Wall clock time and date at job start Tue Mar 31 2020 14:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86794 * 119.99822 * 2 1 4 4 H 1.48499 * 109.47410 * 239.99554 * 3 2 1 5 5 H 1.48498 * 109.47284 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47110 * 119.99767 * 3 2 1 7 7 C 1.38698 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99679 * 180.02562 * 7 2 1 9 9 O 1.34815 * 120.00240 * 0.02562 * 7 2 1 10 10 C 1.35520 * 117.00062 * 185.01693 * 9 7 2 11 11 C 1.38834 * 120.16006 * 354.83909 * 10 9 7 12 12 C 1.38032 * 120.06966 * 180.02562 * 11 10 9 13 13 C 1.38575 * 120.40473 * 359.71209 * 12 11 10 14 14 C 1.37821 * 120.32519 * 0.56872 * 13 12 11 15 15 C 1.39682 * 119.91672 * 359.43760 * 14 13 12 16 16 C 1.47499 * 120.19557 * 180.25674 * 15 14 13 17 17 O 1.21613 * 119.99947 * 179.97438 * 16 15 14 18 18 N 1.34777 * 120.00233 * 0.02562 * 16 15 14 19 19 C 1.39758 * 120.00076 * 185.56096 * 18 16 15 20 20 C 1.38418 * 120.19962 * 24.82373 * 19 18 16 21 21 C 1.38561 * 120.33156 * 179.78455 * 20 19 18 22 22 C 1.37987 * 120.54790 * 0.47535 * 21 20 19 23 23 C 1.38738 * 120.01855 * 359.78082 * 22 21 20 24 24 O 1.35114 * 133.90337 * 179.97438 * 23 22 21 25 25 C 1.34275 * 108.15203 * 180.02562 * 24 23 22 26 26 N 1.29891 * 110.25467 * 359.97438 * 25 24 23 27 27 C 1.36015 * 108.80096 * 0.02562 * 26 25 24 28 28 H 0.96995 * 120.00509 * 0.02562 * 1 2 3 29 29 H 1.07993 * 119.96747 * 359.97438 * 11 10 9 30 30 H 1.08001 * 119.79182 * 180.02562 * 12 11 10 31 31 H 1.08003 * 119.83637 * 180.30170 * 13 12 11 32 32 H 1.08000 * 120.04025 * 179.71248 * 14 13 12 33 33 H 0.96993 * 119.99833 * 5.56369 * 18 16 15 34 34 H 1.08005 * 119.83654 * 0.02562 * 20 19 18 35 35 H 1.08004 * 119.72785 * 180.23476 * 21 20 19 36 36 H 1.07999 * 119.98927 * 179.76461 * 22 21 20 37 37 H 1.08003 * 124.87533 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0087 -1.2012 0.0005 8 1 3.0888 -1.2011 0.0010 9 8 1.3347 -2.3687 0.0005 10 6 2.0688 -3.5029 0.1067 11 6 3.4556 -3.4392 0.1014 12 6 4.2015 -4.5957 0.2091 13 6 3.5748 -5.8258 0.3290 14 6 2.1991 -5.9087 0.3302 15 6 1.4310 -4.7471 0.2220 16 6 -0.0417 -4.8281 0.2283 17 8 -0.7069 -3.8144 0.1343 18 7 -0.6503 -6.0256 0.3393 19 6 -2.0405 -6.1158 0.2288 20 6 -2.7469 -5.1555 -0.4747 21 6 -4.1248 -5.2447 -0.5898 22 6 -4.8122 -6.2845 0.0022 23 6 -4.1234 -7.2543 0.7162 24 8 -4.4977 -8.3631 1.3917 25 6 -3.3944 -8.9363 1.8988 26 7 -2.3414 -8.2468 1.5779 27 6 -2.7286 -7.1757 0.8344 28 1 -0.4850 0.8400 -0.0004 29 1 3.9514 -2.4840 0.0122 30 1 5.2801 -4.5409 0.2050 31 1 4.1674 -6.7244 0.4176 32 1 1.7155 -6.8703 0.4192 33 1 -0.1233 -6.8247 0.4959 34 1 -2.2209 -4.3347 -0.9397 35 1 -4.6658 -4.4921 -1.1442 36 1 -5.8866 -6.3431 -0.0900 37 1 -3.3840 -9.8409 2.4888 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791001353.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:09 Heat of formation + Delta-G solvation = 22.152087 kcal Electronic energy + Delta-G solvation = -26057.948210 eV Core-core repulsion = 22154.438366 eV Total energy + Delta-G solvation = -3903.509844 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.20030 -40.11391 -38.81026 -37.22952 -36.42499 -34.87845 -33.99609 -32.41782 -30.97399 -29.79074 -29.04309 -28.70458 -25.48119 -24.15330 -23.30326 -23.08090 -21.88931 -21.12118 -20.00705 -18.44961 -18.15781 -17.89621 -17.13646 -16.65309 -16.18282 -16.08315 -15.45232 -14.73497 -14.68116 -14.40285 -14.34956 -14.02069 -13.84033 -13.63735 -13.19964 -12.93546 -12.61735 -12.49926 -12.07490 -11.91423 -11.77560 -11.48170 -11.39763 -11.17951 -10.94368 -10.87398 -10.63927 -10.52720 -10.08073 -9.65112 -9.01129 -8.93790 -8.63274 -8.38529 -7.67100 -7.38270 -6.51904 -4.11528 0.74286 1.32755 1.63957 2.25130 2.45910 2.59750 3.08129 3.10253 3.12724 3.32986 3.43113 3.84469 3.87976 3.93194 4.54013 4.72993 4.93125 4.98407 5.08106 5.09515 5.20916 5.38316 5.45314 5.46585 5.64049 5.78990 5.98289 6.03120 6.06935 6.14990 6.30091 6.44606 6.48327 6.60087 6.64384 6.83565 6.97876 7.01762 7.15469 7.22070 7.57279 7.60997 7.77536 7.88897 8.76164 8.88234 9.57417 10.61514 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.014393 B = 0.003707 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.897013 B = 7551.335340 C = 9259.958377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.046 3.954 3 Si 0.942 3.058 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.404 4.404 8 H 0.095 0.905 9 O -0.122 6.122 10 C 0.191 3.809 11 C -0.236 4.236 12 C -0.047 4.047 13 C -0.228 4.228 14 C -0.035 4.035 15 C -0.232 4.232 16 C 0.553 3.447 17 O -0.476 6.476 18 N -0.671 5.671 19 C 0.235 3.765 20 C -0.147 4.147 21 C -0.055 4.055 22 C -0.136 4.136 23 C 0.036 3.964 24 O -0.221 6.221 25 C 0.210 3.790 26 N -0.474 5.474 27 C -0.026 4.026 28 H 0.273 0.727 29 H 0.133 0.867 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.410 0.590 34 H 0.166 0.834 35 H 0.143 0.857 36 H 0.132 0.868 37 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.874 -14.186 0.586 14.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.162 4.162 3 Si 0.765 3.235 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.480 4.480 8 H 0.112 0.888 9 O -0.020 6.020 10 C 0.131 3.869 11 C -0.255 4.255 12 C -0.066 4.066 13 C -0.247 4.247 14 C -0.054 4.054 15 C -0.237 4.237 16 C 0.345 3.655 17 O -0.349 6.349 18 N -0.315 5.315 19 C 0.136 3.864 20 C -0.169 4.169 21 C -0.074 4.074 22 C -0.156 4.156 23 C -0.015 4.015 24 O -0.112 6.112 25 C -0.022 4.022 26 N -0.203 5.203 27 C -0.139 4.139 28 H 0.083 0.917 29 H 0.151 0.849 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.247 0.753 34 H 0.183 0.817 35 H 0.161 0.839 36 H 0.150 0.850 37 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -4.099 -13.248 0.640 13.882 hybrid contribution 0.222 0.240 0.156 0.362 sum -3.877 -13.008 0.796 13.597 Atomic orbital electron populations 1.70101 1.05985 1.28033 1.41997 1.25391 0.95831 0.98990 0.96011 0.85781 0.78820 0.79534 0.79322 1.19301 1.20091 1.19321 1.21476 0.91951 0.81000 1.53545 0.88791 1.84146 1.33693 1.11056 1.73075 1.19206 0.89909 0.87166 0.90592 1.21164 0.93263 0.99413 1.11630 1.20937 0.98773 0.92259 0.94614 1.20473 0.93943 0.97262 1.13054 1.20788 0.94035 0.95471 0.95094 1.18613 0.90822 0.92433 1.21859 1.18445 0.88361 0.82055 0.76630 1.90910 1.65248 1.33535 1.45241 1.43615 1.04431 1.11457 1.72006 1.16971 0.83531 0.92431 0.93515 1.21542 0.94349 1.00687 1.00337 1.20983 0.93701 0.95949 0.96790 1.19761 1.00047 0.93888 1.01931 1.20044 0.93571 0.89249 0.98614 1.84512 1.36860 1.33563 1.56248 1.28042 0.77632 0.99036 0.97454 1.70434 1.30500 1.05067 1.14257 1.19396 0.91744 0.98256 1.04497 0.91677 0.84901 0.86989 0.87048 0.86959 0.75264 0.81723 0.83888 0.84999 0.73211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.27 13.67 55.48 0.76 -23.51 16 2 C 0.05 1.25 5.49 -17.51 -0.10 1.15 16 3 Si 0.94 20.00 29.55 -169.99 -5.02 14.98 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 7 C -0.40 -11.11 9.49 30.90 0.29 -10.82 16 8 H 0.09 2.33 5.20 -52.48 -0.27 2.06 16 9 O -0.12 -3.48 7.84 -21.06 -0.17 -3.65 16 10 C 0.19 4.62 6.66 -38.59 -0.26 4.37 16 11 C -0.24 -4.91 9.16 -39.44 -0.36 -5.27 16 12 C -0.05 -0.81 10.03 -39.53 -0.40 -1.21 16 13 C -0.23 -3.68 10.02 -39.61 -0.40 -4.08 16 14 C -0.04 -0.60 9.53 -39.20 -0.37 -0.98 16 15 C -0.23 -4.97 5.89 -104.82 -0.62 -5.59 16 16 C 0.55 12.07 7.57 -12.49 -0.09 11.98 16 17 O -0.48 -12.36 12.34 -16.59 -0.20 -12.56 16 18 N -0.67 -12.02 5.31 -10.65 -0.06 -12.07 16 19 C 0.23 4.13 6.46 -83.47 -0.54 3.60 16 20 C -0.15 -2.56 8.71 -39.40 -0.34 -2.90 16 21 C -0.06 -0.77 10.02 -39.55 -0.40 -1.16 16 22 C -0.14 -1.76 10.06 -39.49 -0.40 -2.16 16 23 C 0.04 0.52 7.43 -38.66 -0.29 0.23 16 24 O -0.22 -2.73 10.77 3.50 0.04 -2.69 16 25 C 0.21 2.18 13.13 51.94 0.68 2.86 16 26 N -0.47 -6.75 11.33 -12.44 -0.14 -6.89 16 27 C -0.03 -0.41 7.14 -84.56 -0.60 -1.02 16 28 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.13 2.72 5.63 -52.49 -0.30 2.42 16 30 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 32 H 0.11 1.55 6.42 -52.49 -0.34 1.21 16 33 H 0.41 6.30 6.84 -40.82 -0.28 6.03 16 34 H 0.17 3.29 5.77 -52.48 -0.30 2.99 16 35 H 0.14 1.57 8.06 -52.48 -0.42 1.15 16 36 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 37 H 0.25 1.07 8.06 -52.48 -0.42 0.65 16 LS Contribution 327.37 15.07 4.93 4.93 Total: -1.00 -34.69 327.37 -6.78 -41.47 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -2.74 Total: 10.98 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -4.18 Total: -11.00 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: 0.56 Total: -42.47 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.33 Total: -18.90 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.69 -6.78 -41.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791001353.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.626 kcal (2) G-P(sol) polarization free energy of solvation -34.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds