Wall clock time and date at job start Tue Mar 31 2020 13:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47129 * 2 1 4 4 C 1.50704 * 109.47132 * 119.99398 * 2 1 3 5 5 H 1.08000 * 119.99973 * 119.99606 * 4 2 1 6 6 C 1.37879 * 119.99984 * 300.00581 * 4 2 1 7 7 N 1.31514 * 120.00045 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99907 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47411 * 89.99366 * 8 6 4 10 10 H 1.48502 * 109.46990 * 209.99404 * 8 6 4 11 11 H 1.48508 * 109.47176 * 329.99240 * 8 6 4 12 12 O 1.45194 * 109.47373 * 239.99459 * 2 1 3 13 13 C 1.34227 * 117.00010 * 89.99827 * 12 2 1 14 14 O 1.20825 * 119.99766 * 0.02562 * 13 12 2 15 15 C 1.50706 * 120.00271 * 180.02562 * 13 12 2 16 16 H 1.09002 * 108.43297 * 356.67323 * 15 13 12 17 17 C 1.51833 * 108.60805 * 238.83208 * 15 13 12 18 18 C 1.53607 * 109.08860 * 177.42065 * 17 15 13 19 19 S 1.81775 * 107.09784 * 71.36003 * 18 17 15 20 20 O 1.42098 * 110.63700 * 66.49739 * 19 18 17 21 21 O 1.42106 * 110.64086 * 203.69788 * 19 18 17 22 22 C 1.76650 * 103.62955 * 315.17344 * 19 18 17 23 23 C 1.38795 * 117.84585 * 191.62236 * 22 19 18 24 24 C 1.37926 * 120.65592 * 181.50570 * 23 22 19 25 25 C 1.38267 * 119.40906 * 359.96195 * 24 23 22 26 26 C 1.37696 * 119.90542 * 359.57687 * 25 24 23 27 27 C 1.37533 * 121.89538 * 12.31155 * 22 19 18 28 28 H 1.09001 * 109.47268 * 60.00422 * 1 2 3 29 29 H 1.09000 * 109.47070 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47323 * 300.00259 * 1 2 3 31 31 H 0.96999 * 119.99635 * 180.02562 * 7 6 4 32 32 H 1.09005 * 109.53361 * 57.53453 * 17 15 13 33 33 H 1.09000 * 109.53199 * 297.30568 * 17 15 13 34 34 H 1.08994 * 109.94385 * 190.78306 * 18 17 15 35 35 H 1.09004 * 109.94426 * 311.94083 * 18 17 15 36 36 H 1.08007 * 119.66801 * 1.48617 * 23 22 19 37 37 H 1.08000 * 120.29074 * 179.97438 * 24 23 22 38 38 H 1.08000 * 120.05105 * 179.55968 * 25 24 23 39 39 H 1.08000 * 119.51307 * 180.12749 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 0.9433 0.8303 2.6034 8 14 2.3224 -1.1192 4.0081 9 1 3.6304 -0.5436 4.4120 10 1 1.3443 -0.9485 5.1124 11 1 2.4879 -2.5651 3.7125 12 8 2.0140 -0.6846 -1.1854 13 6 2.2171 0.0638 -2.2810 14 8 1.9981 1.2517 -2.2503 15 6 2.7183 -0.5775 -3.5494 16 1 2.9073 -1.6325 -3.3508 17 6 4.0275 0.0837 -3.9420 18 6 4.5813 -0.6054 -5.1982 19 16 3.5142 -0.1212 -6.5878 20 8 3.6398 1.2687 -6.8551 21 8 3.5858 -1.0817 -7.6327 22 6 1.8806 -0.2960 -5.9387 23 6 0.8188 -0.2366 -6.8306 24 6 -0.4820 -0.3352 -6.3829 25 6 -0.7246 -0.4955 -5.0312 26 6 0.3296 -0.5639 -4.1480 27 6 1.6476 -0.4716 -4.5947 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.7093 1.1619 3.4844 32 1 4.7442 -0.0143 -3.1266 33 1 3.8542 1.1392 -4.1517 34 1 5.6039 -0.2763 -5.3825 35 1 4.5567 -1.6876 -5.0701 36 1 1.0132 -0.1116 -7.8857 37 1 -1.3038 -0.2878 -7.0821 38 1 -1.7393 -0.5667 -4.6685 39 1 0.1329 -0.6913 -3.0937 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793145377.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:28 Heat of formation + Delta-G solvation = -154.114201 kcal Electronic energy + Delta-G solvation = -25722.256785 eV Core-core repulsion = 21914.254661 eV Total energy + Delta-G solvation = -3808.002124 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.00540 -40.26282 -38.22025 -37.87055 -37.12012 -36.56710 -35.34734 -32.51329 -32.18521 -31.73783 -29.17038 -27.47923 -24.87499 -24.40501 -24.00430 -22.46672 -21.21308 -19.93168 -19.13668 -18.73605 -18.58242 -17.74617 -17.39275 -17.34231 -16.67277 -16.60290 -16.37523 -15.90591 -15.65256 -15.02794 -14.92032 -14.76021 -14.24623 -14.09515 -13.78264 -13.74676 -13.62260 -13.27268 -13.25573 -13.12667 -13.09334 -12.99270 -12.85491 -12.61415 -12.44297 -12.39753 -12.16951 -11.89893 -11.64295 -11.42693 -11.33107 -11.01678 -10.61602 -10.45297 -9.96491 -8.29948 -6.46923 -0.94626 -0.28078 0.09096 1.14228 1.42429 1.44071 1.55240 1.69536 1.80128 2.35910 2.42097 2.57497 3.01443 3.04040 3.17771 3.37382 3.60857 3.75794 3.82748 3.95348 3.96743 4.17665 4.20252 4.27739 4.45336 4.49782 4.58917 4.67306 4.72436 4.74468 4.79745 4.87919 4.94079 5.10540 5.15136 5.28142 5.46986 5.59206 5.72688 5.88168 6.03204 6.57272 6.86024 7.24855 8.77572 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.021660 B = 0.003551 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.379396 B = 7883.964581 C = 8667.938599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.217 3.783 3 H 0.009 0.991 4 C -0.547 4.547 5 H 0.071 0.929 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.981 3.019 9 H -0.272 1.272 10 H -0.278 1.278 11 H -0.261 1.261 12 O -0.355 6.355 13 C 0.460 3.540 14 O -0.541 6.541 15 C -0.061 4.061 16 H 0.159 0.841 17 C -0.109 4.109 18 C -0.566 4.566 19 S 2.500 3.500 20 O -0.967 6.967 21 O -0.958 6.958 22 C -0.638 4.638 23 C -0.044 4.044 24 C -0.127 4.127 25 C -0.068 4.068 26 C -0.159 4.159 27 C 0.006 3.994 28 H 0.023 0.977 29 H 0.047 0.953 30 H 0.080 0.920 31 H 0.270 0.730 32 H 0.127 0.873 33 H 0.085 0.915 34 H 0.188 0.812 35 H 0.182 0.818 36 H 0.153 0.847 37 H 0.170 0.830 38 H 0.154 0.846 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.355 -6.347 -17.106 18.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.164 3.836 3 H 0.027 0.973 4 C -0.585 4.585 5 H 0.089 0.911 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.805 3.195 9 H -0.197 1.197 10 H -0.203 1.203 11 H -0.185 1.185 12 O -0.272 6.272 13 C 0.303 3.697 14 O -0.431 6.431 15 C -0.080 4.080 16 H 0.177 0.823 17 C -0.148 4.148 18 C -0.699 4.699 19 S 2.682 3.318 20 O -0.965 6.965 21 O -0.955 6.955 22 C -0.723 4.723 23 C -0.063 4.063 24 C -0.145 4.145 25 C -0.085 4.085 26 C -0.177 4.177 27 C 0.005 3.995 28 H 0.042 0.958 29 H 0.066 0.934 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.145 0.855 33 H 0.104 0.896 34 H 0.205 0.795 35 H 0.199 0.801 36 H 0.170 0.830 37 H 0.188 0.812 38 H 0.172 0.828 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.362 -5.605 -17.763 18.927 hybrid contribution -0.666 0.042 1.949 2.060 sum 2.696 -5.563 -15.814 16.979 Atomic orbital electron populations 1.21993 0.96793 1.00467 1.00815 1.20381 0.91993 0.92175 0.79037 0.97288 1.21298 1.33444 1.13989 0.89745 0.91068 1.25810 0.94671 0.95621 1.02149 1.70016 1.36571 1.23686 1.25230 0.85200 0.78099 0.79036 0.77206 1.19742 1.20332 1.18512 1.86505 1.75850 1.43504 1.21309 1.23726 0.74064 0.85704 0.86166 1.90633 1.49157 1.18368 1.84924 1.20078 0.94911 1.05607 0.87371 0.82318 1.21316 0.93961 1.00094 0.99399 1.30155 1.15375 1.14034 1.10346 1.05416 0.75302 0.74175 0.76861 1.93580 1.85805 1.32745 1.84337 1.93565 1.86029 1.62821 1.53066 1.30105 1.24245 1.17292 1.00658 1.21200 0.92499 0.93036 0.99591 1.21641 0.97459 0.99365 0.96049 1.21626 0.99919 0.93276 0.93712 1.21658 0.93494 1.02206 1.00379 1.18871 0.94293 0.94827 0.91495 0.95820 0.93356 0.90157 0.92029 0.85513 0.89603 0.79493 0.80059 0.82980 0.81213 0.82808 0.87130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.07 9.33 71.98 0.67 -6.40 16 2 C 0.22 11.40 2.56 29.85 0.08 11.48 16 3 H 0.01 0.55 7.16 -2.38 -0.02 0.53 16 4 C -0.55 -29.71 8.90 25.60 0.23 -29.48 16 5 H 0.07 3.74 7.81 -2.91 -0.02 3.72 16 6 C 0.02 0.92 5.30 84.66 0.45 1.37 16 7 N -0.92 -51.36 11.32 21.45 0.24 -51.11 16 8 Si 0.98 41.34 29.54 68.60 2.03 43.36 16 9 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 10 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 11 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 12 O -0.36 -15.80 9.85 -51.39 -0.51 -16.31 16 13 C 0.46 17.81 4.68 71.24 0.33 18.15 16 14 O -0.54 -24.92 16.02 21.97 0.35 -24.57 16 15 C -0.06 -1.59 2.38 -12.89 -0.03 -1.62 16 16 H 0.16 3.09 8.11 -2.39 -0.02 3.07 16 17 C -0.11 -2.20 4.92 30.41 0.15 -2.05 16 18 C -0.57 -6.67 6.58 72.19 0.47 -6.20 16 19 S 2.50 51.09 5.23 -56.49 -0.30 50.80 16 20 O -0.97 -26.92 17.94 -127.68 -2.29 -29.21 16 21 O -0.96 -22.87 17.82 -127.68 -2.27 -25.14 16 22 C -0.64 -15.54 5.68 22.24 0.13 -15.42 16 23 C -0.04 -0.99 9.49 22.33 0.21 -0.78 16 24 C -0.13 -2.51 10.07 22.20 0.22 -2.28 16 25 C -0.07 -1.56 10.03 22.15 0.22 -1.34 16 26 C -0.16 -4.61 8.96 22.44 0.20 -4.41 16 27 C 0.01 0.17 5.48 -19.95 -0.11 0.06 16 28 H 0.02 1.07 8.14 -2.39 -0.02 1.06 16 29 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.08 4.32 6.07 -2.39 -0.01 4.30 16 31 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 32 H 0.13 2.17 8.14 -2.38 -0.02 2.15 16 33 H 0.09 2.02 7.96 -2.39 -0.02 2.00 16 34 H 0.19 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.18 1.00 8.10 -2.38 -0.02 0.98 16 36 H 0.15 2.71 8.05 -2.91 -0.02 2.69 16 37 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 38 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 39 H 0.11 3.64 6.79 -2.91 -0.02 3.62 16 Total: -1.00 -78.21 340.42 1.55 -76.66 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 1.07 Total: 14.44 kcal Atomic # 6 Polarization: -42.15 SS G_CDS: 3.23 Total: -38.92 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: 0.24 Total: -51.11 kcal Atomic # 8 Polarization: -90.51 SS G_CDS: -4.72 Total: -95.23 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.36 kcal Atomic # 16 Polarization: 51.09 SS G_CDS: -0.30 Total: 50.80 kcal Total: -78.21 1.55 -76.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793145377.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.453 kcal (2) G-P(sol) polarization free energy of solvation -78.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds