.00215 5.16869 5.23501 5.37015 5.55473 5.68051 5.87087 6.34684 6.38130 6.55220 6.64634 6.99373 7.14101 7.36082 7.46474 7.49076 7.78682 7.95651 8.64865 8.80086 9.14906 9.40446 10.90681 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.035290 B = 0.002098 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.229866 B =13342.010355 C =13483.792970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.266 3.734 10 N -0.721 5.721 11 C 0.690 3.310 12 O -0.581 6.581 13 N -0.696 5.696 14 C 0.182 3.818 15 C -0.103 4.103 16 C -0.101 4.101 17 C -0.103 4.103 18 C -0.062 4.062 19 C 0.053 3.947 20 S -0.230 6.230 21 C -0.093 4.093 22 C -0.092 4.092 23 S -0.233 6.233 24 C -0.129 4.129 25 H 0.266 0.734 26 H 0.028 0.972 27 H 0.027 0.973 28 H 0.389 0.611 29 H 0.403 0.597 30 H 0.143 0.857 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.121 0.879 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.114 0.886 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.555 -26.943 2.017 28.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.373 5.373 11 C 0.390 3.610 12 O -0.458 6.458 13 N -0.344 5.344 14 C 0.085 3.915 15 C -0.125 4.125 16 C -0.120 4.120 17 C -0.125 4.125 18 C -0.065 4.065 19 C -0.185 4.185 20 S -0.002 6.002 21 C -0.244 4.244 22 C -0.242 4.242 23 S -0.005 6.005 24 C -0.153 4.153 25 H 0.076 0.924 26 H 0.046 0.954 27 H 0.045 0.955 28 H 0.221 0.779 29 H 0.238 0.762 30 H 0.160 0.840 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.139 0.861 34 H 0.115 0.885 35 H 0.133 0.867 36 H 0.115 0.885 37 H 0.133 0.867 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.443 -26.595 1.448 27.655 hybrid contribution 2.398 0.664 0.908 2.649 sum 9.841 -25.931 2.356 27.835 Atomic orbital electron populations 1.69977 1.06089 1.27381 1.48678 1.24951 0.94939 0.99453 0.94678 0.86391 0.79576 0.82560 0.78228 1.20440 1.20980 1.19772 1.21199 0.93287 0.90322 1.53460 0.91876 1.19063 0.87706 0.80866 0.97870 1.45792 1.11162 1.04143 1.76173 1.16158 0.85135 0.81039 0.78635 1.90903 1.13826 1.83725 1.57381 1.42832 1.09996 1.03653 1.77887 1.17372 0.95660 0.83076 0.95359 1.21437 0.96250 0.97440 0.97342 1.21037 0.99677 0.91889 0.99415 1.21000 0.94503 1.00015 0.97002 1.18293 0.97012 0.90893 1.00256 1.24643 1.00972 0.97360 0.95516 1.88086 1.39735 1.11819 1.60519 1.23790 1.02463 0.98143 0.99958 1.23779 1.04016 1.00682 0.95717 1.87908 1.93284 1.03006 1.16264 1.20569 1.02443 0.91259 1.01061 0.92381 0.95449 0.95477 0.77881 0.76176 0.83978 0.85295 0.85008 0.86114 0.88504 0.86733 0.88527 0.86745 0.85634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.80 13.29 55.43 0.74 -25.06 16 2 C 0.06 1.75 5.46 -17.81 -0.10 1.65 16 3 Si 0.91 20.63 29.54 -169.99 -5.02 15.61 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.54 -14.54 9.28 -34.44 -0.32 -14.86 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.27 6.94 5.43 -5.19 -0.03 6.91 16 10 N -0.72 -14.88 5.55 -66.41 -0.37 -15.25 16 11 C 0.69 13.82 8.30 -86.92 -0.72 13.10 16 12 O -0.58 -13.92 14.03 5.29 0.07 -13.85 16 13 N -0.70 -10.44 5.35 -14.22 -0.08 -10.52 16 14 C 0.18 2.68 6.28 -83.69 -0.53 2.15 16 15 C -0.10 -1.59 8.66 -39.40 -0.34 -1.93 16 16 C -0.10 -1.32 10.04 -39.61 -0.40 -1.71 16 17 C -0.10 -1.25 8.88 -39.55 -0.35 -1.60 16 18 C -0.06 -0.72 5.04 -104.65 -0.53 -1.25 16 19 C 0.05 0.51 3.83 36.00 0.14 0.65 16 20 S -0.23 -2.25 22.01 -101.43 -2.23 -4.49 16 21 C -0.09 -0.54 6.87 36.89 0.25 -0.29 16 22 C -0.09 -0.51 6.86 36.89 0.25 -0.26 16 23 S -0.23 -2.11 21.61 -101.43 -2.19 -4.30 16 24 C -0.13 -1.57 9.60 -39.39 -0.38 -1.95 16 25 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.39 6.74 8.34 -40.82 -0.34 6.40 16 29 H 0.40 4.57 8.84 -40.82 -0.36 4.21 16 30 H 0.14 2.52 6.41 -52.49 -0.34 2.18 16 31 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.13 1.46 7.82 -52.48 -0.41 1.05 16 33 H 0.12 1.02 7.97 -51.93 -0.41 0.61 16 34 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.11 0.52 8.14 -51.92 -0.42 0.10 16 36 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.13 1.23 7.99 -52.49 -0.42 0.82 16 LS Contribution 347.41 15.07 5.24 5.24 Total: -1.00 -32.65 347.41 -11.66 -44.31 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -4.77 Total: 7.70 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -3.04 Total: 0.61 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: 0.29 Total: -50.83 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.07 Total: -13.85 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: -4.37 SS G_CDS: -4.42 Total: -8.79 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.65 -11.66 -44.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785668403.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.507 kcal (2) G-P(sol) polarization free energy of solvation -32.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds