Wall clock time and date at job start Tue Mar 31 2020 14:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99915 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99998 * 3 2 1 5 5 H 1.48503 * 109.47139 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47012 * 119.99997 * 3 2 1 7 7 C 1.37878 * 120.00230 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00114 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00032 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47292 * 179.97438 * 9 7 2 11 11 C 1.34772 * 119.99904 * 179.97438 * 10 9 7 12 12 O 1.21584 * 120.00269 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99666 * 180.02562 * 11 10 9 14 14 N 1.40098 * 120.00246 * 359.97438 * 13 11 10 15 15 C 1.34772 * 120.00032 * 180.02562 * 14 13 11 16 16 O 1.21590 * 120.00277 * 359.97438 * 15 14 13 17 17 C 1.47535 * 119.99805 * 180.02562 * 15 14 13 18 18 C 1.39708 * 120.19331 * 0.02562 * 17 15 14 19 19 C 1.37788 * 119.90595 * 179.97438 * 18 17 15 20 20 N 1.48027 * 119.84682 * 180.02562 * 19 18 17 21 21 O 1.21802 * 119.99972 * 0.02562 * 20 19 18 22 22 O 1.21799 * 119.99584 * 180.02562 * 20 19 18 23 23 C 1.38544 * 120.30597 * 0.02562 * 19 18 17 24 24 C 1.38063 * 120.38588 * 359.71773 * 23 19 18 25 25 C 1.38704 * 120.08299 * 0.56053 * 24 23 19 26 26 O 1.35655 * 120.15039 * 179.71937 * 25 24 23 27 27 H 0.97003 * 120.00271 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47550 * 59.99840 * 9 7 2 29 29 H 1.09000 * 109.47129 * 300.00030 * 9 7 2 30 30 H 0.96999 * 119.99850 * 359.97438 * 10 9 7 31 31 H 0.97006 * 119.99997 * 180.02562 * 13 11 10 32 32 H 0.96996 * 119.99758 * 0.02562 * 14 13 11 33 33 H 1.07995 * 120.04328 * 359.96278 * 18 17 15 34 34 H 1.07993 * 119.81132 * 179.97438 * 23 19 18 35 35 H 1.08002 * 119.95400 * 180.30033 * 24 23 19 36 36 H 0.96696 * 114.00102 * 269.72337 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 7 2.2032 -3.6126 -0.0027 11 6 1.7539 -4.8833 -0.0033 12 8 0.5586 -5.1055 -0.0035 13 7 2.6298 -5.9077 -0.0037 14 7 4.0072 -5.6516 -0.0040 15 6 4.8830 -6.6760 -0.0049 16 8 4.4778 -7.8224 -0.0050 17 6 6.3335 -6.4063 -0.0047 18 6 6.8036 -5.0907 -0.0030 19 6 8.1595 -4.8456 -0.0022 20 7 8.6561 -3.4512 0.0002 21 8 7.8667 -2.5236 0.0019 22 8 9.8541 -3.2314 0.0004 23 6 9.0602 -5.8984 -0.0037 24 6 8.6093 -7.2033 -0.0001 25 6 7.2478 -7.4684 -0.0067 26 8 6.8033 -8.7501 -0.0088 27 1 -0.4851 0.8400 0.0004 28 1 0.6248 -2.5563 -0.8920 29 1 0.6241 -2.5575 0.8880 30 1 3.1568 -3.4353 -0.0029 31 1 2.3065 -6.8223 -0.0045 32 1 4.3305 -4.7371 -0.0036 33 1 6.1052 -4.2670 -0.0024 34 1 10.1212 -5.6971 -0.0035 35 1 9.3176 -8.0186 0.0037 36 1 6.6746 -9.1202 -0.8928 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787365790.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:23 Heat of formation + Delta-G solvation = -62.486856 kcal Electronic energy + Delta-G solvation = -26555.586214 eV Core-core repulsion = 22237.556887 eV Total energy + Delta-G solvation = -4318.029327 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.099 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.29625 -42.07632 -41.12844 -39.82557 -38.16027 -37.68499 -36.90158 -36.27441 -34.32475 -33.68966 -32.23685 -31.41144 -29.17532 -27.33275 -25.72986 -24.98722 -23.76180 -22.59487 -22.19024 -21.10453 -20.15825 -19.80024 -19.67349 -18.91101 -18.60063 -18.27009 -17.41529 -17.12870 -17.09575 -16.78502 -16.69001 -16.21570 -16.06337 -15.82961 -15.13918 -14.95906 -14.57043 -14.20471 -14.04174 -13.83079 -13.72582 -12.94695 -12.76888 -12.74073 -12.60063 -12.45502 -12.28705 -12.26030 -12.17086 -11.75369 -11.49769 -11.32890 -10.81147 -10.73953 -10.51200 -10.14579 -9.47974 -8.27548 -6.43713 -1.39208 -0.75266 0.07941 0.26412 0.55789 1.28377 1.47732 1.50543 1.58323 1.91723 2.01103 2.13919 2.42618 2.71585 2.78169 3.08510 3.17554 3.42594 3.54864 3.76670 3.87797 4.20916 4.31461 4.50484 4.70464 4.92760 4.97954 5.16821 5.24025 5.24917 5.34531 5.40420 5.74863 5.86968 6.04606 6.40847 6.51931 6.55289 6.67648 7.11238 7.24778 7.39034 8.84171 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.010350 B = 0.003856 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.662152 B = 7259.918760 C = 9946.834080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.010 3.990 3 Si 0.979 3.021 4 H -0.262 1.262 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.557 4.557 8 H 0.086 0.914 9 C 0.282 3.718 10 N -0.715 5.715 11 C 0.705 3.295 12 O -0.619 6.619 13 N -0.525 5.525 14 N -0.514 5.514 15 C 0.567 3.433 16 O -0.536 6.536 17 C -0.168 4.168 18 C -0.005 4.005 19 C -0.074 4.074 20 N 0.030 4.970 21 O -0.201 6.201 22 O -0.148 6.148 23 C 0.003 3.997 24 C -0.130 4.130 25 C 0.238 3.762 26 O -0.480 6.480 27 H 0.269 0.731 28 H -0.005 1.005 29 H -0.006 1.006 30 H 0.399 0.601 31 H 0.442 0.558 32 H 0.429 0.571 33 H 0.161 0.839 34 H 0.190 0.810 35 H 0.202 0.798 36 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.024 -16.274 -1.851 29.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.190 4.190 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.595 4.595 8 H 0.104 0.896 9 C 0.159 3.841 10 N -0.370 5.370 11 C 0.404 3.596 12 O -0.496 6.496 13 N -0.282 5.282 14 N -0.266 5.266 15 C 0.355 3.645 16 O -0.412 6.412 17 C -0.174 4.174 18 C -0.025 4.025 19 C -0.157 4.157 20 N 0.546 4.454 21 O -0.407 6.407 22 O -0.370 6.370 23 C -0.016 4.016 24 C -0.148 4.148 25 C 0.190 3.810 26 O -0.297 6.297 27 H 0.078 0.922 28 H 0.013 0.987 29 H 0.012 0.988 30 H 0.235 0.765 31 H 0.289 0.711 32 H 0.273 0.727 33 H 0.178 0.822 34 H 0.207 0.793 35 H 0.219 0.781 36 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 23.365 -17.525 -1.279 29.235 hybrid contribution 0.011 1.519 -0.419 1.576 sum 23.376 -16.006 -1.698 28.381 Atomic orbital electron populations 1.70114 1.08154 1.28660 1.49757 1.25948 0.95669 1.03566 0.93810 0.85287 0.77951 0.76937 0.79582 1.18668 1.21207 1.18763 1.21547 0.94424 0.90272 1.53215 0.89587 1.18567 0.87943 0.82736 0.94826 1.45360 1.10921 1.03744 1.77008 1.15934 0.84024 0.81205 0.78411 1.90968 1.14459 1.83344 1.60870 1.44366 0.92901 1.09383 1.81594 1.44802 0.94828 1.10888 1.76129 1.18031 0.85249 0.84079 0.77151 1.90866 1.79283 1.20673 1.50343 1.19827 0.91764 0.93318 1.12477 1.21105 0.94245 0.97182 0.89956 1.21046 0.94932 0.81114 1.18654 1.43842 1.00688 1.03804 0.97048 1.94655 1.53223 1.37222 1.55591 1.94510 0.99059 1.91127 1.52269 1.21516 1.02199 0.89647 0.88198 1.21809 0.94294 0.97263 1.01463 1.18927 0.90762 0.84142 0.87152 1.84677 1.87415 1.21713 1.35868 0.92205 0.98710 0.98785 0.76473 0.71148 0.72694 0.82181 0.79324 0.78066 0.70711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.86 13.29 21.45 0.28 -54.57 16 2 C 0.01 0.56 5.46 84.66 0.46 1.02 16 3 Si 0.98 41.83 29.54 68.60 2.03 43.85 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 5 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 7 C -0.56 -29.23 9.28 25.60 0.24 -28.99 16 8 H 0.09 4.04 7.60 -2.91 -0.02 4.02 16 9 C 0.28 14.91 5.43 85.63 0.46 15.38 16 10 N -0.72 -28.99 5.51 -482.30 -2.66 -31.65 16 11 C 0.71 28.24 8.68 179.05 1.55 29.79 16 12 O -0.62 -30.66 17.18 -3.98 -0.07 -30.73 16 13 N -0.53 -15.78 6.26 -184.75 -1.16 -16.93 16 14 N -0.51 -11.66 6.21 -175.82 -1.09 -12.75 16 15 C 0.57 11.75 7.88 86.70 0.68 12.43 16 16 O -0.54 -13.66 15.00 16.92 0.25 -13.41 16 17 C -0.17 -2.38 5.89 -20.01 -0.12 -2.50 16 18 C 0.00 -0.07 9.04 22.52 0.20 0.14 16 19 C -0.07 -1.03 6.84 36.34 0.25 -0.78 16 20 N 0.03 0.63 4.45 -46.53 -0.21 0.43 16 21 O -0.20 -5.25 18.43 18.88 0.35 -4.91 16 22 O -0.15 -3.11 18.43 18.89 0.35 -2.76 16 23 C 0.00 0.02 9.54 22.30 0.21 0.23 16 24 C -0.13 -0.46 9.98 22.34 0.22 -0.24 16 25 C 0.24 2.27 6.72 22.84 0.15 2.42 16 26 O -0.48 -4.86 11.58 -68.78 -0.80 -5.66 16 27 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 28 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 29 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 30 H 0.40 13.00 6.24 -92.71 -0.58 12.42 16 31 H 0.44 12.86 8.10 -213.31 -1.73 11.14 16 32 H 0.43 8.30 4.73 -213.33 -1.01 7.29 16 33 H 0.16 2.20 5.94 -2.91 -0.02 2.18 16 34 H 0.19 0.35 7.59 -2.91 -0.02 0.32 16 35 H 0.20 -0.73 8.06 -2.91 -0.02 -0.75 16 36 H 0.43 0.88 9.06 -74.06 -0.67 0.21 16 Total: -1.00 -80.21 333.84 -1.15 -81.36 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: -2.76 Total: 18.83 kcal Atomic # 6 Polarization: 24.58 SS G_CDS: 4.32 Total: 28.90 kcal Atomic # 7 Polarization: -110.65 SS G_CDS: -4.83 Total: -115.48 kcal Atomic # 8 Polarization: -57.55 SS G_CDS: 0.09 Total: -57.47 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.85 kcal Total: -80.21 -1.15 -81.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787365790.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.875 kcal (2) G-P(sol) polarization free energy of solvation -80.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds