Wall clock time and date at job start Tue Mar 31 2020 13:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00183 * 2 1 4 4 H 1.48501 * 109.47145 * 270.00144 * 3 2 1 5 5 H 1.48494 * 109.47051 * 30.00164 * 3 2 1 6 6 H 1.48501 * 109.46918 * 150.00601 * 3 2 1 7 7 C 1.37885 * 119.99648 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99466 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99795 * 359.97438 * 7 2 1 10 10 N 1.46507 * 109.46658 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99790 * 180.02562 * 10 9 7 12 12 O 1.21588 * 119.99989 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99879 * 180.02562 * 11 10 9 14 14 C 1.39946 * 119.99692 * 185.31635 * 13 11 10 15 15 C 1.38885 * 120.07290 * 33.26501 * 14 13 11 16 16 C 1.38093 * 119.93055 * 179.97438 * 15 14 13 17 17 C 1.38303 * 120.06835 * 0.02562 * 16 15 14 18 18 C 1.38258 * 120.14249 * 0.02562 * 17 16 15 19 19 C 1.50695 * 119.96634 * 179.97438 * 18 17 16 20 20 S 1.83777 * 111.15355 * 300.00450 * 19 18 17 21 21 C 1.82079 * 99.50311 * 157.22687 * 20 19 18 22 22 C 1.52478 * 111.03595 * 334.34709 * 21 20 19 23 23 S 1.82075 * 111.04088 * 0.02562 * 22 21 20 24 24 C 1.38139 * 120.06831 * 0.23634 * 18 17 16 25 25 H 0.97001 * 119.99641 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47173 * 60.00330 * 9 7 2 27 27 H 1.09001 * 109.47259 * 299.99909 * 9 7 2 28 28 H 0.96996 * 120.00172 * 0.02562 * 10 9 7 29 29 H 0.97000 * 120.00149 * 5.31209 * 13 11 10 30 30 H 1.07997 * 120.03315 * 359.97438 * 15 14 13 31 31 H 1.07996 * 119.96558 * 180.02562 * 16 15 14 32 32 H 1.08004 * 119.93135 * 179.97438 * 17 16 15 33 33 H 1.09002 * 111.04331 * 175.71543 * 19 18 17 34 34 H 1.08995 * 109.17378 * 94.76688 * 21 20 19 35 35 H 1.09005 * 109.17038 * 214.02723 * 21 20 19 36 36 H 1.08997 * 109.17484 * 120.42304 * 22 21 20 37 37 H 1.09002 * 109.17073 * 239.58246 * 22 21 20 38 38 H 1.08002 * 120.03056 * 179.71901 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 1.7536 -4.8834 -0.0025 12 8 0.5582 -5.1055 -0.0017 13 7 2.6294 -5.9079 -0.0031 14 6 2.1668 -7.2238 -0.1162 15 6 1.0373 -7.5016 -0.8752 16 6 0.5837 -8.8013 -0.9852 17 6 1.2525 -9.8256 -0.3401 18 6 2.3766 -9.5522 0.4171 19 6 3.1020 -10.6713 1.1188 20 16 2.0002 -11.5295 2.3133 21 6 2.8610 -13.1304 2.4196 22 6 3.6611 -13.4069 1.1514 23 16 3.4869 -12.0427 -0.0419 24 6 2.8323 -8.2535 0.5355 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8897 28 1 3.1566 -3.4356 -0.0021 29 1 3.5804 -5.7331 0.0747 30 1 0.5144 -6.7021 -1.3788 31 1 -0.2943 -9.0180 -1.5755 32 1 0.8956 -10.8412 -0.4273 33 1 4.0046 -10.3061 1.6086 34 1 3.5376 -13.1171 3.2740 35 1 2.1261 -13.9235 2.5576 36 1 4.7134 -13.5234 1.4102 37 1 3.3020 -14.3297 0.6956 38 1 3.7077 -8.0400 1.1308 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785668403.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:13 Heat of formation + Delta-G solvation = -18.336888 kcal Electronic energy + Delta-G solvation = -21367.484893 eV Core-core repulsion = 18040.416137 eV Total energy + Delta-G solvation = -3327.068755 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.66311 -39.89121 -36.44008 -35.85512 -34.46975 -34.29977 -33.40777 -31.00725 -29.01266 -28.08774 -25.08091 -24.71502 -23.50092 -23.18954 -21.63244 -19.87833 -19.03596 -18.06881 -17.57519 -17.36673 -17.30526 -16.89019 -16.64064 -16.22187 -16.00421 -15.80931 -15.04898 -14.95164 -14.84234 -14.45256 -14.40298 -14.11267 -14.05449 -13.61961 -13.35901 -12.90788 -12.75748 -12.74253 -12.66278 -12.36716 -12.21934 -12.03746 -11.48613 -11.45396 -11.15369 -10.81131 -10.79657 -9.95044 -9.81653 -9.11934 -9.08351 -8.60994 -8.28998 -6.45425 -0.32344 0.31579 0.41639 0.71897 0.82027 1.43638 1.46488 1.56951 1.65962 1.70324 2.09857 2.38770 2.86028 3.06282 3.24639 3.40037 3.57182 3.71332 3.77330 4.03806 4.22609 4.31048 4.46871 4.55495 4.56726 4.57957 4.61882 4.86786 5.03967 5.24639 5.26420 5.33989 5.42985 5.48110 5.53372 5.62896 5.82247 5.99148 6.15927 6.65420 7.14845 7.24807 7.57314 8.83162 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.035290 B = 0.002098 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.229866 B =13342.010355 C =13483.792970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.986 3.014 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.255 1.255 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.285 3.715 10 N -0.715 5.715 11 C 0.691 3.309 12 O -0.625 6.625 13 N -0.673 5.673 14 C 0.158 3.842 15 C -0.130 4.130 16 C -0.103 4.103 17 C -0.100 4.100 18 C -0.060 4.060 19 C 0.061 3.939 20 S -0.286 6.286 21 C -0.077 4.077 22 C -0.080 4.080 23 S -0.268 6.268 24 C -0.119 4.119 25 H 0.269 0.731 26 H -0.011 1.011 27 H -0.012 1.012 28 H 0.408 0.592 29 H 0.423 0.577 30 H 0.110 0.890 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.136 0.864 34 H 0.115 0.885 35 H 0.131 0.869 36 H 0.117 0.883 37 H 0.132 0.868 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.618 -28.799 2.914 31.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.179 1.179 7 C -0.593 4.593 8 H 0.103 0.897 9 C 0.162 3.838 10 N -0.368 5.368 11 C 0.392 3.608 12 O -0.506 6.506 13 N -0.322 5.322 14 C 0.062 3.938 15 C -0.152 4.152 16 C -0.122 4.122 17 C -0.121 4.121 18 C -0.063 4.063 19 C -0.177 4.177 20 S -0.058 6.058 21 C -0.227 4.227 22 C -0.230 4.230 23 S -0.040 6.040 24 C -0.143 4.143 25 H 0.078 0.922 26 H 0.007 0.993 27 H 0.006 0.994 28 H 0.243 0.757 29 H 0.262 0.738 30 H 0.128 0.872 31 H 0.162 0.838 32 H 0.161 0.839 33 H 0.153 0.847 34 H 0.134 0.866 35 H 0.149 0.851 36 H 0.135 0.865 37 H 0.150 0.850 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 10.586 -28.507 2.339 30.499 hybrid contribution 1.431 0.967 0.650 1.845 sum 12.017 -27.539 2.989 30.195 Atomic orbital electron populations 1.70142 1.08243 1.28592 1.49843 1.26067 0.95797 1.03877 0.93895 0.85136 0.78464 0.76914 0.78566 1.19634 1.21033 1.17892 1.21590 0.94377 0.90351 1.52991 0.89679 1.18473 0.88026 0.83048 0.94274 1.45329 1.11290 1.03446 1.76731 1.16246 0.85039 0.81519 0.78020 1.90878 1.16195 1.84436 1.59072 1.42414 1.10269 1.02787 1.76780 1.17556 0.96379 0.83094 0.96723 1.21324 0.97274 0.97714 0.98862 1.21193 1.00233 0.91124 0.99606 1.21163 0.94434 1.00119 0.96369 1.18575 0.96677 0.91551 0.99455 1.24568 1.00931 0.96888 0.95285 1.88278 1.41542 1.15217 1.60730 1.23875 1.02791 0.95349 1.00699 1.23890 1.05365 0.99232 0.94473 1.88032 1.93282 1.04541 1.18131 1.20783 1.02682 0.90600 1.00207 0.92228 0.99275 0.99375 0.75661 0.73793 0.87182 0.83796 0.83887 0.84653 0.86610 0.85131 0.86476 0.84986 0.82794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.95 13.29 21.45 0.28 -55.66 16 2 C 0.00 0.19 5.46 84.66 0.46 0.65 16 3 Si 0.99 42.05 29.54 68.60 2.03 44.08 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 7 C -0.56 -29.93 9.28 25.60 0.24 -29.69 16 8 H 0.09 4.11 7.60 -2.91 -0.02 4.09 16 9 C 0.28 15.61 5.43 85.63 0.46 16.08 16 10 N -0.71 -30.25 5.55 -482.28 -2.68 -32.93 16 11 C 0.69 28.73 8.30 179.05 1.49 30.21 16 12 O -0.63 -31.91 14.03 -3.99 -0.06 -31.97 16 13 N -0.67 -20.22 5.35 -317.17 -1.70 -21.92 16 14 C 0.16 4.68 6.28 38.15 0.24 4.92 16 15 C -0.13 -4.24 8.66 22.39 0.19 -4.04 16 16 C -0.10 -2.73 10.04 22.25 0.22 -2.51 16 17 C -0.10 -2.34 8.88 22.29 0.20 -2.14 16 18 C -0.06 -1.32 5.04 -19.88 -0.10 -1.42 16 19 C 0.06 1.05 3.83 71.23 0.27 1.32 16 20 S -0.29 -5.03 22.01 -44.07 -0.97 -6.00 16 21 C -0.08 -0.62 6.87 71.81 0.49 -0.13 16 22 C -0.08 -0.58 6.86 71.81 0.49 -0.09 16 23 S -0.27 -4.20 21.61 -44.07 -0.95 -5.15 16 24 C -0.12 -2.73 9.60 22.39 0.22 -2.52 16 25 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 26 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 27 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 28 H 0.41 13.92 8.34 -92.71 -0.77 13.15 16 29 H 0.42 9.03 8.84 -92.71 -0.82 8.21 16 30 H 0.11 4.28 6.41 -2.91 -0.02 4.26 16 31 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 32 H 0.14 3.02 7.82 -2.91 -0.02 2.99 16 33 H 0.14 1.91 7.97 -2.39 -0.02 1.89 16 34 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.15 2.59 7.99 -2.91 -0.02 2.57 16 Total: -1.00 -74.99 347.41 0.35 -74.64 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: -0.49 Total: 24.27 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 4.88 Total: 10.64 kcal Atomic # 7 Polarization: -106.42 SS G_CDS: -4.09 Total: -110.51 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -0.06 Total: -31.97 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Atomic # 16 Polarization: -9.23 SS G_CDS: -1.92 Total: -11.15 kcal Total: -74.99 0.35 -74.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785668403.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.301 kcal (2) G-P(sol) polarization free energy of solvation -74.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds