Wall clock time and date at job start Tue Mar 31 2020 14:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86794 * 119.99822 * 2 1 4 4 H 1.48499 * 109.47410 * 239.99554 * 3 2 1 5 5 H 1.48498 * 109.47284 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47110 * 119.99767 * 3 2 1 7 7 C 1.38698 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99679 * 180.02562 * 7 2 1 9 9 O 1.34815 * 120.00240 * 0.02562 * 7 2 1 10 10 C 1.35520 * 117.00062 * 185.01693 * 9 7 2 11 11 C 1.38834 * 120.16006 * 354.83909 * 10 9 7 12 12 C 1.38032 * 120.06966 * 180.02562 * 11 10 9 13 13 C 1.38575 * 120.40473 * 359.71209 * 12 11 10 14 14 C 1.37821 * 120.32519 * 0.56872 * 13 12 11 15 15 C 1.39682 * 119.91672 * 359.43760 * 14 13 12 16 16 C 1.47499 * 120.19557 * 180.25674 * 15 14 13 17 17 O 1.21613 * 119.99947 * 179.97438 * 16 15 14 18 18 N 1.34777 * 120.00233 * 0.02562 * 16 15 14 19 19 C 1.39758 * 120.00076 * 185.56096 * 18 16 15 20 20 C 1.38418 * 120.19962 * 24.82373 * 19 18 16 21 21 C 1.38561 * 120.33156 * 179.78455 * 20 19 18 22 22 C 1.37987 * 120.54790 * 0.47535 * 21 20 19 23 23 C 1.38738 * 120.01855 * 359.78082 * 22 21 20 24 24 O 1.35114 * 133.90337 * 179.97438 * 23 22 21 25 25 C 1.34275 * 108.15203 * 180.02562 * 24 23 22 26 26 N 1.29891 * 110.25467 * 359.97438 * 25 24 23 27 27 C 1.36015 * 108.80096 * 0.02562 * 26 25 24 28 28 H 0.96995 * 120.00509 * 0.02562 * 1 2 3 29 29 H 1.07993 * 119.96747 * 359.97438 * 11 10 9 30 30 H 1.08001 * 119.79182 * 180.02562 * 12 11 10 31 31 H 1.08003 * 119.83637 * 180.30170 * 13 12 11 32 32 H 1.08000 * 120.04025 * 179.71248 * 14 13 12 33 33 H 0.96993 * 119.99833 * 5.56369 * 18 16 15 34 34 H 1.08005 * 119.83654 * 0.02562 * 20 19 18 35 35 H 1.08004 * 119.72785 * 180.23476 * 21 20 19 36 36 H 1.07999 * 119.98927 * 179.76461 * 22 21 20 37 37 H 1.08003 * 124.87533 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0087 -1.2012 0.0005 8 1 3.0888 -1.2011 0.0010 9 8 1.3347 -2.3687 0.0005 10 6 2.0688 -3.5029 0.1067 11 6 3.4556 -3.4392 0.1014 12 6 4.2015 -4.5957 0.2091 13 6 3.5748 -5.8258 0.3290 14 6 2.1991 -5.9087 0.3302 15 6 1.4310 -4.7471 0.2220 16 6 -0.0417 -4.8281 0.2283 17 8 -0.7069 -3.8144 0.1343 18 7 -0.6503 -6.0256 0.3393 19 6 -2.0405 -6.1158 0.2288 20 6 -2.7469 -5.1555 -0.4747 21 6 -4.1248 -5.2447 -0.5898 22 6 -4.8122 -6.2845 0.0022 23 6 -4.1234 -7.2543 0.7162 24 8 -4.4977 -8.3631 1.3917 25 6 -3.3944 -8.9363 1.8988 26 7 -2.3414 -8.2468 1.5779 27 6 -2.7286 -7.1757 0.8344 28 1 -0.4850 0.8400 -0.0004 29 1 3.9514 -2.4840 0.0122 30 1 5.2801 -4.5409 0.2050 31 1 4.1674 -6.7244 0.4176 32 1 1.7155 -6.8703 0.4192 33 1 -0.1233 -6.8247 0.4959 34 1 -2.2209 -4.3347 -0.9397 35 1 -4.6658 -4.4921 -1.1442 36 1 -5.8866 -6.3431 -0.0900 37 1 -3.3840 -9.8409 2.4888 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791001353.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:09 Heat of formation + Delta-G solvation = -3.935060 kcal Electronic energy + Delta-G solvation = -26059.079433 eV Core-core repulsion = 22154.438366 eV Total energy + Delta-G solvation = -3904.641068 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.23841 -41.69082 -40.39895 -38.62429 -38.06552 -36.08896 -35.33497 -34.34253 -32.47265 -30.92997 -30.62929 -30.02236 -27.40237 -25.47834 -24.55265 -24.23815 -23.38289 -22.49753 -21.47193 -19.96316 -19.75007 -19.19341 -18.56992 -17.80749 -17.61872 -17.27553 -16.72943 -16.37117 -16.22846 -16.01921 -15.92040 -15.43060 -15.34402 -14.99524 -14.55177 -14.50052 -14.30970 -13.80886 -13.56606 -13.27422 -13.12330 -12.99900 -12.68841 -12.53812 -12.52954 -12.39545 -12.16118 -11.69010 -11.50709 -11.41088 -10.83424 -10.66276 -9.93151 -9.79953 -9.13028 -8.89906 -8.46020 -6.16945 -0.38961 0.02194 0.21299 0.68289 1.33093 1.45572 1.47263 1.50516 1.62482 1.89230 1.91704 2.15205 2.60404 2.85118 2.99218 3.17495 3.39156 3.60708 3.69480 3.96659 4.00985 4.11137 4.21210 4.26867 4.33024 4.47252 4.56087 4.64593 4.87884 4.91379 5.03286 5.08346 5.11681 5.22532 5.32177 5.38351 5.43898 5.55736 5.65065 5.70510 5.93566 6.10996 6.38694 6.54854 6.92886 7.17601 7.75239 8.73654 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.014393 B = 0.003707 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.897013 B = 7551.335340 C = 9259.958377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C -0.018 4.018 3 Si 1.021 2.979 4 H -0.253 1.253 5 H -0.273 1.273 6 H -0.255 1.255 7 C -0.430 4.430 8 H 0.108 0.892 9 O -0.184 6.184 10 C 0.156 3.844 11 C -0.255 4.255 12 C -0.034 4.034 13 C -0.199 4.199 14 C -0.031 4.031 15 C -0.249 4.249 16 C 0.549 3.451 17 O -0.531 6.531 18 N -0.655 5.655 19 C 0.197 3.803 20 C -0.165 4.165 21 C -0.063 4.063 22 C -0.112 4.112 23 C 0.021 3.979 24 O -0.215 6.215 25 C 0.246 3.754 26 N -0.514 5.514 27 C -0.033 4.033 28 H 0.272 0.728 29 H 0.128 0.872 30 H 0.158 0.842 31 H 0.165 0.835 32 H 0.152 0.848 33 H 0.421 0.579 34 H 0.127 0.873 35 H 0.168 0.832 36 H 0.171 0.829 37 H 0.312 0.688 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.710 -18.279 1.585 18.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.218 4.218 3 Si 0.839 3.161 4 H -0.177 1.177 5 H -0.198 1.198 6 H -0.179 1.179 7 C -0.506 4.506 8 H 0.126 0.874 9 O -0.086 6.086 10 C 0.100 3.900 11 C -0.274 4.274 12 C -0.052 4.052 13 C -0.217 4.217 14 C -0.050 4.050 15 C -0.253 4.253 16 C 0.341 3.659 17 O -0.408 6.408 18 N -0.300 5.300 19 C 0.099 3.901 20 C -0.187 4.187 21 C -0.081 4.081 22 C -0.132 4.132 23 C -0.030 4.030 24 O -0.107 6.107 25 C 0.015 3.985 26 N -0.242 5.242 27 C -0.145 4.145 28 H 0.081 0.919 29 H 0.146 0.854 30 H 0.176 0.824 31 H 0.182 0.818 32 H 0.169 0.831 33 H 0.260 0.740 34 H 0.144 0.856 35 H 0.185 0.815 36 H 0.188 0.812 37 H 0.327 0.673 Dipole moment (debyes) X Y Z Total from point charges -2.897 -17.449 1.641 17.763 hybrid contribution -0.107 0.894 -0.068 0.903 sum -3.004 -16.554 1.573 16.898 Atomic orbital electron populations 1.70295 1.08279 1.28759 1.46263 1.26728 0.96738 1.03003 0.95348 0.84637 0.77396 0.73928 0.80129 1.17730 1.19796 1.17941 1.22019 0.92796 0.81656 1.54089 0.87432 1.84157 1.35209 1.12156 1.77116 1.19971 0.91700 0.87237 0.91079 1.21328 0.92132 1.01110 1.12827 1.21481 1.00912 0.91091 0.91725 1.21164 0.93606 0.98703 1.08259 1.21265 0.94798 0.95369 0.93536 1.19057 0.91159 0.93239 1.21883 1.18702 0.88793 0.82458 0.75938 1.90903 1.66359 1.35671 1.47863 1.43262 1.05012 1.10416 1.71320 1.17107 0.83232 0.94023 0.95734 1.21404 0.96113 0.99995 1.01185 1.21212 0.92214 0.97258 0.97449 1.20151 1.01712 0.92081 0.99242 1.20290 0.93071 0.90287 0.99312 1.84559 1.37458 1.32735 1.55927 1.29457 0.75970 0.98681 0.94351 1.70453 1.32212 1.05549 1.15998 1.19445 0.92501 0.98196 1.04334 0.91926 0.85416 0.82448 0.81776 0.83100 0.73961 0.85575 0.81476 0.81162 0.67334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -57.77 13.67 21.62 0.30 -57.47 16 2 C -0.02 -1.06 5.49 84.85 0.47 -0.60 16 3 Si 1.02 43.46 29.55 68.60 2.03 45.48 16 4 H -0.25 -9.98 7.11 99.48 0.71 -9.28 16 5 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 6 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 7 C -0.43 -25.57 9.49 67.93 0.64 -24.93 16 8 H 0.11 5.71 5.20 -2.91 -0.02 5.69 16 9 O -0.18 -11.54 7.84 0.84 0.01 -11.53 16 10 C 0.16 7.97 6.66 22.91 0.15 8.13 16 11 C -0.25 -10.72 9.16 22.36 0.20 -10.51 16 12 C -0.03 -1.05 10.03 22.30 0.22 -0.82 16 13 C -0.20 -5.43 10.02 22.25 0.22 -5.21 16 14 C -0.03 -1.00 9.53 22.52 0.21 -0.78 16 15 C -0.25 -11.02 5.89 -19.99 -0.12 -11.14 16 16 C 0.55 25.81 7.57 86.68 0.66 26.47 16 17 O -0.53 -30.73 12.34 16.83 0.21 -30.52 16 18 N -0.66 -24.54 5.31 -305.85 -1.62 -26.17 16 19 C 0.20 7.27 6.46 38.38 0.25 7.52 16 20 C -0.16 -6.24 8.71 22.39 0.19 -6.04 16 21 C -0.06 -1.78 10.02 22.29 0.22 -1.55 16 22 C -0.11 -2.71 10.06 22.33 0.22 -2.49 16 23 C 0.02 0.58 7.43 22.87 0.17 0.75 16 24 O -0.22 -4.54 10.77 -10.38 -0.11 -4.65 16 25 C 0.25 4.08 13.13 130.53 1.71 5.79 16 26 N -0.51 -13.45 11.33 -308.07 -3.49 -16.94 16 27 C -0.03 -1.03 7.14 39.43 0.28 -0.75 16 28 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 29 H 0.13 5.39 5.63 -2.91 -0.02 5.37 16 30 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 31 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 32 H 0.15 3.59 6.42 -2.91 -0.02 3.58 16 33 H 0.42 12.91 6.84 -92.71 -0.63 12.27 16 34 H 0.13 5.78 5.77 -2.91 -0.02 5.77 16 35 H 0.17 3.74 8.06 -2.91 -0.02 3.72 16 36 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 37 H 0.31 0.69 8.06 -2.91 -0.02 0.66 16 Total: -1.00 -89.39 327.37 3.56 -85.83 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: 0.53 Total: 32.14 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: 5.72 Total: -16.17 kcal Atomic # 7 Polarization: -95.76 SS G_CDS: -4.82 Total: -100.58 kcal Atomic # 8 Polarization: -46.81 SS G_CDS: 0.10 Total: -46.70 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -89.39 3.56 -85.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791001353.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.892 kcal (2) G-P(sol) polarization free energy of solvation -89.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds