Wall clock time and date at job start Tue Mar 31 2020 14:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42108 * 110.54046 * 2 1 4 4 O 1.42101 * 110.54698 * 223.24574 * 2 1 3 5 5 C 1.76196 * 104.44808 * 111.61704 * 2 1 3 6 6 C 1.38377 * 119.84805 * 90.00384 * 5 2 1 7 7 C 1.37941 * 120.15197 * 180.02562 * 6 5 2 8 8 C 1.39628 * 119.84772 * 359.97438 * 7 6 5 9 9 C 1.47727 * 120.14823 * 179.97438 * 8 7 6 10 10 O 1.21469 * 119.99997 * 0.02562 * 9 8 7 11 11 O 1.34706 * 119.99827 * 179.97438 * 9 8 7 12 12 C 1.45209 * 117.00015 * 175.64740 * 11 9 8 13 13 C 1.50699 * 112.90593 * 307.25472 * 12 11 9 14 14 H 1.08002 * 119.99468 * 114.22606 * 13 12 11 15 15 C 1.37877 * 120.00070 * 294.22762 * 13 12 11 16 16 N 1.31506 * 120.00138 * 7.13398 * 15 13 12 17 17 Si 1.86800 * 119.99635 * 187.12935 * 15 13 12 18 18 H 1.48498 * 109.46945 * 60.00601 * 17 15 13 19 19 H 1.48505 * 109.47052 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47523 * 300.00434 * 17 15 13 21 21 C 1.53782 * 113.61421 * 176.00522 * 12 11 9 22 22 C 1.53782 * 87.17040 * 220.06232 * 21 12 11 23 23 C 1.53781 * 87.08150 * 25.39110 * 22 21 12 24 24 C 1.39631 * 119.70253 * 0.25620 * 8 7 6 25 25 C 1.37950 * 119.84437 * 359.51104 * 24 8 7 26 26 H 1.08996 * 109.47636 * 308.38153 * 1 2 3 27 27 H 1.09004 * 109.47233 * 68.38095 * 1 2 3 28 28 H 1.09000 * 109.47122 * 188.37826 * 1 2 3 29 29 H 1.08003 * 119.92110 * 0.02562 * 6 5 2 30 30 H 1.07995 * 120.07384 * 179.97438 * 7 6 5 31 31 H 0.97000 * 120.00036 * 174.97110 * 16 15 13 32 32 H 1.08997 * 113.61170 * 105.47210 * 21 12 11 33 33 H 1.09002 * 113.61162 * 334.65084 * 21 12 11 34 34 H 1.08998 * 113.61192 * 139.93689 * 22 21 12 35 35 H 1.08996 * 113.61404 * 270.76011 * 22 21 12 36 36 H 1.09005 * 113.61633 * 89.11493 * 23 22 21 37 37 H 1.09001 * 113.61283 * 219.93334 * 23 22 21 38 38 H 1.08002 * 120.07689 * 179.72002 * 24 8 7 39 39 H 1.08001 * 119.92268 * 180.23189 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9116 5 6 2.2536 -0.6286 1.5862 6 6 2.4255 -1.9901 1.7641 7 6 2.7691 -2.4890 3.0033 8 6 2.9441 -1.6168 4.0795 9 6 3.3115 -2.1440 5.4097 10 8 3.4627 -3.3387 5.5689 11 8 3.4800 -1.2997 6.4457 12 6 3.7448 -1.8939 7.7440 13 6 2.7267 -2.9354 8.1310 14 1 3.0224 -3.9696 8.2279 15 6 1.4179 -2.5680 8.3613 16 7 1.0259 -1.3384 8.1085 17 14 0.2016 -3.8168 9.0324 18 1 0.6738 -4.3081 10.3518 19 1 -1.1289 -3.1764 9.1905 20 1 0.0930 -4.9585 8.0891 21 6 4.0202 -0.8610 8.8495 22 6 5.1137 -1.8135 9.3613 23 6 5.2014 -2.3578 7.9257 24 6 2.7643 -0.2445 3.8942 25 6 2.4254 0.2414 2.6484 26 1 -0.3634 0.6380 0.8055 27 1 -0.3634 0.3786 -0.9554 28 1 -0.3633 -1.0167 0.1497 29 1 2.2903 -2.6636 0.9306 30 1 2.9026 -3.5518 3.1408 31 1 0.0905 -1.0989 8.2009 32 1 3.1908 -0.7345 9.5452 33 1 4.4070 0.0868 8.4750 34 1 6.0185 -1.3027 9.6906 35 1 4.7527 -2.5439 10.0853 36 1 5.9113 -1.8198 7.2973 37 1 5.3270 -3.4394 7.8758 38 1 2.8936 0.4352 4.7235 39 1 2.2897 1.3029 2.5028 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788145250.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:48 Heat of formation + Delta-G solvation = -121.998059 kcal Electronic energy + Delta-G solvation = -25261.812111 eV Core-core repulsion = 21455.202648 eV Total energy + Delta-G solvation = -3806.609463 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.35965 -40.05980 -38.65012 -38.12198 -36.95984 -36.12913 -34.40454 -32.70879 -32.17415 -30.22937 -28.27328 -26.41206 -26.19431 -24.52392 -23.79374 -21.83685 -20.51056 -20.04799 -19.17619 -18.77381 -17.87156 -17.23827 -17.10353 -16.89011 -16.81842 -16.22312 -15.96689 -15.75698 -15.58401 -15.16396 -14.61952 -14.45923 -14.17221 -13.90031 -13.88771 -13.73563 -13.54870 -13.11705 -13.07610 -13.02136 -12.97704 -12.80533 -12.32781 -12.24322 -12.16018 -12.12844 -11.91380 -11.73423 -11.67494 -11.27319 -10.82778 -10.58501 -10.52810 -10.41962 -10.16423 -8.23233 -6.39201 -0.91634 -0.63212 0.20203 1.34226 1.34791 1.42987 1.57296 1.89707 2.15334 2.33774 2.60077 3.04128 3.07307 3.18241 3.67149 3.83241 3.85941 3.98477 4.07135 4.16027 4.16841 4.20434 4.31504 4.41801 4.51218 4.53521 4.82918 4.84711 4.89580 4.92498 4.98764 5.03076 5.12084 5.24863 5.34992 5.41548 5.60834 5.65928 5.73942 5.89255 6.35911 6.64145 7.20253 7.33948 8.80345 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.018314 B = 0.003488 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.498377 B = 8025.858496 C = 8616.668433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.625 4.625 2 S 2.518 3.482 3 O -0.968 6.968 4 O -0.968 6.968 5 C -0.640 4.640 6 C -0.034 4.034 7 C -0.097 4.097 8 C -0.084 4.084 9 C 0.493 3.507 10 O -0.529 6.529 11 O -0.352 6.352 12 C 0.212 3.788 13 C -0.526 4.526 14 H 0.047 0.953 15 C 0.036 3.964 16 N -0.884 5.884 17 Si 0.946 3.054 18 H -0.264 1.264 19 H -0.275 1.275 20 H -0.283 1.283 21 C -0.103 4.103 22 C -0.110 4.110 23 C -0.156 4.156 24 C -0.093 4.093 25 C -0.035 4.035 26 H 0.152 0.848 27 H 0.159 0.841 28 H 0.152 0.848 29 H 0.176 0.824 30 H 0.139 0.861 31 H 0.266 0.734 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.048 0.952 38 H 0.142 0.858 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.588 5.245 -13.716 14.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.779 4.779 2 S 2.699 3.301 3 O -0.966 6.966 4 O -0.966 6.966 5 C -0.724 4.724 6 C -0.052 4.052 7 C -0.116 4.116 8 C -0.085 4.085 9 C 0.337 3.663 10 O -0.420 6.420 11 O -0.268 6.268 12 C 0.178 3.822 13 C -0.563 4.563 14 H 0.065 0.935 15 C -0.168 4.168 16 N -0.521 5.521 17 Si 0.771 3.229 18 H -0.188 1.188 19 H -0.200 1.200 20 H -0.209 1.209 21 C -0.141 4.141 22 C -0.148 4.148 23 C -0.194 4.194 24 C -0.112 4.112 25 C -0.053 4.053 26 H 0.170 0.830 27 H 0.177 0.823 28 H 0.171 0.829 29 H 0.193 0.807 30 H 0.157 0.843 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.159 0.841 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -2.034 5.304 -14.132 15.231 hybrid contribution -0.969 -1.310 1.486 2.205 sum -3.003 3.994 -12.646 13.597 Atomic orbital electron populations 1.30045 1.19198 1.14391 1.14270 1.04780 0.79970 0.73046 0.72285 1.93549 1.79707 1.37478 1.85817 1.93545 1.79708 1.62264 1.61041 1.31191 1.15593 1.02562 1.23015 1.21150 0.93015 0.94152 0.96875 1.21510 0.97627 1.00499 0.91979 1.19994 1.01313 0.95921 0.91297 1.21310 0.74116 0.84931 0.85913 1.90689 1.47911 1.17917 1.85506 1.86476 1.79738 1.41526 1.19031 1.21578 0.91266 0.92550 0.76808 1.20984 0.94510 0.93361 1.47456 0.93482 1.25658 0.99745 0.96862 0.94493 1.70082 1.16715 1.18582 1.46696 0.85813 0.78464 0.79293 0.79363 1.18840 1.19957 1.20912 1.22856 0.97765 0.96795 0.96687 1.22434 0.98576 0.98687 0.95075 1.23527 0.97676 0.99896 0.98267 1.21716 0.96622 0.93845 0.98985 1.21212 0.92832 1.01120 0.90183 0.82981 0.82266 0.82927 0.80686 0.84294 0.92500 0.92761 0.90893 0.88997 0.90594 0.90753 0.93335 0.84051 0.80887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -3.58 10.80 113.37 1.22 -2.36 16 2 S 2.52 40.01 5.80 -56.49 -0.33 39.69 16 3 O -0.97 -21.56 17.11 -127.65 -2.18 -23.74 16 4 O -0.97 -21.33 17.11 -127.65 -2.18 -23.52 16 5 C -0.64 -14.11 5.66 22.33 0.13 -13.98 16 6 C -0.03 -0.82 9.45 22.23 0.21 -0.61 16 7 C -0.10 -3.15 9.60 22.54 0.22 -2.93 16 8 C -0.08 -3.24 5.87 -20.10 -0.12 -3.36 16 9 C 0.49 23.88 7.49 70.33 0.53 24.41 16 10 O -0.53 -28.25 14.80 19.94 0.30 -27.96 16 11 O -0.35 -17.74 9.19 -56.15 -0.52 -18.26 16 12 C 0.21 10.64 0.49 -10.96 -0.01 10.64 16 13 C -0.53 -29.23 6.42 25.60 0.16 -29.06 16 14 H 0.05 2.74 7.82 -2.91 -0.02 2.72 16 15 C 0.04 1.96 5.20 84.66 0.44 2.40 16 16 N -0.88 -48.78 12.58 21.45 0.27 -48.51 16 17 Si 0.95 43.39 29.55 68.60 2.03 45.41 16 18 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 20 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 21 C -0.10 -4.60 7.19 31.12 0.22 -4.37 16 22 C -0.11 -4.22 7.81 31.12 0.24 -3.97 16 23 C -0.16 -6.78 7.22 31.18 0.23 -6.56 16 24 C -0.09 -3.03 9.62 22.54 0.22 -2.82 16 25 C -0.04 -0.87 9.45 22.23 0.21 -0.66 16 26 H 0.15 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.16 0.21 8.14 -2.39 -0.02 0.19 16 28 H 0.15 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.18 3.12 7.56 -2.91 -0.02 3.09 16 30 H 0.14 4.52 7.65 -2.91 -0.02 4.49 16 31 H 0.27 13.94 8.32 -92.71 -0.77 13.16 16 32 H 0.05 2.63 7.64 -2.39 -0.02 2.61 16 33 H 0.07 2.99 8.14 -2.39 -0.02 2.98 16 34 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 35 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 36 H 0.07 2.99 8.14 -2.38 -0.02 2.97 16 37 H 0.05 2.20 8.10 -2.39 -0.02 2.18 16 38 H 0.14 4.73 7.61 -2.91 -0.02 4.70 16 39 H 0.17 3.22 7.56 -2.91 -0.02 3.20 16 Total: -1.00 -78.32 348.97 2.35 -75.97 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 1.06 Total: 14.15 kcal Atomic # 6 Polarization: -37.14 SS G_CDS: 3.90 Total: -33.24 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: 0.27 Total: -48.51 kcal Atomic # 8 Polarization: -88.89 SS G_CDS: -4.59 Total: -93.48 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: 40.01 SS G_CDS: -0.33 Total: 39.69 kcal Total: -78.32 2.35 -75.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788145250.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.026 kcal (2) G-P(sol) polarization free energy of solvation -78.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds