Wall clock time and date at job start Tue Mar 31 2020 13:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47129 * 2 1 4 4 C 1.50704 * 109.47132 * 119.99398 * 2 1 3 5 5 H 1.08000 * 119.99973 * 119.99606 * 4 2 1 6 6 C 1.37879 * 119.99984 * 300.00581 * 4 2 1 7 7 N 1.31514 * 120.00045 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99907 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47411 * 89.99366 * 8 6 4 10 10 H 1.48502 * 109.46990 * 209.99404 * 8 6 4 11 11 H 1.48508 * 109.47176 * 329.99240 * 8 6 4 12 12 O 1.45194 * 109.47373 * 239.99459 * 2 1 3 13 13 C 1.34227 * 117.00010 * 89.99827 * 12 2 1 14 14 O 1.20825 * 119.99766 * 0.02562 * 13 12 2 15 15 C 1.50706 * 120.00271 * 180.02562 * 13 12 2 16 16 H 1.09002 * 108.43297 * 356.67323 * 15 13 12 17 17 C 1.51833 * 108.60805 * 238.83208 * 15 13 12 18 18 C 1.53607 * 109.08860 * 177.42065 * 17 15 13 19 19 S 1.81775 * 107.09784 * 71.36003 * 18 17 15 20 20 O 1.42098 * 110.63700 * 66.49739 * 19 18 17 21 21 O 1.42106 * 110.64086 * 203.69788 * 19 18 17 22 22 C 1.76650 * 103.62955 * 315.17344 * 19 18 17 23 23 C 1.38795 * 117.84585 * 191.62236 * 22 19 18 24 24 C 1.37926 * 120.65592 * 181.50570 * 23 22 19 25 25 C 1.38267 * 119.40906 * 359.96195 * 24 23 22 26 26 C 1.37696 * 119.90542 * 359.57687 * 25 24 23 27 27 C 1.37533 * 121.89538 * 12.31155 * 22 19 18 28 28 H 1.09001 * 109.47268 * 60.00422 * 1 2 3 29 29 H 1.09000 * 109.47070 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47323 * 300.00259 * 1 2 3 31 31 H 0.96999 * 119.99635 * 180.02562 * 7 6 4 32 32 H 1.09005 * 109.53361 * 57.53453 * 17 15 13 33 33 H 1.09000 * 109.53199 * 297.30568 * 17 15 13 34 34 H 1.08994 * 109.94385 * 190.78306 * 18 17 15 35 35 H 1.09004 * 109.94426 * 311.94083 * 18 17 15 36 36 H 1.08007 * 119.66801 * 1.48617 * 23 22 19 37 37 H 1.08000 * 120.29074 * 179.97438 * 24 23 22 38 38 H 1.08000 * 120.05105 * 179.55968 * 25 24 23 39 39 H 1.08000 * 119.51307 * 180.12749 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 0.9433 0.8303 2.6034 8 14 2.3224 -1.1192 4.0081 9 1 3.6304 -0.5436 4.4120 10 1 1.3443 -0.9485 5.1124 11 1 2.4879 -2.5651 3.7125 12 8 2.0140 -0.6846 -1.1854 13 6 2.2171 0.0638 -2.2810 14 8 1.9981 1.2517 -2.2503 15 6 2.7183 -0.5775 -3.5494 16 1 2.9073 -1.6325 -3.3508 17 6 4.0275 0.0837 -3.9420 18 6 4.5813 -0.6054 -5.1982 19 16 3.5142 -0.1212 -6.5878 20 8 3.6398 1.2687 -6.8551 21 8 3.5858 -1.0817 -7.6327 22 6 1.8806 -0.2960 -5.9387 23 6 0.8188 -0.2366 -6.8306 24 6 -0.4820 -0.3352 -6.3829 25 6 -0.7246 -0.4955 -5.0312 26 6 0.3296 -0.5639 -4.1480 27 6 1.6476 -0.4716 -4.5947 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.7093 1.1619 3.4844 32 1 4.7442 -0.0143 -3.1266 33 1 3.8542 1.1392 -4.1517 34 1 5.6039 -0.2763 -5.3825 35 1 4.5567 -1.6876 -5.0701 36 1 1.0132 -0.1116 -7.8857 37 1 -1.3038 -0.2878 -7.0821 38 1 -1.7393 -0.5667 -4.6685 39 1 0.1329 -0.6913 -3.0937 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793145377.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:29 Heat of formation + Delta-G solvation = -131.147423 kcal Electronic energy + Delta-G solvation = -25721.260870 eV Core-core repulsion = 21914.254661 eV Total energy + Delta-G solvation = -3807.006209 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.65372 -39.03427 -37.25652 -36.44899 -36.09021 -35.34523 -33.37506 -31.54920 -31.29433 -29.83461 -28.09306 -25.44170 -23.92457 -23.24694 -22.79794 -20.99014 -19.73906 -19.03969 -17.90976 -17.35699 -16.95525 -16.71390 -16.33176 -15.83485 -15.57553 -15.24171 -14.84579 -14.80275 -14.44150 -14.00035 -13.81909 -13.41690 -13.01647 -12.84073 -12.70878 -12.41704 -12.29145 -12.16755 -12.12798 -11.96860 -11.72570 -11.54288 -11.31294 -11.15852 -10.98929 -10.91886 -10.49246 -10.46815 -10.38025 -9.88899 -9.70717 -9.49420 -9.04394 -8.97636 -8.59428 -6.28117 -4.35881 -0.12110 0.66567 1.06941 2.56429 2.64371 3.12106 3.18480 3.24913 3.28736 3.39313 3.41679 4.01661 4.03161 4.24773 4.33701 4.45993 4.66161 4.73990 4.82425 4.97484 5.05208 5.05649 5.13443 5.22631 5.41893 5.48301 5.59130 5.65961 5.73378 5.86636 6.07041 6.22800 6.48468 6.64256 6.73830 6.76008 6.98297 7.47081 7.58839 7.79180 8.00848 8.43386 8.74162 9.30132 10.79210 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.021660 B = 0.003551 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.379396 B = 7883.964581 C = 8667.938599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.214 3.786 3 H 0.049 0.951 4 C -0.524 4.524 5 H 0.070 0.930 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.912 3.088 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.271 1.271 12 O -0.352 6.352 13 C 0.461 3.539 14 O -0.504 6.504 15 C -0.069 4.069 16 H 0.129 0.871 17 C -0.102 4.102 18 C -0.596 4.596 19 S 2.492 3.508 20 O -0.929 6.929 21 O -0.938 6.938 22 C -0.628 4.628 23 C -0.029 4.029 24 C -0.133 4.133 25 C -0.063 4.063 26 C -0.129 4.129 27 C 0.020 3.980 28 H 0.016 0.984 29 H 0.038 0.962 30 H 0.101 0.899 31 H 0.267 0.733 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.241 -4.542 -16.361 17.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.562 4.562 5 H 0.088 0.912 6 C -0.139 4.139 7 N -0.525 5.525 8 Si 0.739 3.261 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.196 1.196 12 O -0.268 6.268 13 C 0.302 3.698 14 O -0.392 6.392 15 C -0.088 4.088 16 H 0.147 0.853 17 C -0.141 4.141 18 C -0.726 4.726 19 S 2.672 3.328 20 O -0.927 6.927 21 O -0.936 6.936 22 C -0.715 4.715 23 C -0.048 4.048 24 C -0.151 4.151 25 C -0.081 4.081 26 C -0.148 4.148 27 C 0.019 3.981 28 H 0.035 0.965 29 H 0.057 0.943 30 H 0.119 0.881 31 H 0.077 0.923 32 H 0.128 0.872 33 H 0.119 0.881 34 H 0.166 0.834 35 H 0.164 0.836 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.151 0.849 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.277 -3.801 -16.968 17.537 hybrid contribution -0.292 -0.562 1.777 1.887 sum 1.985 -4.363 -15.191 15.929 Atomic orbital electron populations 1.22186 0.97459 1.00180 1.01563 1.20721 0.91461 0.94033 0.77548 0.93359 1.21000 1.32790 1.13632 0.88768 0.91229 1.24888 0.94822 0.95070 0.99108 1.69889 1.35835 1.22463 1.24345 0.86263 0.78606 0.79878 0.81334 1.20339 1.20896 1.19561 1.86522 1.75519 1.43557 1.21230 1.22639 0.75505 0.86038 0.85645 1.90655 1.47621 1.16541 1.84399 1.19898 0.94029 1.04179 0.90715 0.85293 1.21218 0.94877 1.00688 0.97279 1.30273 1.15082 1.12081 1.15201 1.05662 0.75627 0.75331 0.76163 1.93626 1.85460 1.30540 1.83035 1.93593 1.85915 1.62857 1.51202 1.29850 1.22796 1.17722 1.01122 1.20729 0.92042 0.93462 0.98535 1.21221 0.96676 1.01193 0.96052 1.21323 0.99481 0.93984 0.93296 1.21614 0.92116 1.00066 1.00970 1.18850 0.94559 0.93708 0.90950 0.96526 0.94314 0.88056 0.92280 0.87203 0.88088 0.83410 0.83604 0.84847 0.84725 0.84850 0.84858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.73 9.33 37.15 0.35 -3.39 16 2 C 0.21 5.44 2.56 -27.88 -0.07 5.37 16 3 H 0.05 1.36 7.16 -51.93 -0.37 0.99 16 4 C -0.52 -14.03 8.90 -34.44 -0.31 -14.33 16 5 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.38 11.32 55.43 0.63 -23.75 16 8 Si 0.91 20.32 29.54 -169.99 -5.02 15.30 16 9 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 12 O -0.35 -7.67 9.85 -39.25 -0.39 -8.05 16 13 C 0.46 8.74 4.68 36.01 0.17 8.91 16 14 O -0.50 -11.11 16.02 -18.75 -0.30 -11.41 16 15 C -0.07 -0.94 2.38 -93.85 -0.22 -1.16 16 16 H 0.13 1.41 8.11 -51.93 -0.42 0.99 16 17 C -0.10 -1.13 4.92 -27.01 -0.13 -1.27 16 18 C -0.60 -4.64 6.58 37.47 0.25 -4.40 16 19 S 2.49 27.64 5.23 -107.50 -0.56 27.07 16 20 O -0.93 -13.22 17.94 -57.51 -1.03 -14.25 16 21 O -0.94 -12.11 17.82 -57.51 -1.02 -13.13 16 22 C -0.63 -7.98 5.68 -39.63 -0.23 -8.21 16 23 C -0.03 -0.34 9.49 -39.49 -0.37 -0.71 16 24 C -0.13 -1.43 10.07 -39.68 -0.40 -1.83 16 25 C -0.06 -0.75 10.03 -39.77 -0.40 -1.15 16 26 C -0.13 -1.85 8.96 -39.32 -0.35 -2.20 16 27 C 0.02 0.28 5.48 -104.76 -0.57 -0.29 16 28 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.10 2.62 6.07 -51.93 -0.32 2.31 16 31 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.10 1.22 7.96 -51.93 -0.41 0.80 16 34 H 0.15 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.15 0.79 8.10 -51.93 -0.42 0.37 16 36 H 0.13 1.29 8.05 -52.48 -0.42 0.87 16 37 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 38 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 39 H 0.13 2.08 6.79 -52.49 -0.36 1.73 16 LS Contribution 340.42 15.07 5.13 5.13 Total: -1.00 -34.62 340.42 -9.76 -44.39 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -4.80 Total: 1.77 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: -2.39 Total: -23.06 kcal Atomic # 7 Polarization: -24.38 SS G_CDS: 0.63 Total: -23.75 kcal Atomic # 8 Polarization: -44.10 SS G_CDS: -2.74 Total: -46.85 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 27.64 SS G_CDS: -0.56 Total: 27.07 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.62 -9.76 -44.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793145377.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.761 kcal (2) G-P(sol) polarization free energy of solvation -34.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds