Wall clock time and date at job start Tue Mar 31 2020 13:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47200 * 2 1 4 4 C 1.50696 * 109.46911 * 119.99940 * 2 1 3 5 5 H 1.08004 * 120.00157 * 119.99687 * 4 2 1 6 6 C 1.37885 * 120.00235 * 299.99798 * 4 2 1 7 7 N 1.31517 * 119.99340 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00305 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46884 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46821 * 119.99583 * 8 6 4 11 11 H 1.48493 * 109.47316 * 240.00033 * 8 6 4 12 12 O 1.45204 * 109.47072 * 239.99314 * 2 1 3 13 13 C 1.34232 * 116.99419 * 90.00153 * 12 2 1 14 14 O 1.20829 * 120.00194 * 0.02562 * 13 12 2 15 15 C 1.50702 * 119.99517 * 179.97438 * 13 12 2 16 16 H 1.09000 * 108.55626 * 20.93722 * 15 13 12 17 17 C 1.51797 * 108.60560 * 138.63342 * 15 13 12 18 18 C 1.53609 * 109.10659 * 182.50945 * 17 15 13 19 19 S 1.81781 * 107.09488 * 288.71780 * 18 17 15 20 20 O 1.42095 * 110.63947 * 156.29508 * 19 18 17 21 21 O 1.42098 * 110.63764 * 293.50113 * 19 18 17 22 22 C 1.76573 * 103.65536 * 44.89912 * 19 18 17 23 23 C 1.38800 * 117.87324 * 167.58911 * 22 19 18 24 24 C 1.37925 * 120.65916 * 179.49375 * 23 22 19 25 25 C 1.38277 * 119.41511 * 359.81217 * 24 23 22 26 26 C 1.37703 * 119.89680 * 0.34641 * 25 24 23 27 27 C 1.37539 * 121.87885 * 347.52201 * 22 19 18 28 28 H 1.08998 * 109.47597 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47039 * 300.00483 * 1 2 3 30 30 H 1.09006 * 109.46783 * 59.99884 * 1 2 3 31 31 H 0.96999 * 119.99569 * 180.02562 * 7 6 4 32 32 H 1.08998 * 109.45379 * 62.65859 * 17 15 13 33 33 H 1.09005 * 109.59169 * 302.43130 * 17 15 13 34 34 H 1.08993 * 109.94653 * 169.30197 * 18 17 15 35 35 H 1.08996 * 109.94861 * 48.13802 * 18 17 15 36 36 H 1.07997 * 119.67015 * 359.47365 * 23 22 19 37 37 H 1.08004 * 120.29571 * 179.83010 * 24 23 22 38 38 H 1.07995 * 120.05137 * 180.32538 * 25 24 23 39 39 H 1.08001 * 119.50748 * 180.08840 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9436 0.8303 2.6033 8 14 2.3212 -1.1203 4.0081 9 1 3.1463 -2.2870 3.6039 10 1 3.1466 -0.1873 4.8165 11 1 1.1660 -1.5865 4.8161 12 8 2.0140 -0.6846 -1.1855 13 6 2.2171 0.0639 -2.2811 14 8 1.9982 1.2517 -2.2504 15 6 2.7193 -0.5773 -3.5491 16 1 2.5039 -1.6450 -3.5068 17 6 1.9654 0.0181 -4.7244 18 6 2.4238 -0.6724 -6.0177 19 16 4.1153 -0.1003 -6.3583 20 8 4.8083 -1.0401 -7.1680 21 8 4.1220 1.2862 -6.6691 22 6 4.9140 -0.2017 -4.7868 23 6 6.2964 -0.0819 -4.7526 24 6 6.9782 -0.1421 -3.5552 25 6 6.2718 -0.3197 -2.3797 26 6 4.9007 -0.4418 -2.4147 27 6 4.2060 -0.3916 -3.6231 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 0.7095 1.1620 3.4843 32 1 2.1755 1.0858 -4.7870 33 1 0.8950 -0.1367 -4.5883 34 1 1.7650 -0.3955 -6.8406 35 1 2.4170 -1.7542 -5.8842 36 1 6.8437 0.0595 -5.6729 37 1 8.0542 -0.0509 -3.5356 38 1 6.7948 -0.3630 -1.4358 39 1 4.3552 -0.5790 -1.4927 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793145383.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:31 Heat of formation + Delta-G solvation = -131.498735 kcal Electronic energy + Delta-G solvation = -25771.790256 eV Core-core repulsion = 21964.768813 eV Total energy + Delta-G solvation = -3807.021443 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.62756 -39.01673 -37.24639 -36.47031 -36.08999 -35.30213 -33.39293 -31.53081 -31.25124 -29.77822 -28.09572 -25.43370 -23.90510 -23.17294 -22.77722 -21.00509 -19.68324 -19.01694 -17.94093 -17.28374 -16.95219 -16.65405 -16.42104 -15.82102 -15.62751 -15.19821 -14.91791 -14.68964 -14.43407 -13.96629 -13.69406 -13.39615 -12.95109 -12.82769 -12.72644 -12.35941 -12.26979 -12.21498 -12.14990 -11.93498 -11.67792 -11.51842 -11.28661 -11.17815 -10.96576 -10.90853 -10.48043 -10.45390 -10.38768 -9.91808 -9.70692 -9.44373 -9.03495 -8.92532 -8.60479 -6.29059 -4.36861 -0.10699 0.70736 1.12313 2.58242 2.65528 3.12702 3.16450 3.24637 3.29414 3.42031 3.43841 4.02182 4.06198 4.23623 4.34681 4.46778 4.70816 4.76539 4.85203 5.00951 5.04517 5.10224 5.15032 5.29107 5.44998 5.48405 5.62573 5.71677 5.76219 5.95215 6.13869 6.31687 6.49637 6.71252 6.75793 6.77192 6.98781 7.46596 7.59178 7.78557 8.00320 8.42292 8.73326 9.29257 10.78297 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.020400 B = 0.003782 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.242871 B = 7402.191790 C = 8319.653684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.214 3.786 3 H 0.048 0.952 4 C -0.524 4.524 5 H 0.070 0.930 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.911 3.089 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.281 1.281 12 O -0.353 6.353 13 C 0.462 3.538 14 O -0.504 6.504 15 C -0.068 4.068 16 H 0.129 0.871 17 C -0.101 4.101 18 C -0.597 4.597 19 S 2.493 3.507 20 O -0.939 6.939 21 O -0.930 6.930 22 C -0.630 4.630 23 C -0.030 4.030 24 C -0.132 4.132 25 C -0.062 4.062 26 C -0.131 4.131 27 C 0.015 3.985 28 H 0.038 0.962 29 H 0.100 0.900 30 H 0.016 0.984 31 H 0.267 0.733 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.855 -4.492 -14.854 16.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.561 4.561 5 H 0.088 0.912 6 C -0.139 4.139 7 N -0.524 5.524 8 Si 0.738 3.262 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.206 1.206 12 O -0.269 6.269 13 C 0.303 3.697 14 O -0.393 6.393 15 C -0.087 4.087 16 H 0.147 0.853 17 C -0.139 4.139 18 C -0.727 4.727 19 S 2.673 3.327 20 O -0.936 6.936 21 O -0.927 6.927 22 C -0.716 4.716 23 C -0.049 4.049 24 C -0.151 4.151 25 C -0.080 4.080 26 C -0.150 4.150 27 C 0.014 3.986 28 H 0.057 0.943 29 H 0.119 0.881 30 H 0.035 0.965 31 H 0.077 0.923 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.165 0.835 35 H 0.163 0.837 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.057 -3.746 -15.402 16.969 hybrid contribution -0.055 -0.569 1.860 1.946 sum 6.002 -4.314 -13.543 15.429 Atomic orbital electron populations 1.22175 0.97401 1.00230 1.01555 1.20732 0.91569 0.93991 0.77515 0.93383 1.21030 1.32799 1.13576 0.88744 0.91198 1.24889 0.94836 0.95044 0.99104 1.69902 1.35864 1.22432 1.24243 0.86225 0.78697 0.79488 0.81775 1.19454 1.20703 1.20642 1.86525 1.75512 1.43627 1.21230 1.22647 0.75274 0.86007 0.85775 1.90647 1.47796 1.16439 1.84371 1.19916 0.91475 1.04165 0.93169 0.85340 1.21203 1.02925 1.01345 0.88470 1.30276 1.22773 1.12327 1.07363 1.05618 0.77349 0.75416 0.74309 1.93590 1.70546 1.64062 1.65412 1.93624 1.86202 1.30601 1.82290 1.29829 1.05206 1.17787 1.18804 1.20715 0.91383 0.93654 0.99160 1.21244 1.00384 1.01123 0.92373 1.21375 0.94117 0.93684 0.98808 1.21833 0.95359 0.99428 0.98357 1.18841 0.92519 0.94242 0.92989 0.94306 0.88121 0.96460 0.92329 0.87945 0.87491 0.83484 0.83691 0.84903 0.84756 0.84706 0.83783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.74 9.33 37.16 0.35 -3.39 16 2 C 0.21 5.39 2.56 -27.88 -0.07 5.32 16 3 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 4 C -0.52 -13.87 8.90 -34.44 -0.31 -14.17 16 5 H 0.07 1.82 7.81 -52.48 -0.41 1.41 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.27 11.32 55.43 0.63 -23.64 16 8 Si 0.91 20.23 29.54 -169.99 -5.02 15.20 16 9 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 O -0.35 -7.60 9.07 -39.26 -0.36 -7.96 16 13 C 0.46 8.75 5.28 36.01 0.19 8.94 16 14 O -0.50 -11.07 15.61 -18.75 -0.29 -11.36 16 15 C -0.07 -0.93 2.39 -93.87 -0.22 -1.15 16 16 H 0.13 1.39 8.14 -51.93 -0.42 0.96 16 17 C -0.10 -1.11 4.74 -27.03 -0.13 -1.24 16 18 C -0.60 -4.63 6.58 37.47 0.25 -4.38 16 19 S 2.49 27.99 5.23 -107.50 -0.56 27.42 16 20 O -0.94 -12.26 17.80 -57.51 -1.02 -13.28 16 21 O -0.93 -13.35 17.94 -57.51 -1.03 -14.38 16 22 C -0.63 -8.18 5.68 -39.63 -0.23 -8.41 16 23 C -0.03 -0.37 9.47 -39.49 -0.37 -0.74 16 24 C -0.13 -1.50 10.07 -39.68 -0.40 -1.90 16 25 C -0.06 -0.78 10.03 -39.76 -0.40 -1.18 16 26 C -0.13 -1.98 8.97 -39.32 -0.35 -2.33 16 27 C 0.02 0.22 5.52 -104.75 -0.58 -0.36 16 28 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.10 2.61 6.07 -51.93 -0.32 2.29 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.10 1.25 7.79 -51.93 -0.40 0.84 16 33 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.15 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.14 0.78 8.09 -51.93 -0.42 0.36 16 36 H 0.13 1.34 8.05 -52.49 -0.42 0.91 16 37 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 38 H 0.14 1.42 8.06 -52.49 -0.42 0.99 16 39 H 0.14 2.44 6.21 -52.49 -0.33 2.11 16 LS Contribution 338.95 15.07 5.11 5.11 Total: -1.00 -34.30 338.95 -9.69 -43.98 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -4.76 Total: 2.32 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: -2.37 Total: -23.42 kcal Atomic # 7 Polarization: -24.27 SS G_CDS: 0.63 Total: -23.64 kcal Atomic # 8 Polarization: -44.28 SS G_CDS: -2.70 Total: -46.98 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 16 Polarization: 27.99 SS G_CDS: -0.56 Total: 27.42 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.30 -9.69 -43.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793145383.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.516 kcal (2) G-P(sol) polarization free energy of solvation -34.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds