Wall clock time and date at job start Tue Mar 31 2020 14:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42108 * 110.54046 * 2 1 4 4 O 1.42101 * 110.54698 * 223.24574 * 2 1 3 5 5 C 1.76196 * 104.44808 * 111.61704 * 2 1 3 6 6 C 1.38377 * 119.84805 * 90.00384 * 5 2 1 7 7 C 1.37941 * 120.15197 * 180.02562 * 6 5 2 8 8 C 1.39628 * 119.84772 * 359.97438 * 7 6 5 9 9 C 1.47727 * 120.14823 * 179.97438 * 8 7 6 10 10 O 1.21469 * 119.99997 * 0.02562 * 9 8 7 11 11 O 1.34706 * 119.99827 * 179.97438 * 9 8 7 12 12 C 1.45209 * 117.00015 * 175.64740 * 11 9 8 13 13 C 1.50699 * 112.90593 * 307.25472 * 12 11 9 14 14 H 1.08002 * 119.99468 * 114.22606 * 13 12 11 15 15 C 1.37877 * 120.00070 * 294.22762 * 13 12 11 16 16 N 1.31506 * 120.00138 * 7.13398 * 15 13 12 17 17 Si 1.86800 * 119.99635 * 187.12935 * 15 13 12 18 18 H 1.48498 * 109.46945 * 60.00601 * 17 15 13 19 19 H 1.48505 * 109.47052 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47523 * 300.00434 * 17 15 13 21 21 C 1.53782 * 113.61421 * 176.00522 * 12 11 9 22 22 C 1.53782 * 87.17040 * 220.06232 * 21 12 11 23 23 C 1.53781 * 87.08150 * 25.39110 * 22 21 12 24 24 C 1.39631 * 119.70253 * 0.25620 * 8 7 6 25 25 C 1.37950 * 119.84437 * 359.51104 * 24 8 7 26 26 H 1.08996 * 109.47636 * 308.38153 * 1 2 3 27 27 H 1.09004 * 109.47233 * 68.38095 * 1 2 3 28 28 H 1.09000 * 109.47122 * 188.37826 * 1 2 3 29 29 H 1.08003 * 119.92110 * 0.02562 * 6 5 2 30 30 H 1.07995 * 120.07384 * 179.97438 * 7 6 5 31 31 H 0.97000 * 120.00036 * 174.97110 * 16 15 13 32 32 H 1.08997 * 113.61170 * 105.47210 * 21 12 11 33 33 H 1.09002 * 113.61162 * 334.65084 * 21 12 11 34 34 H 1.08998 * 113.61192 * 139.93689 * 22 21 12 35 35 H 1.08996 * 113.61404 * 270.76011 * 22 21 12 36 36 H 1.09005 * 113.61633 * 89.11493 * 23 22 21 37 37 H 1.09001 * 113.61283 * 219.93334 * 23 22 21 38 38 H 1.08002 * 120.07689 * 179.72002 * 24 8 7 39 39 H 1.08001 * 119.92268 * 180.23189 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9116 5 6 2.2536 -0.6286 1.5862 6 6 2.4255 -1.9901 1.7641 7 6 2.7691 -2.4890 3.0033 8 6 2.9441 -1.6168 4.0795 9 6 3.3115 -2.1440 5.4097 10 8 3.4627 -3.3387 5.5689 11 8 3.4800 -1.2997 6.4457 12 6 3.7448 -1.8939 7.7440 13 6 2.7267 -2.9354 8.1310 14 1 3.0224 -3.9696 8.2279 15 6 1.4179 -2.5680 8.3613 16 7 1.0259 -1.3384 8.1085 17 14 0.2016 -3.8168 9.0324 18 1 0.6738 -4.3081 10.3518 19 1 -1.1289 -3.1764 9.1905 20 1 0.0930 -4.9585 8.0891 21 6 4.0202 -0.8610 8.8495 22 6 5.1137 -1.8135 9.3613 23 6 5.2014 -2.3578 7.9257 24 6 2.7643 -0.2445 3.8942 25 6 2.4254 0.2414 2.6484 26 1 -0.3634 0.6380 0.8055 27 1 -0.3634 0.3786 -0.9554 28 1 -0.3633 -1.0167 0.1497 29 1 2.2903 -2.6636 0.9306 30 1 2.9026 -3.5518 3.1408 31 1 0.0905 -1.0989 8.2009 32 1 3.1908 -0.7345 9.5452 33 1 4.4070 0.0868 8.4750 34 1 6.0185 -1.3027 9.6906 35 1 4.7527 -2.5439 10.0853 36 1 5.9113 -1.8198 7.2973 37 1 5.3270 -3.4394 7.8758 38 1 2.8936 0.4352 4.7235 39 1 2.2897 1.3029 2.5028 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788145250.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:49 Heat of formation + Delta-G solvation = -99.266807 kcal Electronic energy + Delta-G solvation = -25260.826410 eV Core-core repulsion = 21455.202648 eV Total energy + Delta-G solvation = -3805.623762 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.75680 -38.62589 -37.25672 -36.95006 -36.09191 -34.30460 -32.38979 -31.47728 -31.01429 -29.73890 -26.34541 -24.75656 -24.58365 -22.99457 -22.54308 -20.31783 -19.15914 -18.65941 -17.98373 -17.24787 -16.40438 -16.26032 -16.04070 -15.28641 -14.95487 -14.74800 -14.55816 -14.39440 -13.90365 -13.84764 -13.50847 -13.45754 -13.43130 -12.95110 -12.62874 -12.24763 -12.23913 -12.12961 -11.68367 -11.33014 -11.28657 -11.17347 -11.07485 -10.95729 -10.80790 -10.49281 -10.36304 -10.05381 -9.88710 -9.50848 -9.24930 -9.01726 -8.89097 -8.64355 -8.61951 -6.21536 -4.31894 -0.13723 0.55029 1.36050 2.67499 3.02946 3.21484 3.25724 3.30350 3.67694 3.77793 3.94309 4.14710 4.27878 4.51138 4.62661 4.85287 4.88629 5.07672 5.35367 5.37636 5.39205 5.52189 5.68564 5.69521 5.79875 5.90661 5.95597 6.10158 6.20011 6.33928 6.43930 6.54846 6.58378 6.81689 6.82999 7.04131 7.23130 7.47075 7.65916 7.78036 8.23827 8.72117 9.04116 9.36887 10.82707 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.018314 B = 0.003488 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.498377 B = 8025.858496 C = 8616.668433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.503 3.497 3 O -0.939 6.939 4 O -0.940 6.940 5 C -0.650 4.650 6 C -0.039 4.039 7 C -0.089 4.089 8 C -0.046 4.046 9 C 0.500 3.500 10 O -0.491 6.491 11 O -0.342 6.342 12 C 0.238 3.762 13 C -0.511 4.511 14 H 0.069 0.931 15 C 0.075 3.925 16 N -0.864 5.864 17 Si 0.894 3.106 18 H -0.272 1.272 19 H -0.286 1.286 20 H -0.275 1.275 21 C -0.106 4.106 22 C -0.131 4.131 23 C -0.160 4.160 24 C -0.085 4.085 25 C -0.039 4.039 26 H 0.133 0.867 27 H 0.130 0.870 28 H 0.133 0.867 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.264 0.736 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.150 0.850 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.294 4.205 -12.007 12.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.683 3.317 3 O -0.936 6.936 4 O -0.937 6.937 5 C -0.737 4.737 6 C -0.058 4.058 7 C -0.108 4.108 8 C -0.047 4.047 9 C 0.342 3.658 10 O -0.380 6.380 11 O -0.258 6.258 12 C 0.205 3.795 13 C -0.548 4.548 14 H 0.087 0.913 15 C -0.131 4.131 16 N -0.500 5.500 17 Si 0.721 3.279 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.143 4.143 22 C -0.168 4.168 23 C -0.198 4.198 24 C -0.104 4.104 25 C -0.058 4.058 26 H 0.152 0.848 27 H 0.148 0.852 28 H 0.151 0.849 29 H 0.163 0.837 30 H 0.162 0.838 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.167 0.833 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.800 4.264 -12.463 13.197 hybrid contribution -1.311 -1.033 1.143 2.022 sum -2.111 3.231 -11.320 11.960 Atomic orbital electron populations 1.30220 1.25728 1.12283 1.11759 1.05033 0.77796 0.74566 0.74273 1.93584 1.77334 1.36541 1.86127 1.93579 1.77357 1.61660 1.61105 1.30569 1.18186 1.03064 1.21839 1.20819 0.94409 0.93095 0.97473 1.21427 0.97173 1.00898 0.91339 1.20147 0.97324 0.94339 0.92932 1.20520 0.75297 0.85265 0.84739 1.90736 1.45995 1.16614 1.84685 1.86506 1.79473 1.41210 1.18648 1.21318 0.90232 0.91758 0.76222 1.20923 0.93296 0.93789 1.46776 0.91282 1.25067 0.98470 0.95252 0.94316 1.70008 1.16459 1.17529 1.45983 0.86613 0.79883 0.81500 0.79921 1.19748 1.21110 1.19993 1.22887 0.97544 0.96126 0.97792 1.22513 0.98071 0.99723 0.96509 1.23573 0.99122 1.00586 0.96498 1.21711 0.96023 0.95025 0.97644 1.20913 0.94059 0.99475 0.91346 0.84797 0.85156 0.84884 0.83745 0.83762 0.92588 0.90542 0.92214 0.92890 0.90187 0.92050 0.91935 0.83258 0.83741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -3.60 10.80 101.05 1.09 -2.51 16 2 S 2.50 23.90 5.80 -107.50 -0.62 23.27 16 3 O -0.94 -11.69 17.11 -57.54 -0.98 -12.68 16 4 O -0.94 -11.62 17.11 -57.54 -0.98 -12.61 16 5 C -0.65 -7.89 5.66 -39.48 -0.22 -8.11 16 6 C -0.04 -0.51 9.45 -39.64 -0.37 -0.88 16 7 C -0.09 -1.42 9.60 -39.17 -0.38 -1.80 16 8 C -0.05 -0.86 5.87 -104.98 -0.62 -1.47 16 9 C 0.50 11.50 7.49 34.61 0.26 11.76 16 10 O -0.49 -12.38 14.80 -19.24 -0.28 -12.66 16 11 O -0.34 -8.28 9.19 -40.51 -0.37 -8.66 16 12 C 0.24 5.80 0.49 -90.87 -0.04 5.76 16 13 C -0.51 -13.66 6.42 -34.44 -0.22 -13.89 16 14 H 0.07 1.91 7.82 -52.49 -0.41 1.50 16 15 C 0.07 1.99 5.20 -17.82 -0.09 1.89 16 16 N -0.86 -23.30 12.58 55.43 0.70 -22.60 16 17 Si 0.89 20.77 29.55 -169.99 -5.02 15.75 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 C -0.11 -2.33 7.19 -25.92 -0.19 -2.52 16 22 C -0.13 -2.54 7.81 -25.92 -0.20 -2.75 16 23 C -0.16 -3.43 7.22 -25.83 -0.19 -3.61 16 24 C -0.09 -1.37 9.62 -39.17 -0.38 -1.75 16 25 C -0.04 -0.51 9.45 -39.64 -0.37 -0.89 16 26 H 0.13 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.13 0.48 8.14 -51.92 -0.42 0.06 16 28 H 0.13 0.59 8.14 -51.92 -0.42 0.17 16 29 H 0.14 1.47 7.56 -52.48 -0.40 1.08 16 30 H 0.14 2.23 7.65 -52.49 -0.40 1.83 16 31 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 32 H 0.08 1.82 7.64 -51.93 -0.40 1.42 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.06 1.37 8.10 -51.93 -0.42 0.95 16 38 H 0.15 2.40 7.61 -52.49 -0.40 2.00 16 39 H 0.14 1.52 7.56 -52.49 -0.40 1.13 16 LS Contribution 348.97 15.07 5.26 5.26 Total: -1.00 -34.50 348.97 -9.16 -43.65 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -4.92 Total: 2.03 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: -1.93 Total: -20.75 kcal Atomic # 7 Polarization: -23.30 SS G_CDS: 0.70 Total: -22.60 kcal Atomic # 8 Polarization: -43.98 SS G_CDS: -2.63 Total: -46.60 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 23.90 SS G_CDS: -0.62 Total: 23.27 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.50 -9.16 -43.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788145250.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.612 kcal (2) G-P(sol) polarization free energy of solvation -34.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds