Wall clock time and date at job start Tue Mar 31 2020 14:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99915 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99998 * 3 2 1 5 5 H 1.48503 * 109.47139 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47012 * 119.99997 * 3 2 1 7 7 C 1.37878 * 120.00230 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00114 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00032 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47292 * 179.97438 * 9 7 2 11 11 C 1.34772 * 119.99904 * 179.97438 * 10 9 7 12 12 O 1.21584 * 120.00269 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99666 * 180.02562 * 11 10 9 14 14 N 1.40098 * 120.00246 * 359.97438 * 13 11 10 15 15 C 1.34772 * 120.00032 * 180.02562 * 14 13 11 16 16 O 1.21590 * 120.00277 * 359.97438 * 15 14 13 17 17 C 1.47535 * 119.99805 * 180.02562 * 15 14 13 18 18 C 1.39708 * 120.19331 * 0.02562 * 17 15 14 19 19 C 1.37788 * 119.90595 * 179.97438 * 18 17 15 20 20 N 1.48027 * 119.84682 * 180.02562 * 19 18 17 21 21 O 1.21802 * 119.99972 * 0.02562 * 20 19 18 22 22 O 1.21799 * 119.99584 * 180.02562 * 20 19 18 23 23 C 1.38544 * 120.30597 * 0.02562 * 19 18 17 24 24 C 1.38063 * 120.38588 * 359.71773 * 23 19 18 25 25 C 1.38704 * 120.08299 * 0.56053 * 24 23 19 26 26 O 1.35655 * 120.15039 * 179.71937 * 25 24 23 27 27 H 0.97003 * 120.00271 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47550 * 59.99840 * 9 7 2 29 29 H 1.09000 * 109.47129 * 300.00030 * 9 7 2 30 30 H 0.96999 * 119.99850 * 359.97438 * 10 9 7 31 31 H 0.97006 * 119.99997 * 180.02562 * 13 11 10 32 32 H 0.96996 * 119.99758 * 0.02562 * 14 13 11 33 33 H 1.07995 * 120.04328 * 359.96278 * 18 17 15 34 34 H 1.07993 * 119.81132 * 179.97438 * 23 19 18 35 35 H 1.08002 * 119.95400 * 180.30033 * 24 23 19 36 36 H 0.96696 * 114.00102 * 269.72337 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 7 2.2032 -3.6126 -0.0027 11 6 1.7539 -4.8833 -0.0033 12 8 0.5586 -5.1055 -0.0035 13 7 2.6298 -5.9077 -0.0037 14 7 4.0072 -5.6516 -0.0040 15 6 4.8830 -6.6760 -0.0049 16 8 4.4778 -7.8224 -0.0050 17 6 6.3335 -6.4063 -0.0047 18 6 6.8036 -5.0907 -0.0030 19 6 8.1595 -4.8456 -0.0022 20 7 8.6561 -3.4512 0.0002 21 8 7.8667 -2.5236 0.0019 22 8 9.8541 -3.2314 0.0004 23 6 9.0602 -5.8984 -0.0037 24 6 8.6093 -7.2033 -0.0001 25 6 7.2478 -7.4684 -0.0067 26 8 6.8033 -8.7501 -0.0088 27 1 -0.4851 0.8400 0.0004 28 1 0.6248 -2.5563 -0.8920 29 1 0.6241 -2.5575 0.8880 30 1 3.1568 -3.4353 -0.0029 31 1 2.3065 -6.8223 -0.0045 32 1 4.3305 -4.7371 -0.0036 33 1 6.1052 -4.2670 -0.0024 34 1 10.1212 -5.6971 -0.0035 35 1 9.3176 -8.0186 0.0037 36 1 6.6746 -9.1202 -0.8928 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787365790.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:24 Heat of formation + Delta-G solvation = -34.452520 kcal Electronic energy + Delta-G solvation = -26554.370554 eV Core-core repulsion = 22237.556887 eV Total energy + Delta-G solvation = -4316.813667 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.099 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.53942 -41.22740 -39.90862 -38.72411 -37.61582 -36.86027 -35.65744 -34.39520 -32.95199 -32.32471 -31.65574 -30.34381 -27.21176 -26.61635 -25.03661 -23.22177 -22.98352 -21.71933 -20.68150 -19.93550 -19.36533 -19.03676 -18.73466 -17.86375 -17.83310 -16.68852 -16.53056 -16.41019 -15.83007 -15.68519 -15.30209 -14.96603 -14.71292 -14.60918 -14.21645 -13.97051 -13.32389 -13.25817 -13.20470 -12.26116 -12.04743 -11.93119 -11.68438 -11.50294 -11.39706 -11.33613 -11.04030 -10.87928 -10.63311 -10.35489 -10.21446 -9.97404 -9.84010 -9.47095 -8.85012 -8.48848 -7.97329 -6.20624 -4.28743 -0.72954 -0.17278 0.75844 0.95248 1.66619 2.01645 2.74328 3.18689 3.26655 3.31110 3.31889 3.39447 3.57527 3.62806 3.64977 4.02509 4.08452 4.31662 4.36532 4.68193 4.77393 4.95114 5.05439 5.16165 5.18543 5.38627 5.98444 6.25602 6.51139 6.84933 7.15316 7.25591 7.26790 7.28957 7.43173 7.51114 7.81405 7.94532 8.55002 8.73963 8.95741 9.38327 10.89259 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.010350 B = 0.003856 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.662152 B = 7259.918760 C = 9946.834080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.067 3.933 3 Si 0.904 3.096 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.548 4.548 8 H 0.064 0.936 9 C 0.264 3.736 10 N -0.723 5.723 11 C 0.701 3.299 12 O -0.572 6.572 13 N -0.539 5.539 14 N -0.515 5.515 15 C 0.561 3.439 16 O -0.513 6.513 17 C -0.155 4.155 18 C -0.007 4.007 19 C -0.060 4.060 20 N 0.026 4.974 21 O -0.143 6.143 22 O -0.157 6.157 23 C -0.014 4.014 24 C -0.151 4.151 25 C 0.228 3.772 26 O -0.467 6.467 27 H 0.268 0.732 28 H 0.029 0.971 29 H 0.030 0.970 30 H 0.380 0.620 31 H 0.437 0.563 32 H 0.421 0.579 33 H 0.162 0.838 34 H 0.165 0.835 35 H 0.163 0.837 36 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.195 -15.254 -1.769 26.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.138 4.138 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.586 4.586 8 H 0.082 0.918 9 C 0.144 3.856 10 N -0.377 5.377 11 C 0.400 3.600 12 O -0.446 6.446 13 N -0.299 5.299 14 N -0.266 5.266 15 C 0.346 3.654 16 O -0.388 6.388 17 C -0.161 4.161 18 C -0.027 4.027 19 C -0.143 4.143 20 N 0.548 4.452 21 O -0.361 6.361 22 O -0.372 6.372 23 C -0.033 4.033 24 C -0.170 4.170 25 C 0.181 3.819 26 O -0.281 6.281 27 H 0.077 0.923 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.213 0.787 31 H 0.282 0.718 32 H 0.264 0.736 33 H 0.179 0.821 34 H 0.182 0.818 35 H 0.181 0.819 36 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 19.532 -16.507 -1.182 25.600 hybrid contribution 1.054 1.462 -0.439 1.856 sum 20.587 -15.044 -1.620 25.549 Atomic orbital electron populations 1.69959 1.06153 1.27607 1.48417 1.24924 0.94906 0.99477 0.94452 0.86457 0.79398 0.82069 0.78948 1.19884 1.21092 1.19882 1.21141 0.93297 0.90208 1.53964 0.91774 1.19128 0.87627 0.80784 0.98094 1.45855 1.10696 1.04536 1.76634 1.16015 0.84224 0.80881 0.78848 1.91002 1.12048 1.82427 1.59107 1.44891 0.91279 1.10480 1.83251 1.44679 0.96771 1.09891 1.75269 1.17575 0.84352 0.84828 0.78626 1.90874 1.78658 1.19828 1.49395 1.20097 0.93682 0.92548 1.09780 1.21146 0.93995 0.97289 0.90275 1.20950 0.94392 0.82433 1.16488 1.43497 1.00987 1.02837 0.97918 1.94651 1.53118 1.35712 1.52640 1.94548 0.98724 1.90561 1.53372 1.21136 1.01424 0.90245 0.90494 1.21501 0.95023 0.96858 1.03667 1.18727 0.90119 0.84607 0.88497 1.84720 1.87288 1.21865 1.34203 0.92276 0.95253 0.95243 0.78700 0.71787 0.73613 0.82060 0.81797 0.81914 0.72785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.44 13.29 55.43 0.74 -24.71 16 2 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 7 C -0.55 -14.27 9.28 -34.44 -0.32 -14.59 16 8 H 0.06 1.54 7.60 -52.48 -0.40 1.14 16 9 C 0.26 6.71 5.43 -5.20 -0.03 6.68 16 10 N -0.72 -14.36 5.51 -66.42 -0.37 -14.72 16 11 C 0.70 13.69 8.68 -86.92 -0.75 12.93 16 12 O -0.57 -13.59 17.18 5.29 0.09 -13.50 16 13 N -0.54 -8.10 6.26 27.63 0.17 -7.92 16 14 N -0.52 -6.04 6.21 30.46 0.19 -5.85 16 15 C 0.56 6.18 7.88 -12.47 -0.10 6.08 16 16 O -0.51 -6.88 15.00 -16.59 -0.25 -7.13 16 17 C -0.16 -1.27 5.89 -104.84 -0.62 -1.88 16 18 C -0.01 -0.06 9.04 -39.20 -0.35 -0.41 16 19 C -0.06 -0.48 6.84 -79.99 -0.55 -1.03 16 20 N 0.03 0.29 4.45 33.94 0.15 0.44 16 21 O -0.14 -1.86 18.43 -29.46 -0.54 -2.40 16 22 O -0.16 -1.79 18.43 -29.46 -0.54 -2.33 16 23 C -0.01 -0.07 9.54 -39.53 -0.38 -0.45 16 24 C -0.15 -0.63 9.98 -39.47 -0.39 -1.03 16 25 C 0.23 1.48 6.72 -38.69 -0.26 1.22 16 26 O -0.47 -3.12 11.58 -40.54 -0.47 -3.58 16 27 H 0.27 7.25 8.31 -40.82 -0.34 6.92 16 28 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.38 6.23 6.24 -40.82 -0.25 5.97 16 31 H 0.44 6.36 8.10 -182.59 -1.48 4.88 16 32 H 0.42 4.23 4.73 -182.60 -0.86 3.36 16 33 H 0.16 1.16 5.94 -52.49 -0.31 0.84 16 34 H 0.16 0.57 7.59 -52.49 -0.40 0.17 16 35 H 0.16 0.23 8.06 -52.49 -0.42 -0.19 16 36 H 0.41 1.05 9.06 45.56 0.41 1.46 16 LS Contribution 333.84 15.07 5.03 5.03 Total: -1.00 -35.67 333.84 -8.36 -44.04 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -3.70 Total: 7.95 kcal Atomic # 6 Polarization: 13.08 SS G_CDS: -3.85 Total: 9.23 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: 0.88 Total: -52.76 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -1.71 Total: -28.95 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.67 -8.36 -44.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787365790.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.584 kcal (2) G-P(sol) polarization free energy of solvation -35.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds